| Clone Name | baet76a06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464899.1| Oryza sativa (japonica cultivar-group), mRNA Length = 936 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 269 cccgctaaagccgccgccggcgcaccattaccgacagcagc 309 |||||| |||||||||||||||||||| ||| | ||||||| Sbjct: 144 cccgctcaagccgccgccggcgcaccagtacaggcagcagc 184
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 269 cccgctaaagccgccgccggcgcaccattaccgacagcagc 309 |||||| |||||||||||||||||||| ||| | ||||||| Sbjct: 9105868 cccgctcaagccgccgccggcgcaccagtacaggcagcagc 9105908
>dbj|AP005777.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0026F09 Length = 124371 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 269 cccgctaaagccgccgccggcgcaccattaccgacagcagc 309 |||||| |||||||||||||||||||| ||| | ||||||| Sbjct: 8631 cccgctcaagccgccgccggcgcaccagtacaggcagcagc 8671
>ref|NM_190242.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 558 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 306 cagcgcggcggcggggcgccgc 327 |||||||||||||||||||||| Sbjct: 232 cagcgcggcggcggggcgccgc 253
>gb|DQ145546.1| Sinorhizobium meliloti plasmid pSmeSM11a, complete sequence Length = 144170 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 298 accgacagcagcgcggcggcgg 319 |||||||||||||||||||||| Sbjct: 36134 accgacagcagcgcggcggcgg 36155
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 306 cagcgcggcggcggggcgccgc 327 |||||||||||||||||||||| Sbjct: 38841137 cagcgcggcggcggggcgccgc 38841116
>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1078G07 Length = 199457 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 306 cagcgcggcggcggggcgccgc 327 |||||||||||||||||||||| Sbjct: 114019 cagcgcggcggcggggcgccgc 113998
>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696G06 Length = 142571 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 306 cagcgcggcggcggggcgccgc 327 |||||||||||||||||||||| Sbjct: 5923 cagcgcggcggcggggcgccgc 5902
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 cagcgccggcaaggacgacgc 225 ||||||||||||||||||||| Sbjct: 1530456 cagcgccggcaaggacgacgc 1530476
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 203 gccagcgccggcaaggacgacgccg 227 |||||||||||||| |||||||||| Sbjct: 20312458 gccagcgccggcaacgacgacgccg 20312482
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 gcgcggcggcggggcgccgcg 328 ||||||||||||||||||||| Sbjct: 6225081 gcgcggcggcggggcgccgcg 6225061
>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0436F11 Length = 165550 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 gcgcggcggcggggcgccgcg 328 ||||||||||||||||||||| Sbjct: 138900 gcgcggcggcggggcgccgcg 138880
>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0516A04 Length = 145107 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 gcgcggcggcggggcgccgcg 328 ||||||||||||||||||||| Sbjct: 19157 gcgcggcggcggggcgccgcg 19137
>dbj|AP005105.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0052O11 Length = 106467 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 203 gccagcgccggcaaggacgacgccg 227 |||||||||||||| |||||||||| Sbjct: 55069 gccagcgccggcaacgacgacgccg 55093
>dbj|AP004573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0678G09 Length = 139220 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 203 gccagcgccggcaaggacgacgccg 227 |||||||||||||| |||||||||| Sbjct: 21358 gccagcgccggcaacgacgacgccg 21382
>dbj|AK071512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023098N15, full insert sequence Length = 1499 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 gccagcgccggcaaggacgacgccg 227 |||||||||||||| |||||||||| Sbjct: 1094 gccagcgccggcaacgacgacgccg 1070
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 ccgacagcagcgcggcggcgg 319 ||||||||||||||||||||| Sbjct: 1190651 ccgacagcagcgcggcggcgg 1190671
>dbj|AK058664.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-G07, full insert sequence Length = 1610 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 308 gcgcggcggcggggcgccgcg 328 ||||||||||||||||||||| Sbjct: 171 gcgcggcggcggggcgccgcg 191
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 cagcagcgcggcggcggggc 322 |||||||||||||||||||| Sbjct: 2231782 cagcagcgcggcggcggggc 2231763
>ref|XM_482881.1| Oryza sativa (japonica cultivar-group), mRNA Length = 675 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 cgacagcagcgcggcggcgg 319 |||||||||||||||||||| Sbjct: 535 cgacagcagcgcggcggcgg 516
>ref|XM_525737.1| PREDICTED: Pan troglodytes LOC470355 (LOC470355), mRNA Length = 2655 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 gcagcgggtgctccggccgc 365 |||||||||||||||||||| Sbjct: 2377 gcagcgggtgctccggccgc 2358
>gb|AF450481.1| Zea mays DREB-like protein (DREB1A) mRNA, complete cds Length = 1085 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 gcggcggcggggcgccgcgg 329 |||||||||||||||||||| Sbjct: 320 gcggcggcggggcgccgcgg 339
