ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet76e07 |
|---|---|
| Clone Library Name | barley_pub |
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 97.1 bits (240), Expect = 1e-20 Identities = 44/69 (63%), Positives = 60/69 (86%), Gaps = 1/69 (1%) Frame = +2 Query: 92 KVVTILSVDGGGVRGIIPAIVLAFLEKELQKLDG-PDARIADYFDVVAGTSTGGLLTVML 268 ++VT+LS+DGGG++GIIPAI+L FLE +LQ++D DAR+ADYFDV+ GTSTGGLLT M+ Sbjct: 18 EMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMI 77 Query: 269 TAPDKDGRP 295 T P+++ RP Sbjct: 78 TTPNENNRP 86
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 97.1 bits (240), Expect = 1e-20 Identities = 44/69 (63%), Positives = 60/69 (86%), Gaps = 1/69 (1%) Frame = +2 Query: 92 KVVTILSVDGGGVRGIIPAIVLAFLEKELQKLDG-PDARIADYFDVVAGTSTGGLLTVML 268 ++VT+LS+DGGG++GIIPAI+L FLE +LQ++D DAR+ADYFDV+ GTSTGGLLT M+ Sbjct: 27 EMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMI 86 Query: 269 TAPDKDGRP 295 T P+++ RP Sbjct: 87 TTPNENNRP 95
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 97.1 bits (240), Expect = 1e-20 Identities = 44/69 (63%), Positives = 60/69 (86%), Gaps = 1/69 (1%) Frame = +2 Query: 92 KVVTILSVDGGGVRGIIPAIVLAFLEKELQKLDG-PDARIADYFDVVAGTSTGGLLTVML 268 ++VT+LS+DGGG++GIIPAI+L FLE +LQ++D DAR+ADYFDV+ GTSTGGLLT M+ Sbjct: 27 EMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMI 86 Query: 269 TAPDKDGRP 295 T P+++ RP Sbjct: 87 TTPNENNRP 95
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 97.1 bits (240), Expect = 1e-20 Identities = 44/69 (63%), Positives = 60/69 (86%), Gaps = 1/69 (1%) Frame = +2 Query: 92 KVVTILSVDGGGVRGIIPAIVLAFLEKELQKLDG-PDARIADYFDVVAGTSTGGLLTVML 268 ++VT+LS+DGGG++GIIPAI+L FLE +LQ++D DAR+ADYFDV+ GTSTGGLLT M+ Sbjct: 27 EMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMI 86 Query: 269 TAPDKDGRP 295 T P+++ RP Sbjct: 87 TTPNENNRP 95
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 94.4 bits (233), Expect = 7e-20 Identities = 43/69 (62%), Positives = 58/69 (84%), Gaps = 1/69 (1%) Frame = +2 Query: 92 KVVTILSVDGGGVRGIIPAIVLAFLEKELQKLDG-PDARIADYFDVVAGTSTGGLLTVML 268 ++VT+LS+DGGG++GIIPA +L FLE +LQ++D DAR+ADYFDV+ GTSTGGLLT M+ Sbjct: 27 EMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTSTGGLLTAMI 86 Query: 269 TAPDKDGRP 295 T P++ RP Sbjct: 87 TTPNETNRP 95
>PA2G6_HUMAN (O60733) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 806 Score = 41.2 bits (95), Expect = 7e-04 Identities = 23/55 (41%), Positives = 32/55 (58%) Frame = +2 Query: 104 ILSVDGGGVRGIIPAIVLAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTVML 268 +L +DGGGV+G+I +L +EK D FD VAGTSTGG+L + + Sbjct: 480 LLCLDGGGVKGLIIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILALAI 528
>PA2G6_MOUSE (P97819) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 752 Score = 40.8 bits (94), Expect = 9e-04 Identities = 22/55 (40%), Positives = 32/55 (58%) Frame = +2 Query: 104 ILSVDGGGVRGIIPAIVLAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTVML 268 +L +DGGGV+G++ +L +EK D FD VAGTSTGG+L + + Sbjct: 426 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILALAI 474
