>TAF9B_MOUSE (Q6NZA9) Transcription initiation factor TFIID subunit 9B|
           (Transcription initiation factor TFIID subunit 9-like
           protein) (Transcription-associated factor TAFII31L)
          Length = 249

 Score =  117 bits (294), Expect = 9e-27
 Identities = 57/114 (50%), Positives = 81/114 (71%)
 Frame = +3

Query: 75  VPDEPRDARVVRELLRSMGLGEGEYEPRVVGQFLDLAYRYVGDVLGDAQVYADHADKPQI 254
           + + PRDA V+ ++L+ MG+ E  YEPRV+ Q L+ A+RYV  +L DA++Y+ HA KP +
Sbjct: 9   IKNAPRDALVMAQILKDMGITE--YEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTV 66

Query: 255 DADDVRLAIQANVNFSFSQPPPREVLLELARSRNKIPLPKSIAPPGSIPLPPEQ 416
           DADDVRLAIQ   + SF+ PPPR+ LL++AR +N+ PLP  I P     LPP++
Sbjct: 67  DADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLP-LIKPYAGPRLPPDR 119

>TAF9B_HUMAN (Q9HBM6) Transcription initiation factor TFIID subunit 9B|
           (Transcription initiation factor TFIID subunit 9-like
           protein) (Transcription-associated factor TAFII31L)
           (Neuronal cell death-related protein 7) (DN-7)
          Length = 251

 Score =  117 bits (293), Expect = 1e-26
 Identities = 57/110 (51%), Positives = 79/110 (71%)
 Frame = +3

Query: 87  PRDARVVRELLRSMGLGEGEYEPRVVGQFLDLAYRYVGDVLGDAQVYADHADKPQIDADD 266
           PRDA V+ ++L+ MG+ E  YEPRV+ Q L+ A+RYV  +L DA++Y+ HA KP +DADD
Sbjct: 13  PRDALVMAQILKDMGITE--YEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADD 70

Query: 267 VRLAIQANVNFSFSQPPPREVLLELARSRNKIPLPKSIAPPGSIPLPPEQ 416
           VRLAIQ   + SF+ PPPR+ LL++AR +N+ PLP  I P     LPP++
Sbjct: 71  VRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLP-LIKPYAGPRLPPDR 119

>TAF9_RAT (Q5BKE0) Transcription initiation factor TFIID subunit 9|
           (Transcription initiation factor TFIID 31 kDa subunit)
           (TAFII-31) (TAFII-32) (TAFII32)
          Length = 264

 Score =  117 bits (292), Expect = 1e-26
 Identities = 56/110 (50%), Positives = 80/110 (72%)
 Frame = +3

Query: 87  PRDARVVRELLRSMGLGEGEYEPRVVGQFLDLAYRYVGDVLGDAQVYADHADKPQIDADD 266
           P+DA+++ ++L+ MG+ E  YEPRV+ Q L+ A+RYV  +L DA++Y+ HA KP +DADD
Sbjct: 13  PKDAQMMAQILKDMGITE--YEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADD 70

Query: 267 VRLAIQANVNFSFSQPPPREVLLELARSRNKIPLPKSIAPPGSIPLPPEQ 416
           VRLAIQ   + SF+ PPPR+ LL++AR RN+ PLP  I P     LPP++
Sbjct: 71  VRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLP-LIKPYSGPRLPPDR 119

>TAF9B_RAT (Q62880) Transcription initiation factor TFIID subunit 9B|
           (Transcription initiation factor TFIID subunit 9-like
           protein) (Transcription-associated factor TAFII31L)
           (Neuronal cell death-related gene in neuron 7) (DN-7)
          Length = 258

 Score =  115 bits (289), Expect = 3e-26
 Identities = 56/110 (50%), Positives = 79/110 (71%)
 Frame = +3

Query: 87  PRDARVVRELLRSMGLGEGEYEPRVVGQFLDLAYRYVGDVLGDAQVYADHADKPQIDADD 266
           PRDA V+ ++L+ MG+ +  YEPRV+ Q L+ A+RYV  +L DA++Y+ HA KP +DADD
Sbjct: 13  PRDALVMAQILKDMGITD--YEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADD 70

Query: 267 VRLAIQANVNFSFSQPPPREVLLELARSRNKIPLPKSIAPPGSIPLPPEQ 416
           VRLAIQ   + SF+ PPPR+ LL++AR +N+ PLP  I P     LPP++
Sbjct: 71  VRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLP-LIKPYAGPRLPPDR 119

