ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet76d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480206.1| Oryza sativa (japonica cultivar-group), mRNA 74 4e-11
2ref|NM_189076.2| Oryza sativa (japonica cultivar-group), mRNA 74 4e-11
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-11
4dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-11
5dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-11
6dbj|AK106763.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-11
7dbj|AK065259.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-11
8dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-09
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 66 9e-09
10emb|AL731763.1|CNS07YQA Oryza sativa chromosome 12, . BAC OSJNBa... 66 9e-09
11ref|NM_195879.1| Oryza sativa (japonica cultivar-group) putative... 58 2e-06
12gb|AC090441.3| Oryza sativa (japonica cultivar-group) chromosome... 58 2e-06
13tpg|BK000091.1| TPA: TPA_exp: Oryza sativa cellulose synthase-li... 58 2e-06
14dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-06
15gb|AF435645.2| Oryza sativa CSLF6 mRNA, partial cds 58 2e-06
16dbj|AK110467.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-06
17gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 58 2e-06
18ref|XM_478655.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.13
19dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.13
20dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.13
21emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2 40 0.51
22gb|AC108880.2| Homo sapiens chromosome X clone RP11-403L9 map p1... 38 2.0
23gb|AC091808.4| Homo sapiens chromosome X clone RP11-157D23 map p... 38 2.0
24gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 38 2.0
25gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 38 2.0
26ref|XM_473360.1| Oryza sativa (japonica cultivar-group), predic... 36 8.0
27ref|XM_370075.1| Magnaporthe grisea 70-15 hypothetical protein (... 36 8.0
28gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 36 8.0
29ref|XM_533558.2| PREDICTED: Canis familiaris similar to protein ... 36 8.0
30emb|Z83820.2|HS215K18 Human DNA sequence from clone RP1-215K18 o... 36 8.0
31gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 36 8.0
32emb|AL606695.3|OSJN00112 Oryza sativa genomic DNA, chromosome 4,... 36 8.0
33emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4,... 36 8.0
34gb|AC163354.3| Mus musculus BAC clone RP23-49E21 from chromosome... 36 8.0
35gb|AC151612.2| Emiliania huxleyi clone JGIACCU-13I1, complete se... 36 8.0
36gb|AC068647.10| Homo sapiens 3 BAC RP11-64D22 (Roswell Park Canc... 36 8.0
37gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 36 8.0
38gb|AC152833.3| Ornithorhynchus anatinus BAC clone OABb-6A1 from ... 36 8.0
39gb|AC116026.1| Homo sapiens 3 BAC RP11-3F11 (Roswell Park Cancer... 36 8.0
40dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 36 8.0
41gb|AC008280.4| Homo sapiens BAC clone RP11-477N3 from 2, complet... 36 8.0
42gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 36 8.0
43gb|AC149216.5| Mus musculus BAC clone RP24-194H8 from 18, comple... 36 8.0 
>ref|XM_480206.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2084

 Score = 73.8 bits (37), Expect = 4e-11
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                         
Query: 4    tacatcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
            |||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1632 tacatcaacaactcccaggcgctccgcgccggcatctgcttcatg 1588
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>ref|NM_189076.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3707

 Score = 73.8 bits (37), Expect = 4e-11
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                         
Query: 4    tacatcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
            |||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1608 tacatcaacaactcccaggcgctccgcgccggcatctgcttcatg 1652
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 73.8 bits (37), Expect = 4e-11
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                            
Query: 4       tacatcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
               |||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 3540132 tacatcaacaactcccaggcgctccgcgccggcatctgcttcatg 3540088
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>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0577B11
          Length = 180355

 Score = 73.8 bits (37), Expect = 4e-11
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                          
Query: 4     tacatcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
             |||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 18638 tacatcaacaactcccaggcgctccgcgccggcatctgcttcatg 18594
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>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0672D01
          Length = 146954

 Score = 73.8 bits (37), Expect = 4e-11
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                          
Query: 4     tacatcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
             |||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 95849 tacatcaacaactcccaggcgctccgcgccggcatctgcttcatg 95805
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>dbj|AK106763.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-E08, full
            insert sequence
          Length = 2084

 Score = 73.8 bits (37), Expect = 4e-11
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                         
Query: 4    tacatcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
            |||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1632 tacatcaacaactcccaggcgctccgcgccggcatctgcttcatg 1588
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>dbj|AK065259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J18, full
            insert sequence
          Length = 3707

