ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet75h02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197413.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0028C01.26), mRNA Length = 1307 Score = 151 bits (76), Expect = 2e-33 Identities = 98/104 (94%), Gaps = 1/104 (0%) Strand = Plus / Plus Query: 319 gcgggcctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcg 378 ||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| Sbjct: 309 gcgggtctgggcgacctgccggagctgtgcgcggcggaggtgctgctccggctcgacgcg 368 Query: 379 ccggagatctgccgcctcgcgcggctc-accacgcgttccgcgg 421 |||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 369 ccggagatctgccggctcgcgcggctcaaccacgcgttccgcgg 412
>gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 genomic sequence, complete sequence Length = 137366 Score = 151 bits (76), Expect = 2e-33 Identities = 98/104 (94%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 319 gcgggcctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcg 378 ||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| Sbjct: 44195 gcgggtctgggcgacctgccggagctgtgcgcggcggaggtgctgctccggctcgacgcg 44136 Query: 379 ccggagatctgccgcctcgcgcggctc-accacgcgttccgcgg 421 |||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 44135 ccggagatctgccggctcgcgcggctcaaccacgcgttccgcgg 44092
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 151 bits (76), Expect = 2e-33 Identities = 98/104 (94%), Gaps = 1/104 (0%) Strand = Plus / Plus Query: 319 gcgggcctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcg 378 ||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| Sbjct: 19733317 gcgggtctgggcgacctgccggagctgtgcgcggcggaggtgctgctccggctcgacgcg 19733376 Query: 379 ccggagatctgccgcctcgcgcggctc-accacgcgttccgcgg 421 |||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 19733377 ccggagatctgccggctcgcgcggctcaaccacgcgttccgcgg 19733420
>dbj|AK071847.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120I24, full insert sequence Length = 994 Score = 151 bits (76), Expect = 2e-33 Identities = 98/104 (94%), Gaps = 1/104 (0%) Strand = Plus / Plus Query: 319 gcgggcctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcg 378 ||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| Sbjct: 301 gcgggtctgggcgacctgccggagctgtgcgcggcggaggtgctgctccggctcgacgcg 360 Query: 379 ccggagatctgccgcctcgcgcggctc-accacgcgttccgcgg 421 |||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 361 ccggagatctgccggctcgcgcggctcaaccacgcgttccgcgg 404
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 151 bits (76), Expect = 2e-33 Identities = 98/104 (94%), Gaps = 1/104 (0%) Strand = Plus / Plus Query: 319 gcgggcctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcg 378 ||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| Sbjct: 19744593 gcgggtctgggcgacctgccggagctgtgcgcggcggaggtgctgctccggctcgacgcg 19744652 Query: 379 ccggagatctgccgcctcgcgcggctc-accacgcgttccgcgg 421 |||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 19744653 ccggagatctgccggctcgcgcggctcaaccacgcgttccgcgg 19744696
>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0056G13, complete sequence Length = 148011 Score = 91.7 bits (46), Expect = 2e-15 Identities = 86/98 (87%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 325 ctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcgccggag 384 |||||||| ||||||||||| |||||||| |||||||||| | || |||||||||||| Sbjct: 78116 ctgggcgagctgccggagctgtgcgccgccgaggtgctgctgcacctggacgcgccggag 78175 Query: 385 atctgccgcctcgcgcggctc-accacgcgttccgcgg 421 || ||||| |||||||||||| ||| |||||||||||| Sbjct: 78176 atatgccggctcgcgcggctcaaccgcgcgttccgcgg 78213
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 91.7 bits (46), Expect = 2e-15 Identities = 86/98 (87%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 325 ctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcgccggag 384 |||||||| ||||||||||| |||||||| |||||||||| | || |||||||||||| Sbjct: 922919 ctgggcgagctgccggagctgtgcgccgccgaggtgctgctgcacctggacgcgccggag 922978 Query: 385 atctgccgcctcgcgcggctc-accacgcgttccgcgg 421 || ||||| |||||||||||| ||| |||||||||||| Sbjct: 922979 atatgccggctcgcgcggctcaaccgcgcgttccgcgg 923016