>PA2G6_RAT (P97570) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 751 Score = 40.8 bits (94), Expect = 9e-04 Identities = 22/55 (40%), Positives = 32/55 (58%) Frame = +2 Query: 104 ILSVDGGGVRGIIPAIVLAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTVML 268 +L +DGGGV+G++ +L +EK D FD VAGTSTGG+L + + Sbjct: 425 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILALAI 473
>DMP1_BOVIN (Q95120) Dentin matrix acidic phosphoprotein 1 precursor (Dentin| matrix protein 1) (DMP-1) Length = 510 Score = 32.7 bits (73), Expect = 0.24 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%) Frame = -2 Query: 301 EQRPAILVRRREHH----RQEAPGARAGDDIEVVRDPSIRPVQFLELLFKESEDDGRDDS 134 + + A L + REH RQE+ R+ +D + V+DPS Q ++L +E+ + ++++ Sbjct: 300 DSKEAGLGQSREHSKSESRQESEENRSPEDSQDVQDPSSESSQEVDLPSQENSSESQEEA 359 Query: 133 SHAAAVDAQD 104 H + D D Sbjct: 360 LHESRGDNPD 369
>DUS18_PONPY (Q5R8X2) Dual specificity protein phosphatase 18 (EC 3.1.3.48) (EC| 3.1.3.16) Length = 188 Score = 31.2 bits (69), Expect = 0.69 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%) Frame = +2 Query: 56 ANSKVMAAGDQAKVVTILSVDGGGVRGIIPAIVLAFLEKELQKL-----DGPDARIADYF 220 AN+K+M + +Q +V +SV+ V+ L +++Q L D PD+R+ D+F Sbjct: 35 ANNKLMLSSNQITMVINVSVE-----------VVNTLYEDIQYLQVPVADAPDSRLCDFF 83 Query: 221 DVVA 232 D VA Sbjct: 84 DPVA 87
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.8 bits (68), Expect = 0.90 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Frame = -3 Query: 285 SLSGAVSITVKRPPVLVPA-TTSK*SAILASGPSNFWSSFSRKARTMAGMIPLTPPPSTL 109 +L A+ +T PP A TT+ L+ PS S R P PST+ Sbjct: 4240 TLPPAIEMTSTAPPSTPTAPTTTSGGHTLSPPPSTTTSPPGTPTRGTTTGSSSAPTPSTV 4299 Query: 108 RMVTTFAWSPAAITL 64 + TT AW+P L Sbjct: 4300 QTTTTSAWTPTPTPL 4314
>MURA_PELLD (Q3B5D7) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 424 Score = 29.3 bits (64), Expect = 2.6 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 5/69 (7%) Frame = +2 Query: 83 DQAKVVTILS---VDGGGV--RGIIPAIVLAFLEKELQKLDGPDARIADYFDVVAGTSTG 247 D+ + TIL+ + GG V RG+IP+ +E LQK RI D V STG Sbjct: 234 DRIEAGTILAAAAITGGSVTIRGVIPS----HMESVLQKFSDAGCRIETTDDTVILKSTG 289 Query: 248 GLLTVMLTA 274 L +TA Sbjct: 290 RLKATDITA 298
>DUS18_HUMAN (Q8NEJ0) Dual specificity protein phosphatase 18 (EC 3.1.3.48) (EC| 3.1.3.16) (Low molecular weight dual specificity phosphatase 20) Length = 188 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/59 (25%), Positives = 32/59 (54%) Frame = +2 Query: 56 ANSKVMAAGDQAKVVTILSVDGGGVRGIIPAIVLAFLEKELQKLDGPDARIADYFDVVA 232 AN+K+M + +Q +V +SV+ ++ + ++ D P++R+ D+FD +A Sbjct: 35 ANNKLMLSSNQITMVINVSVE------VVNTLYEDIQYMQVPVADSPNSRLCDFFDPIA 87