 Score = 73.8 bits (37), Expect = 4e-11
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                         
Query: 4    tacatcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
            |||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1608 tacatcaacaactcccaggcgctccgcgccggcatctgcttcatg 1652
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 65.9 bits (33), Expect = 9e-09
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                         
Query: 8        tcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
                |||||||||| |||||||| |||||||||||||||||||||
Sbjct: 17408565 tcaacaactcgcaggccctccgcgccggcatctgcttcatg 17408525
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 65.9 bits (33), Expect = 9e-09
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                         
Query: 8        tcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
                |||||||||| |||||||| |||||||||||||||||||||
Sbjct: 17362936 tcaacaactcgcaggccctccgcgccggcatctgcttcatg 17362896
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>emb|AL731763.1|CNS07YQA Oryza sativa chromosome 12, . BAC OSJNBa0090O14 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 129619

 Score = 65.9 bits (33), Expect = 9e-09
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                       
Query: 8      tcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
              |||||||||| |||||||| |||||||||||||||||||||
Sbjct: 123841 tcaacaactcgcaggccctccgcgccggcatctgcttcatg 123881
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>ref|NM_195879.1| Oryza sativa (japonica cultivar-group) putative cellulose synthase
            D-like protein (OSJNBb0052C09.2), mRNA
          Length = 2493

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                     
Query: 8    tcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
            |||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 1115 tcaacaactcgcaggccctccgcgccggcatttgcttcatg 1155
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>gb|AC090441.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0052C09, complete sequence
          Length = 139468

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 8     tcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
             |||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 19232 tcaacaactcgcaggccctccgcgccggcatttgcttcatg 19192
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>tpg|BK000091.1| TPA: TPA_exp: Oryza sativa cellulose synthase-like F7 gene, complete
            cds
          Length = 11160

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                     
Query: 8    tcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
            |||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 6929 tcaacaactcgcaggccctccgcgccggcatttgcttcatg 6969
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                        
Query: 8       tcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
               |||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 9666707 tcaacaactcgcaggccctccgcgccggcatttgcttcatg 9666667
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>gb|AF435645.2| Oryza sativa CSLF6 mRNA, partial cds
          Length = 2135

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 12 caactcccaggcccttcgcgccggcatctgcttcatg 48
          |||||||||||| || |||||||||||||||||||||
Sbjct: 1  caactcccaggcgctccgcgccggcatctgcttcatg 37
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>dbj|AK110467.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-G08, full
            insert sequence
          Length = 2729

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                     
Query: 8    tcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
            |||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 1153 tcaacaactcgcaggccctccgcgccggcatttgcttcatg 1193
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                        
Query: 8       tcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
               |||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 9672746 tcaacaactcgcaggccctccgcgccggcatttgcttcatg 9672706
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>ref|XM_478655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2655

 Score = 42.1 bits (21), Expect = 0.13
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                         
Query: 4    tacatcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
            ||||||||||||||||||||  | ||||||| | | |||||||||
Sbjct: 1198 tacatcaacaactcccaggcgttccgcgccgccctgtgcttcatg 1242
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 0.13
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 4        tacatcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
                ||||||||||||||||||||  | ||||||| | | |||||||||
Sbjct: 21849521 tacatcaacaactcccaggcgttccgcgccgccctgtgcttcatg 21849477
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>dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0041B22
          Length = 142446

 Score = 42.1 bits (21), Expect = 0.13
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 4     tacatcaacaactcccaggcccttcgcgccggcatctgcttcatg 48
             ||||||||||||||||||||  | ||||||| | | |||||||||
Sbjct: 63197 tacatcaacaactcccaggcgttccgcgccgccctgtgcttcatg 63153
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>emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2
          Length = 223670

 Score = 40.1 bits (20), Expect = 0.51
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 28     cgcgccggcatctgcttcatggtg 51
              ||||||||||||| ||||||||||
Sbjct: 216922 cgcgccggcatcttcttcatggtg 216945
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>gb|AC108880.2| Homo sapiens chromosome X clone RP11-403L9 map p11.4, complete sequence
          Length = 218413

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 8      tcaacaactcccaggccct 26
              |||||||||||||||||||
Sbjct: 106669 tcaacaactcccaggccct 106687
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>gb|AC091808.4| Homo sapiens chromosome X clone RP11-157D23 map p11.4, complete sequence
          Length = 170219

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 8      tcaacaactcccaggccct 26
              |||||||||||||||||||
Sbjct: 165034 tcaacaactcccaggccct 165052
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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 34      ggcatctgcttcatggtgg 52
               |||||||||||||||||||
Sbjct: 3374720 ggcatctgcttcatggtgg 3374738
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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130,
              chromosome I, complete sequence
          Length = 4277185

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 34     ggcatctgcttcatggtgg 52
              |||||||||||||||||||
Sbjct: 922225 ggcatctgcttcatggtgg 922207
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>ref|XM_473360.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1182