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 91.7 bits (46), Expect = 2e-15 Identities = 86/98 (87%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 325 ctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcgccggag 384 |||||||| ||||||||||| |||||||| |||||||||| | || |||||||||||| Sbjct: 922917 ctgggcgagctgccggagctgtgcgccgccgaggtgctgctgcacctggacgcgccggag 922976 Query: 385 atctgccgcctcgcgcggctc-accacgcgttccgcgg 421 || ||||| |||||||||||| ||| |||||||||||| Sbjct: 922977 atatgccggctcgcgcggctcaaccgcgcgttccgcgg 923014
>dbj|AK106276.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-H04, full insert sequence Length = 1621 Score = 91.7 bits (46), Expect = 2e-15 Identities = 86/98 (87%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 325 ctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcgccggag 384 |||||||| ||||||||||| |||||||| |||||||||| | || |||||||||||| Sbjct: 499 ctgggcgagctgccggagctgtgcgccgccgaggtgctgctgcacctggacgcgccggag 558 Query: 385 atctgccgcctcgcgcggctc-accacgcgttccgcgg 421 || ||||| |||||||||||| ||| |||||||||||| Sbjct: 559 atatgccggctcgcgcggctcaaccgcgcgttccgcgg 596
>gb|AY106517.1| Zea mays PCO071075 mRNA sequence Length = 1699 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 325 ctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcgccggag 384 |||||||||||||||||| ||||| |||| ||||||||||| |||| ||| ||| |||| Sbjct: 593 ctgggcgacctgccggagaactgcgtcgcggaggtgctgctcaggctggacccgctggag 652 Query: 385 atctgccgcctcgcgcggctca 406 |||||||| | |||||||||| Sbjct: 653 atctgccggatggcgcggctca 674
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 60.0 bits (30), Expect = 6e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 325 ctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcgccggag 384 ||||| |||||||||||| ||||| ||| ||||||||| | |||| ||| |||||||| Sbjct: 20223504 ctgggggacctgccggagagctgcgtggcggaggtgctgcgcaggctggacccgccggag 20223445 Query: 385 atctgccgcctcgcgcggctca 406 |||||||| | |||||||||| Sbjct: 20223444 atctgccggatggcgcggctca 20223423
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 60.0 bits (30), Expect = 6e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 325 ctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcgccggag 384 ||||| |||||||||||| ||||| ||| ||||||||| | |||| ||| |||||||| Sbjct: 2631 ctgggggacctgccggagagctgcgtggcggaggtgctgcgcaggctggacccgccggag 2572 Query: 385 atctgccgcctcgcgcggctca 406 |||||||| | |||||||||| Sbjct: 2571 atctgccggatggcgcggctca 2550
>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0047P18 Length = 169128 Score = 60.0 bits (30), Expect = 6e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 325 ctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcgccggag 384 ||||| |||||||||||| ||||| ||| ||||||||| | |||| ||| |||||||| Sbjct: 117004 ctgggggacctgccggagagctgcgtggcggaggtgctgcgcaggctggacccgccggag 116945 Query: 385 atctgccgcctcgcgcggctca 406 |||||||| | |||||||||| Sbjct: 116944 atctgccggatggcgcggctca 116923
>dbj|AK066620.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073O17, full insert sequence Length = 1575 Score = 60.0 bits (30), Expect = 6e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 325 ctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcgccggag 384 ||||| |||||||||||| ||||| ||| ||||||||| | |||| ||| |||||||| Sbjct: 515 ctgggggacctgccggagagctgcgtggcggaggtgctgcgcaggctggacccgccggag 574 Query: 385 atctgccgcctcgcgcggctca 406 |||||||| | |||||||||| Sbjct: 575 atctgccggatggcgcggctca 596
>emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088I22, complete sequence Length = 164572 Score = 52.0 bits (26), Expect = 0.001 Identities = 56/66 (84%) Strand = Plus / Minus Query: 325 ctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcgccggag 384 ||||||||| |||||||| ||||| |||| |||||||||| |||||| |||||||| Sbjct: 66076 ctgggcgacatgccggagagctgcgtcgcggcggtgctgctctacctcgacccgccggag 66017 Query: 385 atctgc 390 |||||| Sbjct: 66016 atctgc 66011
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 52.0 bits (26), Expect = 0.001 Identities = 56/66 (84%) Strand = Plus / Plus Query: 325 ctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcgccggag 384 ||||||||| |||||||| ||||| |||| |||||||||| |||||| |||||||| Sbjct: 28724882 ctgggcgacatgccggagagctgcgtcgcggcggtgctgctctacctcgacccgccggag 28724941 Query: 385 atctgc 390 |||||| Sbjct: 28724942 atctgc 28724947