>MYST3_HUMAN (Q92794) Histone acetyltransferase MYST3 (EC 2.3.1.48) (EC 2.3.1.-)| (MYST protein 3) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein 3) (Runt-related transcription factor-binding protein 2) (Monocytic leukemia zinc finger protein) (Zinc finger protei Length = 2004 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Frame = -2 Query: 280 VRRREHHRQEAPGARAGDDIEVVRDP-----SIRPVQFLELLFKESEDDGRDDSS 131 VR+R+HH + EV+ +P S RP+ LE F+ E++ +D + Sbjct: 1023 VRKRKHHNSSVVTETISETTEVLDEPFEDSDSERPMPRLEPTFEIDEEEEEEDEN 1077
>HMSH_DROME (Q03372) Muscle segmentation homeobox (Protein drop) (Protein msh)| Length = 515 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/44 (34%), Positives = 19/44 (43%) Frame = -3 Query: 201 ASGPSNFWSSFSRKARTMAGMIPLTPPPSTLRMVTTFAWSPAAI 70 A GP N SS + + A P PP S V + PAA+ Sbjct: 153 ADGPQNLTSSAATSPISQASSTPPPPPASAAAQVPANTFHPAAV 196
>BGAL_KLULA (P00723) Beta-galactosidase (EC 3.2.1.23) (Lactase)| Length = 1025 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -2 Query: 169 FKESEDDGRDDSSHAAAVDAQDGHHLRLVTCCHHFG 62 FK S++ G D+++HA V H+LRL H G Sbjct: 962 FKISDEYGVDEAAHACDVKRYGRHYLRLDHAIHGVG 997
>TBX2_CANFA (Q863A2) T-box transcription factor TBX2 (T-box protein 2)| Length = 702 Score = 28.5 bits (62), Expect = 4.5 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Frame = -3 Query: 237 VPATTSK*SAILASGP---SNFWSSFSRKARTMAGMIPLTPPPSTLRMVTTFA 88 +PAT++ +A A+G S+F S + R IP+T PPST + T A Sbjct: 580 LPATSAAAAAAAAAGSLSRSHFLGSARPRLRFSPYQIPVTIPPSTSLLTTGLA 632
>MYST3_RAT (Q5TKR9) Histone acetyltransferase MYST3 (EC 2.3.1.48) (EC 2.3.1.-)| (MYST protein 3) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein 3) (Monocytic leukemia zinc finger protein) (Monocytic leukemia zinc finger homolog) Length = 1998 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Frame = -2 Query: 280 VRRREHHRQEAPGARAGDDIEVVRDP-----SIRPVQFLELLFKESEDDGRDDSS 131 VR+R+HH + EV+ +P S RP+ LE F+ E++ +D + Sbjct: 1022 VRKRKHHNSSVVTETISETTEVLDEPFEDSDSERPMPRLEPTFEIEEEEEEEDEN 1076
>APT_CLOPE (Q8XJ22) Adenine phosphoribosyltransferase (EC 2.4.2.7) (APRT)| Length = 172 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +2 Query: 80 GDQAKVVTILSVDGGGVRGIIPAIVLAFLEKELQKLDGPDAR 205 G K +T L DG G+R + + F +K + + GP+AR Sbjct: 17 GISFKDITTLIADGEGLRDSVDQMAEFFKDKNIDVVVGPEAR 58
>GP112_HUMAN (Q8IZF6) Probable G-protein coupled receptor 112| Length = 2799 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/46 (28%), Positives = 23/46 (50%) Frame = -3 Query: 177 SSFSRKARTMAGMIPLTPPPSTLRMVTTFAWSPAAITLEFANTSTS 40 ++++ T P TP +TL +T+F +SP + E + TS Sbjct: 1744 TNYATSLNTPVSYPPWTPSSATLPSLTSFVYSPHSTEAEISTPKTS 1789
>ERF1_LOXST (Q5CD84) Eukaryotic peptide chain release factor subunit 1 (eRF1)| (Eukaryotic release factor 1) Length = 436 Score = 28.1 bits (61), Expect = 5.9 Identities = 19/52 (36%), Positives = 27/52 (51%) Frame = +2 Query: 86 QAKVVTILSVDGGGVRGIIPAIVLAFLEKELQKLDGPDARIADYFDVVAGTS 241 +AKVVTI+ V+ GG G AI L+ ++ + K I F+ VA S Sbjct: 245 RAKVVTIIDVNYGGENGFNQAIELSQVQLQNVKFIKEKNLITKLFEEVAQNS 296