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 32  ccggcatctgcttcatgg 49
           ||||||||||||||||||
Sbjct: 823 ccggcatctgcttcatgg 806
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>ref|XM_370075.1| Magnaporthe grisea 70-15 hypothetical protein (MG06590.4) partial
            mRNA
          Length = 3168

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 9    caacaactcccaggccct 26
            ||||||||||||||||||
Sbjct: 1431 caacaactcccaggccct 1448
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 22      gcccttcgcgccggcatc 39
               ||||||||||||||||||
Sbjct: 1904861 gcccttcgcgccggcatc 1904844
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>ref|XM_533558.2| PREDICTED: Canis familiaris similar to protein tyrosine phosphatase
           domain containing 1 protein isoform 1 (LOC476357), mRNA
          Length = 2631

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 33  cggcatctgcttcatggt 50
           ||||||||||||||||||
Sbjct: 937 cggcatctgcttcatggt 954
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>emb|Z83820.2|HS215K18 Human DNA sequence from clone RP1-215K18 on chromosome Xq21 Contains a
              novel gene, the gene for a novel protein, an
              ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)
              (UBE2D2) pseudogene and a CpG island, complete sequence
          Length = 171636

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 37     atctgcttcatggtggga 54
              ||||||||||||||||||
Sbjct: 165365 atctgcttcatggtggga 165382
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 31     gccggcatctgcttcatg 48
              ||||||||||||||||||
Sbjct: 730948 gccggcatctgcttcatg 730965
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>emb|AL606695.3|OSJN00112 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08,
            complete sequence
          Length = 140449

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 32   ccggcatctgcttcatgg 49
            ||||||||||||||||||
Sbjct: 2256 ccggcatctgcttcatgg 2239
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>emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07,
              complete sequence
          Length = 143585

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 32     ccggcatctgcttcatgg 49
              ||||||||||||||||||
Sbjct: 127314 ccggcatctgcttcatgg 127297
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>gb|AC163354.3| Mus musculus BAC clone RP23-49E21 from chromosome 12, complete sequence
          Length = 248060

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 5      acatcaacaactcccagg 22
              ||||||||||||||||||
Sbjct: 172270 acatcaacaactcccagg 172287
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>gb|AC151612.2| Emiliania huxleyi clone JGIACCU-13I1, complete sequence
          Length = 35427

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 28   cgcgccggcatctgcttc 45
            ||||||||||||||||||
Sbjct: 2754 cgcgccggcatctgcttc 2737
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>gb|AC068647.10| Homo sapiens 3 BAC RP11-64D22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 132745

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 4      tacatcaacaactcccag 21
              ||||||||||||||||||
Sbjct: 120330 tacatcaacaactcccag 120313
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 29      gcgccggcatctgcttcatggt 50
               ||||||||||| ||||||||||
Sbjct: 2103532 gcgccggcatcggcttcatggt 2103553
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>gb|AC152833.3| Ornithorhynchus anatinus BAC clone OABb-6A1 from chromosome unknown,
             complete sequence
          Length = 141309

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 13    aactcccaggcccttcgc 30
             ||||||||||||||||||
Sbjct: 63836 aactcccaggcccttcgc 63853
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>gb|AC116026.1| Homo sapiens 3 BAC RP11-3F11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 90343

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     tacatcaacaactcccag 21
             ||||||||||||||||||
Sbjct: 77929 tacatcaacaactcccag 77912
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 32       ccggcatctgcttcatgg 49
                ||||||||||||||||||
Sbjct: 27059613 ccggcatctgcttcatgg 27059596
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>gb|AC008280.4| Homo sapiens BAC clone RP11-477N3 from 2, complete sequence
          Length = 180595

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 38     tctgcttcatggtgggac 55
              ||||||||||||||||||
Sbjct: 112391 tctgcttcatggtgggac 112408
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 20      aggcccttcgcgccggca 37
               ||||||||||||||||||
Sbjct: 3749937 aggcccttcgcgccggca 3749920
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>gb|AC149216.5| Mus musculus BAC clone RP24-194H8 from 18, complete sequence
          Length = 193186

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 31    gccggcatctgcttcatg 48
             ||||||||||||||||||
Sbjct: 38753 gccggcatctgcttcatg 38770


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 434,691
Number of Sequences: 3902068
Number of extensions: 434691
Number of successful extensions: 26879
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26639
Number of HSP's gapped (non-prelim): 240
length of query: 57
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 36
effective length of database: 17,151,101,840
effective search space: 617439666240
effective search space used: 617439666240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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