>dbj|AK119923.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-G10, full insert sequence Length = 1456 Score = 52.0 bits (26), Expect = 0.001 Identities = 56/66 (84%) Strand = Plus / Plus Query: 325 ctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcgccggag 384 ||||||||| |||||||| ||||| |||| |||||||||| |||||| |||||||| Sbjct: 498 ctgggcgacatgccggagagctgcgtcgcggcggtgctgctctacctcgacccgccggag 557 Query: 385 atctgc 390 |||||| Sbjct: 558 atctgc 563
>dbj|AK099216.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081J09, full insert sequence Length = 1684 Score = 52.0 bits (26), Expect = 0.001 Identities = 56/66 (84%) Strand = Plus / Plus Query: 325 ctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcgccggag 384 ||||||||| |||||||| ||||| |||| |||||||||| |||||| |||||||| Sbjct: 468 ctgggcgacatgccggagagctgcgtcgcggcggtgctgctctacctcgacccgccggag 527 Query: 385 atctgc 390 |||||| Sbjct: 528 atctgc 533
>dbj|AK064611.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-B11, full insert sequence Length = 1715 Score = 52.0 bits (26), Expect = 0.001 Identities = 56/66 (84%) Strand = Plus / Plus Query: 325 ctgggcgacctgccggagctctgcgccgcgcaggtgctgctccggctcgacgcgccggag 384 ||||||||| |||||||| ||||| |||| |||||||||| |||||| |||||||| Sbjct: 498 ctgggcgacatgccggagagctgcgtcgcggcggtgctgctctacctcgacccgccggag 557 Query: 385 atctgc 390 |||||| Sbjct: 558 atctgc 563
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Minus Query: 15 ttttatttatctcccacctttcctctc 41 ||||||||| ||||||||||||||||| Sbjct: 26356064 ttttatttagctcccacctttcctctc 26356038
>dbj|AP003749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_D11 Length = 109399 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Minus Query: 15 ttttatttatctcccacctttcctctc 41 ||||||||| ||||||||||||||||| Sbjct: 10304 ttttatttagctcccacctttcctctc 10278
>gb|AC120884.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0017D19, complete sequence Length = 142015 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 280 ggcgttggcggcccggcggcgg 301 |||||||||||||||||||||| Sbjct: 34781 ggcgttggcggcccggcggcgg 34802
>emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 in linkage group 15, complete sequence Length = 205794 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 188 tacatactactactactacaaa 209 |||||||||||||||||||||| Sbjct: 97165 tacatactactactactacaaa 97186
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 280 ggcgttggcggcccggcggcgg 301 |||||||||||||||||||||| Sbjct: 22603995 ggcgttggcggcccggcggcgg 22604016 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 tgctgctccggctcgacgcg 378 |||||||||||||||||||| Sbjct: 17472955 tgctgctccggctcgacgcg 17472936
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 280 ggcgttggcggcccggcggcgg 301 |||||||||||||||||||||| Sbjct: 22913906 ggcgttggcggcccggcggcgg 22913927 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 tgctgctccggctcgacgcg 378 |||||||||||||||||||| Sbjct: 17566665 tgctgctccggctcgacgcg 17566646
>ref|XM_465098.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1605 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 cggcggcggaggctgcgccgg 313 ||||||||||||||||||||| Sbjct: 159 cggcggcggaggctgcgccgg 179
>gb|DQ249342.1| Streptomyces hygroscopicus subsp. duamyceticus strain JCM4427 unknown polyketide biosynthetic gene cluster, partial sequence; and AHBA biosynthesis gene cluster, complete sequence Length = 55488 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 ggtgctgcgggcctgggcgac 333 ||||||||||||||||||||| Sbjct: 52274 ggtgctgcgggcctgggcgac 52254
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 312 gggtgctgcgggcctgggcgacctgccgg 340 ||||||||||||||| || |||||||||| Sbjct: 100926 gggtgctgcgggcctcggggacctgccgg 100898
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 cggcggcggaggctgcgccgg 313 ||||||||||||||||||||| Sbjct: 11477666 cggcggcggaggctgcgccgg 11477686
>dbj|AP005534.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0030M21 Length = 155970 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 cggcggcggaggctgcgccgg 313 ||||||||||||||||||||| Sbjct: 60158 cggcggcggaggctgcgccgg 60178