>EXO84_GIBZE (Q4HYZ2) Exocyst complex component EXO84| Length = 679 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/51 (25%), Positives = 26/51 (50%) Frame = -2 Query: 301 EQRPAILVRRREHHRQEAPGARAGDDIEVVRDPSIRPVQFLELLFKESEDD 149 E R + R+ R PG DI+ +RDP ++P ++++ ++ +D Sbjct: 100 EPRETVAAARKPPSRS-GPGVAPVIDIKGLRDPKLKPDRYVQAALSDATED 149
>DGKZ_HUMAN (Q13574) Diacylglycerol kinase zeta (EC 2.7.1.107) (Diglyceride| kinase zeta) (DGK-zeta) (DAG kinase zeta) Length = 1117 Score = 27.7 bits (60), Expect = 7.7 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 201 ASGPSNFWSSFSRKARTMAGMIPLTPPPST 112 A+GP WS+ KA T +G+ L PPP T Sbjct: 232 AAGPQA-WSALLAKAITKSGLQHLAPPPPT 260
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 27.3 bits (59), Expect = 10.0 Identities = 21/88 (23%), Positives = 45/88 (51%) Frame = -3 Query: 303 SNSGRPSLSGAVSITVKRPPVLVPATTSK*SAILASGPSNFWSSFSRKARTMAGMIPLTP 124 ++S S S + + T P++TS S++ ++ S+ +S S+ + + + T Sbjct: 205 TSSSSTSTSSSSTSTSSSSTSTSPSSTSTSSSLTSTSSSS--TSTSQSSTSTSSSSTSTS 262 Query: 123 PPSTLRMVTTFAWSPAAITLEFANTSTS 40 P ST ++ + SP++ + ++TSTS Sbjct: 263 PSSTSTSSSSTSTSPSSKSTSASSTSTS 290
>TBX2_MOUSE (Q60707) T-box transcription factor TBX2 (T-box protein 2)| Length = 701 Score = 27.3 bits (59), Expect = 10.0 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Frame = -3 Query: 237 VPATTSK*SAILASGP---SNFWSSFSRKARTMAGMIPLTPPPSTLRMVTTFA 88 +PAT++ +A A+G S F S + R IP+T PPST + T A Sbjct: 581 LPATSAAAAAAAAAGSLSRSPFLGSARPRLRFSPYQIPVTIPPSTSLLTTGLA 633
>DXR_ANASP (Q8YP49) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 399 Score = 27.3 bits (59), Expect = 10.0 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 149 IVLAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTVMLTA 274 +VL +EK KL D+ + F + G GGL ++LTA Sbjct: 135 VVLPLVEKHGVKLLPADSEHSAIFQCLQGVPKGGLKKILLTA 176
>YA2G_SCHPO (Q09706) Hypothetical protein C2F7.16c in chromosome I| Length = 1369 Score = 27.3 bits (59), Expect = 10.0 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = -2 Query: 118 VDAQDGHHLRLVTCCHHFGVC*HEHKL 38 +D Q+G LRL+ C + +C EH + Sbjct: 880 IDLQEGGSLRLIVECQYRSICHGEHSI 906
>TBX2_HUMAN (Q13207) T-box transcription factor TBX2 (T-box protein 2)| Length = 702 Score = 27.3 bits (59), Expect = 10.0 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Frame = -3 Query: 237 VPATTSK*SAILASGP---SNFWSSFSRKARTMAGMIPLTPPPSTLRMVTTFA 88 +PAT++ +A A+G S F S + R IP+T PPST + T A Sbjct: 580 LPATSAAAAAAAAAGSLSRSPFLGSARPRLRFSPYQIPVTIPPSTSLLTTGLA 632 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,227,230 Number of Sequences: 219361 Number of extensions: 568885 Number of successful extensions: 2330 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2265 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2321 length of database: 80,573,946 effective HSP length: 78 effective length of database: 63,463,788 effective search space used: 1523130912 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
