>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = -2

Query: 261  PRPHGSPLPPVATTSDTLCSSSSM 190
            PRP G PLPP   T    CSS SM
Sbjct: 3513 PRPAGGPLPPGGDTCPQFCSSHSM 3536

>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox|
           protein NK-1)
          Length = 659

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -2

Query: 261 PRPHGSPLPPVATTSDTLCSSSSM*MEPNPAKKPITDDSAPVMEARDHSRP 109
           P PH  P P  +        SSS    P+PA  P++  ++P M +     P
Sbjct: 224 PHPHPHPHPHPSAVFHLRAPSSSSTAPPSPATSPLSPPTSPAMHSDQQMSP 274

>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription|
           factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus)
           (Mammalian branch point-binding protein mBBP) (BBP)
           (CW17)
          Length = 653

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -2

Query: 261 PRPHGSPLPPVATTSDTLC---SSSSM*MEPNPAKK-PITDDSAPVMEARDHSRP 109
           P P G+P PP  +    LC   S +S+ + PN A + P      P  E+ D  RP
Sbjct: 576 PLPPGAPPPPTCSIECLLCLLSSPNSLCLSPNRAARIPPRGSDGPSHESEDFPRP 630

>UBP28_MOUSE (Q5I043) Ubiquitin carboxyl-terminal hydrolase 28 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 28)
           (Ubiquitin-specific-processing protease 28)
           (Deubiquitinating enzyme 28)
          Length = 1051

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 284 TPNKKLETPAPMAPRFLQSQRPQTPFVVVVVCRW 183
           +P+  LETPAP APR +  +  +  FV   + RW
Sbjct: 522 SPHSSLETPAPPAPRTVTDE--EMNFVKTCLQRW 553

>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2
          Length = 863

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 255 PHGSPLPPVATTSDTLCSSSSM*MEPNPAKKPITDDSAPVMEARDHSRP 109
           PHG+P P  A ++    SS+     P     P T  +AP  + RD + P
Sbjct: 800 PHGAPAPSPAASARPASSST-----PRLGPAPTTRTAAPSPDRRDSASP 843

>PCGF2_MOUSE (P23798) Polycomb group RING finger protein 2 (DNA-binding protein|
           Mel-18) (RING finger protein 110) (Zinc finger protein
           144) (Zfp-144)
          Length = 342

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
 Frame = -2

Query: 240 LPPVATTSDTLCSSSSM*ME------PNPAKKPITDDSAPVMEARDHSRPSTNG 97
           LP V T S+   +S +   E      P+PA  P T  S P      H  PS++G
Sbjct: 238 LPTVPTPSEGTNTSGASECESVSDKAPSPATLPATSSSLPSPATPSHGSPSSHG 291

>GATA_METTH (O27540) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 454

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -2

Query: 162 PITDDSAPVMEARDHSRPSTNGILREFVPLHRKAMNECVVGE 37
           P T DS+P +E     +    G++REF+ +  +A++E + G+
Sbjct: 236 PTTLDSSPDLEVERELKGLRVGVVREFLEVTDEAIDEVIQGK 277


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,689,082
Number of Sequences: 219361
Number of extensions: 906869
Number of successful extensions: 2821
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2817
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)