>dbj|AK105486.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-B08, full insert sequence Length = 1605 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 cggcggcggaggctgcgccgg 313 ||||||||||||||||||||| Sbjct: 159 cggcggcggaggctgcgccgg 179
>gb|AF506521.1| Streptomyces hygroscopicus ShnO gene, complete cds Length = 1101 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 ggtgctgcgggcctgggcgac 333 ||||||||||||||||||||| Sbjct: 1002 ggtgctgcgggcctgggcgac 982
>gb|AC150426.3| Branchiostoma floridae clone CH302-83B17, complete sequence Length = 192173 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ctacatactactactactac 206 |||||||||||||||||||| Sbjct: 101332 ctacatactactactactac 101313
>ref|XM_473560.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 840 Score = 40.1 bits (20), Expect = 5.6 Identities = 47/56 (83%) Strand = Plus / Plus Query: 335 tgccggagctctgcgccgcgcaggtgctgctccggctcgacgcgccggagatctgc 390 |||||||| ||||| |||| |||||||||| |||||| |||||||||||||| Sbjct: 2 tgccggagagctgcgtcgcggcggtgctgctctacctcgacccgccggagatctgc 57
>gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete sequence Length = 183990 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 ttcctctccgacgacgcatt 53 |||||||||||||||||||| Sbjct: 93421 ttcctctccgacgacgcatt 93402
>gb|AC136377.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0028G07, complete sequence Length = 157463 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 tgctgctccggctcgacgcg 378 |||||||||||||||||||| Sbjct: 66969 tgctgctccggctcgacgcg 66950
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 gatctgccgcctcgcgcggc 403 |||||||||||||||||||| Sbjct: 287402 gatctgccgcctcgcgcggc 287383
>emb|CR759874.20| Zebrafish DNA sequence from clone CH211-214H24 in linkage group 20, complete sequence Length = 223471 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 actactactactacaaaggg 212 |||||||||||||||||||| Sbjct: 12860 actactactactacaaaggg 12879
>emb|CR848816.11| Zebrafish DNA sequence from clone DKEY-99F10 in linkage group 11, complete sequence Length = 158354 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ctacatactactactactac 206 |||||||||||||||||||| Sbjct: 1270 ctacatactactactactac 1251
>emb|BX571802.15| Zebrafish DNA sequence from clone CH211-197A16 in linkage group 10, complete sequence Length = 196999 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 acatactactactactacaa 208 |||||||||||||||||||| Sbjct: 143672 acatactactactactacaa 143653
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 cggtgatcggcttcttcgcg 172 |||||||||||||||||||| Sbjct: 2180810 cggtgatcggcttcttcgcg 2180829
>gb|AC083928.11| Homo sapiens chromosome 8, clone RP11-77C4, complete sequence Length = 144023 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 gcgccgggtgctgcgggcctgggc 330 |||||||||||||||||| ||||| Sbjct: 83612 gcgccgggtgctgcgggcttgggc 83589
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cgggcctgggcgacctgccg 339 |||||||||||||||||||| Sbjct: 729440 cgggcctgggcgacctgccg 729459
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 gatctgccgcctcgcgcggc 403 |||||||||||||||||||| Sbjct: 1613188 gatctgccgcctcgcgcggc 1613169
>emb|AJ429233.1|SRE429233 Stevia rebaudiana mRNA for 1-deoxy-D-xylulose 5-phosphate reductoisomerase (dxr gene) Length = 1422 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 cggcggcggaggctgcgccg 312 |||||||||||||||||||| Sbjct: 168 cggcggcggaggctgcgccg 149
>emb|Z26595.1|CHZMCPT Z.mays zmcpt mRNA triose phosphate/phosphate translocator Length = 1588 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 ggcggcccggcggcggaggc 305 |||||||||||||||||||| Sbjct: 107 ggcggcccggcggcggaggc 88
>dbj|AK138366.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230080D24 product:glutamate receptor ionotropic, NMDA3A, full insert sequence Length = 3759 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gcgggcctgggcgacctgcc 338 |||||||||||||||||||| Sbjct: 1155 gcgggcctgggcgacctgcc 1174
>dbj|AK162603.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630050L15 product:glutamate receptor ionotropic, NMDA3A, full insert sequence Length = 4814 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gcgggcctgggcgacctgcc 338 |||||||||||||||||||| Sbjct: 1076 gcgggcctgggcgacctgcc 1095