>gb|BC030087.2| Homo sapiens hypothetical protein LOC375196, mRNA (cDNA clone IMAGE:4792618), partial cds Length = 1070 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 gcagcgggtgctccggccgc 365 |||||||||||||||||||| Sbjct: 21 gcagcgggtgctccggccgc 40
>emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0005B05, complete sequence Length = 149134 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 gcagcgcggcggcggggcgc 324 |||||||||||||||||||| Sbjct: 141192 gcagcgcggcggcggggcgc 141173
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 cagcagcgcggcggcggggcgccg 326 |||||||||||||||| ||||||| Sbjct: 24101 cagcagcgcggcggcgaggcgccg 24124
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 cgccggcaaggacgacgccg 227 |||||||||||||||||||| Sbjct: 3146508 cgccggcaaggacgacgccg 3146527
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 gcagcgcggcggcggggcgc 324 |||||||||||||||||||| Sbjct: 6978321 gcagcgcggcggcggggcgc 6978302
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 gcagcgcggcggcggggcgc 324 |||||||||||||||||||| Sbjct: 7707974 gcagcgcggcggcggggcgc 7707955 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 gcagcgcggcggcggggcgc 324 |||||||||||||||||||| Sbjct: 3297246 gcagcgcggcggcggggcgc 3297227
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 cgacagcagcgcggcggcgg 319 |||||||||||||||||||| Sbjct: 23087446 cgacagcagcgcggcggcgg 23087465 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 cgacagcagcgcggcggcgg 319 |||||||||||||||||||| Sbjct: 2238351 cgacagcagcgcggcggcgg 2238370
>gb|AC019171.4| Homo sapiens BAC clone RP11-173C1 from 2, complete sequence Length = 180445 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 gcagcgggtgctccggccgc 365 |||||||||||||||||||| Sbjct: 33703 gcagcgggtgctccggccgc 33684
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gcggcggcggggcgccgcgg 329 |||||||||||||||||||| Sbjct: 1730176 gcggcggcggggcgccgcgg 1730157 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 gcgcggcggcggggcgccgc 327 |||||||||||||||||||| Sbjct: 1444694 gcgcggcggcggggcgccgc 1444675 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 gcagcgcggcggcggggcgc 324 |||||||||||||||||||| Sbjct: 1221242 gcagcgcggcggcggggcgc 1221261
>dbj|AP004693.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0461F06 Length = 147891 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 cgacagcagcgcggcggcgg 319 |||||||||||||||||||| Sbjct: 10545 cgacagcagcgcggcggcgg 10564
>dbj|AK193921.1| Mus musculus cDNA, clone:Y1G0113M05, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000023433, based on BLAT search Length = 306 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 agcccaaaaccaaggccacc 185 |||||||||||||||||||| Sbjct: 75 agcccaaaaccaaggccacc 94
>dbj|AP005729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0069P02 Length = 163033 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 gcagcgcggcggcggggcgc 324 |||||||||||||||||||| Sbjct: 13178 gcagcgcggcggcggggcgc 13159
>dbj|AP005971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0079K11 Length = 130082 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 gcagcgcggcggcggggcgc 324 |||||||||||||||||||| Sbjct: 75536 gcagcgcggcggcggggcgc 75517
>dbj|AP005892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0011D16 Length = 177329 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 gcagcgcggcggcggggcgc 324 |||||||||||||||||||| Sbjct: 173559 gcagcgcggcggcggggcgc 173540
>dbj|AP003911.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1368_G08 Length = 107074 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 cgacagcagcgcggcggcgg 319 |||||||||||||||||||| Sbjct: 36478 cgacagcagcgcggcggcgg 36497
>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470B03 Length = 163371 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 cgacagcagcgcggcggcgg 319 |||||||||||||||||||| Sbjct: 147174 cgacagcagcgcggcggcgg 147193
>dbj|AK110089.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-160-G08, full insert sequence Length = 3663 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 gcccaaaaccaaggccaccg 186 |||||||||||||||||||| Sbjct: 139 gcccaaaaccaaggccaccg 158
>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence Length = 412348 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 200 ctcgccagcgccggcaaggacgacgccg 227 ||||||||||||||| || ||||||||| Sbjct: 171322 ctcgccagcgccggccagaacgacgccg 171349 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,930,527 Number of Sequences: 3902068 Number of extensions: 2930527 Number of successful extensions: 63059 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61639 Number of HSP's gapped (non-prelim): 1420 length of query: 376 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 354 effective length of database: 17,147,199,772 effective search space: 6070108719288 effective search space used: 6070108719288 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)