>TAF9_MOUSE (Q8VI33) Transcription initiation factor TFIID subunit 9|
           (Transcription initiation factor TFIID 31 kDa subunit)
           (TAFII-31) (TAFII-32) (TAFII32)
          Length = 264

 Score =  114 bits (284), Expect = 1e-25
 Identities = 55/110 (50%), Positives = 79/110 (71%)
 Frame = +3

Query: 87  PRDARVVRELLRSMGLGEGEYEPRVVGQFLDLAYRYVGDVLGDAQVYADHADKPQIDADD 266
           P+DA+++ ++L+ MG+ E  YEPRV+ Q L+ A+RYV  +L DA++Y+ HA K  +DADD
Sbjct: 13  PKDAQMMAQILKDMGITE--YEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADD 70

Query: 267 VRLAIQANVNFSFSQPPPREVLLELARSRNKIPLPKSIAPPGSIPLPPEQ 416
           VRLAIQ   + SF+ PPPR+ LL++AR RN+ PLP  I P     LPP++
Sbjct: 71  VRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLP-LIKPYSGPRLPPDR 119

>TAF9_HUMAN (Q16594) Transcription initiation factor TFIID subunit 9|
           (Transcription initiation factor TFIID 31 kDa subunit)
           (TAFII-31) (TAFII-32) (TAFII32) (STAF31/32)
          Length = 264

 Score =  114 bits (284), Expect = 1e-25
 Identities = 55/110 (50%), Positives = 79/110 (71%)
 Frame = +3

Query: 87  PRDARVVRELLRSMGLGEGEYEPRVVGQFLDLAYRYVGDVLGDAQVYADHADKPQIDADD 266
           P+DA+++ ++L+ MG+ E  YEPRV+ Q L+ A+RYV  +L DA++Y+ HA K  +DADD
Sbjct: 13  PKDAQMMAQILKDMGITE--YEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADD 70

Query: 267 VRLAIQANVNFSFSQPPPREVLLELARSRNKIPLPKSIAPPGSIPLPPEQ 416
           VRLAIQ   + SF+ PPPR+ LL++AR RN+ PLP  I P     LPP++
Sbjct: 71  VRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLP-LIKPYSGPRLPPDR 119

>TAF9_DROME (Q27272) Transcription initiation factor TFIID subunit 9|
           (Transcription initiation factor TFIID 42 kDa subunit)
           (TAFII-42) (TAFII40) (p42) (Protein enhancer of yellow
           1)
          Length = 278

 Score = 95.9 bits (237), Expect = 4e-20
 Identities = 51/110 (46%), Positives = 73/110 (66%)
 Frame = +3

Query: 87  PRDARVVRELLRSMGLGEGEYEPRVVGQFLDLAYRYVGDVLGDAQVYADHADKPQIDADD 266
           P+DA+V+  +L+ + + E  YEPRVV Q L+  +RYV  +L DA+VYA+HA K  ID DD
Sbjct: 19  PKDAQVIMSILKELNVQE--YEPRVVNQLLEFTFRYVTCILDDAKVYANHARKKTIDLDD 76

Query: 267 VRLAIQANVNFSFSQPPPREVLLELARSRNKIPLPKSIAPPGSIPLPPEQ 416
           VRLA +  ++ SF+ P  R VL ++A  RN +PLP  I P   + LPP++
Sbjct: 77  VRLATEVTLDKSFTGPLERHVLAKVADVRNSMPLP-PIKPHCGLRLPPDR 125

>TAF9_SCHPO (Q09869) Transcription initiation factor TFIID subunit 9|
           (TBP-associated factor 9)
          Length = 163

 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 48/112 (42%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
 Frame = +3

Query: 87  PRDARVVRELLRSMGLGEGEYEPRVVGQFLDLAYRYVGDVLGDAQVYADHA--DKPQIDA 260
           P+D R++  +L S+G+    Y   V  Q L  A+RY   ++ D+QVYA+H+      I  
Sbjct: 14  PKDVRLIHLILSSLGVPS--YSQTVPLQLLTFAHRYTQQLIQDSQVYAEHSRGQNAPISV 71