>gb|AF336848.1|AF336848 Pseudomonas pseudoalcaligenes HBQ06 PHA synthase 1 (phaC1) gene, complete cds; PHA depolymerase (phaZ) gene, partial cds; and unknown gene Length = 2939 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 291 cccggcggcggaggctgcgccggg 314 |||||| ||||||||||||||||| Sbjct: 2075 cccggccgcggaggctgcgccggg 2098
>dbj|AK044171.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830097C19 product:similar to IONOTROPIC GLUTAMATE RECEPTOR NMDA subunit NR3A[Rattus norvegicus], full insert sequence Length = 3801 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gcgggcctgggcgacctgcc 338 |||||||||||||||||||| Sbjct: 1131 gcgggcctgggcgacctgcc 1150
>emb|CR354133.1| Gallus gallus finished cDNA, clone ChEST385h9 Length = 1069 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 295 gcggcggaggctgcgccgggtgct 318 ||||||| |||||||||||||||| Sbjct: 376 gcggcgggggctgcgccgggtgct 353
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 atactactactactacaaag 210 |||||||||||||||||||| Sbjct: 18445999 atactactactactacaaag 18446018
>ref|NM_204353.1| Gallus gallus insulin-like growth factor binding protein 4 (IGFBP4), mRNA Length = 1809 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 295 gcggcggaggctgcgccgggtgct 318 ||||||| |||||||||||||||| Sbjct: 1149 gcggcgggggctgcgccgggtgct 1126
>dbj|AK173314.1| Mus musculus mRNA for mKIAA1973 protein Length = 5551 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gcgggcctgggcgacctgcc 338 |||||||||||||||||||| Sbjct: 155 gcgggcctgggcgacctgcc 174
>gb|AY230206.1| Gallus gallus insulin-like growth factor-binding protein-4 mRNA, complete cds Length = 1809 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 295 gcggcggaggctgcgccgggtgct 318 ||||||| |||||||||||||||| Sbjct: 1149 gcggcgggggctgcgccgggtgct 1126
>dbj|AB192413.1| Gallus gallus IGFBP4 gene for insulin-like growth factor binding protein-4, complete cds Length = 5927 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 295 gcggcggaggctgcgccgggtgct 318 ||||||| |||||||||||||||| Sbjct: 5267 gcggcgggggctgcgccgggtgct 5244
>emb|BX664611.6| Mouse DNA sequence from clone RP24-201C13 on chromosome X, complete sequence Length = 59966 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 ccatctacatactactactactac 206 |||||||||||||||| ||||||| Sbjct: 49980 ccatctacatactactgctactac 49957
>emb|AL935290.10| Zebrafish DNA sequence from clone CH211-270H11, complete sequence Length = 129665 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 acatactactactactacaa 208 |||||||||||||||||||| Sbjct: 65408 acatactactactactacaa 65427
>dbj|AP005502.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0473F05 Length = 140575 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 atactactactactacaaag 210 |||||||||||||||||||| Sbjct: 132168 atactactactactacaaag 132187
>dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0671F11 Length = 159409 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 atactactactactacaaag 210 |||||||||||||||||||| Sbjct: 28022 atactactactactacaaag 28041
>gb|J00016.1|BOVPOMC3 Bovine proopiomelanocortin (POMC) gene, exon 1, 5' UT mRNA Length = 354 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 aggaagcggggagccatgggggcg 258 ||||||||||||||| |||||||| Sbjct: 89 aggaagcggggagccgtgggggcg 66
>emb|AL807392.7| Mouse DNA sequence from clone RP23-104D24 on chromosome 4, complete sequence Length = 132773 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gcgggcctgggcgacctgcc 338 |||||||||||||||||||| Sbjct: 92552 gcgggcctgggcgacctgcc 92533 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,276,415 Number of Sequences: 3902068 Number of extensions: 3276415 Number of successful extensions: 120214 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 118991 Number of HSP's gapped (non-prelim): 1213 length of query: 421 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 399 effective length of database: 17,147,199,772 effective search space: 6841732709028 effective search space used: 6841732709028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