Query: 261 DDVRLAIQANVNFSFSQPPPREVLLELARSRNKIPLPKSIAPPGSIPLPPEQ 416
           +DVRLA+ + +N SF+ PPP+E LLELA  RN+ PLP+ I P     LPPE+
Sbjct: 72  EDVRLAVASQINHSFTGPPPKEFLLELAMERNRKPLPQ-IQPSYGFRLPPEK 122

>TAF9_YEAST (Q05027) Transcription initiation factor TFIID subunit 9|
           (TBP-associated factor 9) (TBP-associated factor 17 kDa)
           (TAFII-17) (TAFII20)
          Length = 157

 Score = 74.7 bits (182), Expect = 8e-14
 Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
 Frame = +3

Query: 81  DEPRDARVVRELLRSMGLGEGEYEPRVVGQFLDLAYRYVGDVLGDAQVYADHADKPQ--- 251
           + PRD R++  LL S  + +  YE +V  Q +D A+RY   VL DA VY D+A       
Sbjct: 28  ETPRDVRLLHLLLASQSIHQ--YEDQVPLQLMDFAHRYTQGVLKDALVYNDYAGSGNSAG 85

Query: 252 --IDADDVRLAIQANVNFSFSQPPPREVLLELARSRNKIPLPKSIAPPGSIPLPPEQ 416
             +  +D+RLAI A   + F    P+E++L+LA  RNK  LP+ +   G + LPPE+
Sbjct: 86  SGLGVEDIRLAIAARTQYQFKPTAPKELMLQLAAERNKKALPQVMGTWG-VRLPPEK 141

>YO086_YEAST (Q3E835) Uncharacterized protein YOL086W-A|
          Length = 90

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +3

Query: 99  RVVRELLRSMGLGEGEYEPRVVGQFLDLAYRYVGDVLGDAQVYADHADKPQIDADDVRLA 278
           RV   L + +   + +Y PR +   L+LAY  +G++  D Q +A HA +  ++  D+ L 
Sbjct: 17  RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLY 76

Query: 279 IQ 284
           ++
Sbjct: 77  LR 78

>TAF12_YEAST (Q03761) Transcription initiation factor TFIID subunit 12|
           (TBP-associated factor 12) (TBP-associated factor 61
           kDa) (TAFII-61) (TAFII61) (TAFII-68) (TAFII68)
          Length = 539

 Score = 36.6 bits (83), Expect = 0.025
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
 Frame = +3

Query: 99  RVVRELLRSMGLGEGEYEPRVVGQ----FLDLAYRYVGDVLGDAQVYADHADKPQIDADD 266
           R +REL++++G+ EG+ E  + G      LDLA  +V +V   +   A H     ++A D
Sbjct: 418 RKLRELVKTVGIDEGDGETVIDGDVEELLLDLADDFVTNVTAFSCRLAKHRKSDNLEARD 477

Query: 267 VRLAIQANVN 296
           ++L ++ N N
Sbjct: 478 IQLHLERNWN 487

>HMGYA_SOYBN (Q00423) HMG-Y-related protein A (SB16A protein)|
          Length = 176

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +3

Query: 207 LGDAQVYADHADKPQIDADDVRLAIQANVNFSFSQP--PPREVLLELARSRNKIPLPKSI 380
           L DA V   H +K +   D   L+ + N N+  + P  PP+       R R + P PK+ 
Sbjct: 48  LPDATVLGSHLNKMK---DSGELSFKQN-NYMKADPNAPPK-------RGRGRPPKPKTP 96

Query: 381 APPGSIPLPP 410
            PPG++  PP
Sbjct: 97  LPPGTVVSPP 106

>VL2_BPV3 (Q705F9) Minor capsid protein L2|
          Length = 518

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
 Frame = +3

Query: 177 DLAYRYVGDVLGDAQVYADHADKPQIDADDV---------RLAIQANVNFSFSQPPPREV 329
           D+  R +G+V GD+ +    A+   +D+ DV            ++ + N  FS+   R  
Sbjct: 372 DIEMRTLGEVSGDSVIMQPLAESTFVDSGDVLNEGNIEFPDSTLEDDYNEDFSR--ARLE 429

Query: 330 LLELARSRNKIPLPKSIAPPGSIPL 404
           +   ARSR  I   +   PPGS+ L
Sbjct: 430 ITTSARSRTSIVTVQEGIPPGSVKL 454

>TOP1_ZYMMO (Q9X3X7) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 1217

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
 Frame = +3

Query: 135 GEGEYEPRVVGQ------FLDLAYRYVGDVLGDAQVYADHADKPQIDADDVRLAIQANVN 296
           G G+   RV GQ      FL L      D   D       A  P + A D  L  +   +
Sbjct: 394 GTGQNVLRVTGQVVLFSGFLTLYEESADDNANDRDGKEGRARLPLLRAGDAPLKKEVRAD 453

Query: 297 FSFSQPPPR 323
             F+QPPPR
Sbjct: 454 QHFTQPPPR 462

>E2F4_HUMAN (Q16254) Transcription factor E2F4 (E2F-4)|
          Length = 413

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
 Frame = +3

Query: 201 DVLGDAQVYADHADKPQIDADDVRLAIQANVNFSFSQPPPR--------EVLLELARSRN 356
           DV      Y  H D  +  A D  LAI+A    S   P P         ++ L+      
Sbjct: 131 DVQNSCLAYVTHEDICRCFAGDTLLAIRAPSGTSLEVPIPEGLNGQKKYQIHLKSVSGPI 190

Query: 357 KIPLPKSIA---PPGSIPLPPEQDTL 425
           ++ L    A   PP ++P+PP +D L
Sbjct: 191 EVLLVNKEAWSSPPVAVPVPPPEDLL 216

>PALA_ASPOR (Q5KU05) pH-response regulator protein palA/RIM20|
          Length = 828

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
 Frame = +3

Query: 108 RELLRSMGLGEGEYEP--RVVGQFLDLAYRYVGDVLGDAQVYADHADKPQIDADDVRLAI 281
           +E++ ++ +G   Y    ++VG+F D    +V         +    +  QI+ D   +A 
Sbjct: 682 KEIISNIEVGRKFYNDLAKIVGRFRDDCKAFV---------HQRRMEASQIEGDITSVAA 732

Query: 282 QANVNFSFSQPPPREVLLELARSRNKIPLPKSIAPPGSIPLPPE 413
            A++N S  QP  R+   +  +    +   + + PP  +P  P+
Sbjct: 733 MASLNLS--QPHLRQYSQQPTQPAQPVQPAQPVQPPNQLPPQPQ 774

>YB35_SCHPO (O14340) Oxysterol-binding protein homolog C2F12.05c|
          Length = 1310

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 234  HADKPQIDADDVRLAIQANVNFSFSQPPPREVLLELARSRNKIPL 368
            HA KP +D   ++LA Q  V+F   + P RE  L++   R KI L
Sbjct: 895  HASKPSLDEKTMQLAKQIAVSFHGYEAPTRE-NLDVNDDRPKISL 938

>DYR_PNECA (P16184) Dihydrofolate reductase (EC 1.5.1.3)|
          Length = 206

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
 Frame = +3

Query: 123 SMGLGEGEYEPRVVGQFLDLAYRYVGD----------VLGDAQVYADHADKPQID 257
           S+ LG G +  + +   L+L YR  G           V+G AQ+Y    D P++D
Sbjct: 85  SLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLD 139

>FDHD_METJA (Q57743) Protein fdhD homolog|
          Length = 227

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 249 QIDADDVRLAIQANVNFSFSQPPPREVLLELARSRN 356
           +I +D V+ AI + +N   S+ PP +  +ELA   N
Sbjct: 169 RIPSDIVKKAINSGLNIIISKSPPTDKAIELAEENN 204

>GSPT1_MOUSE (Q8R050) G1 to S phase transition protein 1 homolog|
          Length = 499

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 315 PPREVLLELARSRNKIPLPKS-IAPPGS 395
           PP E   E+     +IP PKS +APPG+
Sbjct: 42  PPEESTQEMMEEEEEIPKPKSAVAPPGA 69

>HAS1_GIBZE (Q4IEK8) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)|
          Length = 590

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 225 YADHADKPQIDADDVRLAIQANVNFSFSQPPPREVLLELARSRNK 359
           YA H+ +   D + + LA  A  +F F+QPP  ++ L  + SR+K
Sbjct: 526 YASHSLRSVFDINKLDLAKVAK-SFGFTQPPRVDITLGASMSRDK 569

>RS3_ACHLA (P29223) 30S ribosomal protein S3|
          Length = 265

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +3

Query: 213 DAQVYADHADKPQIDADDVRLAIQANVNFSFSQPPPREVLLELARSRNKIPLPKSIAPPG 392
           +++ YAD  D P +  +D  +    N NFS +     E+    A+S+ ++ +   ++ PG
Sbjct: 19  ESKRYADQKDVPALIKEDALIREFLNENFSKAGVSQIEIERVKAKSKERVTIKLYVSKPG 78

>ATG1_COLLN (P87248) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)|
           (Autophagy-related protein 1) (Colletotrichum
           lindemuthianum kinase 1)
          Length = 675

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 246 PQIDADDVRLAIQANVNFSFSQPPPREVLLELARSRNKIPLPKSIAP 386
           PQ+ + D     QANV+    Q P RE+   L   R  +P P + AP
Sbjct: 377 PQLPSPDEVRVPQANVSARTGQSPGREIGEGLGIRRPPMPQPSTSAP 423

>GSPT1_HUMAN (P15170) G1 to S phase transition protein 1 homolog (GTP-binding|
           protein GST1-HS)
          Length = 499

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 315 PPREVLLELARSRNKIPLPKS-IAPPGS 395
           PP E   E+     +IP PKS +APPG+
Sbjct: 42  PPEESAHEMMEEEEEIPKPKSVVAPPGA 69

>GLGA_VIBF1 (Q5DZC1) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial|
           glycogen] synthase)
          Length = 487

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
 Frame = +3

Query: 144 EYEPRVVGQFLDLAY------RYVGDVLGDAQVYADHADKPQIDADDVRLAIQANVNFSF 305
           E+EP  + Q   +AY      R VG +      Y D               I+    FSF
Sbjct: 385 EFEPCGLNQIYSMAYGTLPIVREVGGLKDSVNNYDDD--------------IENATGFSF 430

Query: 306 SQPPPREVLLELARS 350
             P P E+LL L RS
Sbjct: 431 KNPEPMELLLVLMRS 445

>SYFB_HAHCH (Q2SDJ7) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 790

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 13/77 (16%)
 Frame = +3

Query: 234 HADKPQIDADDVRLAIQ----ANVNFSFSQPPPR-------EVLLELAR--SRNKIPLPK 374
           H D+ +++    RL +     A   ++FS P  R       +++ E+AR    NK+P+ +
Sbjct: 419 HLDRTRVEEMLARLGLGVHKVAKDGWTFSAPTHRFDISIEVDLIEEVARLYGYNKLPVTE 478

Query: 375 SIAPPGSIPLPPEQDTL 425
            +AP G  PLP  + +L
Sbjct: 479 PMAPLGIKPLPESKVSL 495

>SYL_THEMA (Q9WY15) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
            (LeuRS)
          Length = 824

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
 Frame = +3

Query: 75   VPDEPRDARVVRELLRSMGLGEGEYEPRVVGQFL-DLAYRYVGDVLGDAQVYADHADKPQ 251
            VP E  + +++RE++  + L    + P +  +F  DL      D L   Q +  + D   
Sbjct: 705  VPQEEWNRKLLREIVEKLTLALSPFAPHLAEEFWHDLG----NDSLVVQQSWPSY-DPKA 759

Query: 252  IDADDVRLAIQAN--------VNFSFSQPPPREVLLELARSRNKI---PLPKSIAPPGSI 398
            ++ ++V +AIQ N        V    S+   + ++LE  R +  +   P+ K I   G I
Sbjct: 760  LEVEEVEIAIQINGKVRDKVVVPVDISEEDLKRIVLERERVKEYVDGKPIRKFIYVKGRI 819

>POLS_RUBVR (P19725) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +3

Query: 312 PPPREVLLELARSRNKIPLPKSIAPPGSIPLPPEQDT 422
           PPP E   E   SR++ P PK    P   P PP   T
Sbjct: 78  PPPPE---ERQESRSQTPAPKPSRAPPQQPQPPRMQT 111

>POLS_RUBVH (P21480) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +3

Query: 312 PPPREVLLELARSRNKIPLPKSIAPPGSIPLPPEQDT 422
           PPP E   E   SR++ P PK    P   P PP   T
Sbjct: 78  PPPPE---ERQESRSQTPAPKPSRAPPQQPQPPRMQT 111

>POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 992

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +3

Query: 312 PPPREVLLELARSRNKIPLPKSIAPPGSIPLPPEQDT 422
           PPP E   E   SR++ P PK    P   P PP   T
Sbjct: 77  PPPPE---ERQESRSQTPAPKPSRAPPQQPQPPRMQT 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,680,150
Number of Sequences: 219361
Number of extensions: 737840
Number of successful extensions: 3122
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 2993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3104
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)