>RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous Arabidopsis|
           protein 1) (RAP-1) (Basic helix-loop-helix protein 6)
           (bHLH6) (AtbHLH006) (rd22BP1)
          Length = 623

 Score = 61.6 bits (148), Expect(2) = 2e-18
 Identities = 30/31 (96%), Positives = 31/31 (100%)
 Frame = +3

Query: 3   RFYALRAVVPNVSKMDKASLLGDAISYINEL 95
           RFYALRAVVPNVSKMDKASLLGDAI+YINEL
Sbjct: 467 RFYALRAVVPNVSKMDKASLLGDAIAYINEL 497



 Score = 48.5 bits (114), Expect(2) = 2e-18
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
 Frame = +2

Query: 95  RGKMTALESDKETLHSQIEALKKERDARPAAPSSSGMHDNGARCHAV--EIEAKILGLEA 268
           + K+   ES+K  + +Q+E +K E   R A+ S   M  + +    V  EIE KI+G +A
Sbjct: 498 KSKVVKTESEKLQIKNQLEEVKLELAGRKASASGGDMSSSCSSIKPVGMEIEVKIIGWDA 557

Query: 269 MIRVQCHKRNH 301
           MIRV+  KRNH
Sbjct: 558 MIRVESSKRNH 568

>ICE1_ARATH (Q9LSE2) Transcription factor ICE1 (Inducer of CBF expression 1)|
           (Basic helix-loop-helix protein 116) (bHLH116)
           (AtbHLH116)
          Length = 494

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = +3

Query: 3   RFYALRAVVPNVSKMDKASLLGDAISYINEL 95
           R Y LR+VVP +SKMD+AS+LGDAI Y+ EL
Sbjct: 322 RLYMLRSVVPKISKMDRASILGDAIDYLKEL 352

>TT8_ARATH (Q9FT81) TRANSPARENT TESTA 8 protein (Basic helix-loop-helix|
           protein 42) (bHLH42) (AtbHLH042)
          Length = 518

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 18/31 (58%), Positives = 25/31 (80%)
 Frame = +3

Query: 3   RFYALRAVVPNVSKMDKASLLGDAISYINEL 95
           +F  LR++VP V+KMDK S+LGD I+Y+N L
Sbjct: 378 KFITLRSMVPFVTKMDKVSILGDTIAYVNHL 408

>EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABRA3) (Basic|
           helix-loop-helix protein 2) (bHLH2) (AtbHLH002)
           (AtMyc-146)
          Length = 596

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 15/31 (48%), Positives = 24/31 (77%)
 Frame = +3

Query: 3   RFYALRAVVPNVSKMDKASLLGDAISYINEL 95
           RF  LR+++P++SK+DK S+L D I Y+ +L
Sbjct: 420 RFMTLRSIIPSISKIDKVSILDDTIEYLQDL 450

>SPT_ARATH (Q9FUA4) Protein SPATULA|
          Length = 373

 Score = 35.0 bits (79), Expect = 0.048
 Identities = 14/28 (50%), Positives = 23/28 (82%)
 Frame = +3

Query: 12  ALRAVVPNVSKMDKASLLGDAISYINEL 95
           AL++++PN +K DKAS+L +AI Y+ +L
Sbjct: 219 ALQSLIPNSNKTDKASMLDEAIEYLKQL 246

>PIF3_ARATH (O80536) Phytochrome-interacting factor 3 (Phytochrome-associated|
           protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
           (AtbHLH008)
          Length = 524

 Score = 34.7 bits (78), Expect = 0.063
 Identities = 14/28 (50%), Positives = 22/28 (78%)
 Frame = +3

Query: 12  ALRAVVPNVSKMDKASLLGDAISYINEL 95
           AL+ ++PN +K+DKAS+L +AI Y+  L
Sbjct: 365 ALQELIPNCNKVDKASMLDEAIEYLKSL 392

>LAX_ORYSA (Q7XAQ6) Transcription factor LAX PANICLE|
          Length = 215

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 3   RFYALRAVVPNVSKMDKASLLGDAISYINEL 95
           RF  LR++VP  SKMD  S+L  AI Y+  L
Sbjct: 59  RFRVLRSLVPGGSKMDTVSMLEQAIHYVKFL 89

>MYOC_MOUSE (O70624) Myocilin precursor (Trabecular meshwork-induced|
           glucocorticoid response protein)
          Length = 490

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 77  LLHQRARGKMTALESDKETLHSQIEALKKERD 172
           LLHQ   G++T  +  +E L  Q+ AL++ERD
Sbjct: 84  LLHQMTLGRVTGTQEAQEGLQGQLGALRRERD 115

>ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein|
          Length = 612

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 11/30 (36%), Positives = 24/30 (80%)
 Frame = +3

Query: 6   FYALRAVVPNVSKMDKASLLGDAISYINEL 95
           F  L++++P++ +++KAS+L + I+Y+ EL
Sbjct: 434 FLVLKSLLPSIHRVNKASILAETIAYLKEL 463

>ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein|
          Length = 610

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 11/30 (36%), Positives = 24/30 (80%)
 Frame = +3

Query: 6   FYALRAVVPNVSKMDKASLLGDAISYINEL 95
           F  L++++P++ +++KAS+L + I+Y+ EL
Sbjct: 432 FLVLKSLLPSIHRVNKASILAETIAYLKEL 461

>JPH1_HUMAN (Q9HDC5) Junctophilin-1 (Junctophilin type 1) (JP-1)|
          Length = 661

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 21/80 (26%), Positives = 39/80 (48%)
 Frame = +2

Query: 8   LRAPRRGAQRVQDGQGLTAGRRHLLHQRARGKMTALESDKETLHSQIEALKKERDARPAA 187
           L AP+     V+DG G +     L+H+ +  K +  +S  + +  + +A  K + +  A 
Sbjct: 557 LNAPQHPPVDVEDGDGSSQSSSALVHKPSANKWSPSKSVTKPVAKESKAEPKAKKSELAI 616

Query: 188 PSSSGMHDNGARCHAVEIEA 247
           P +   +D+   C A+E EA
Sbjct: 617 PKNPASNDS---CPALEKEA 633

>MYOC_RAT (Q9R1J4) Myocilin precursor (Trabecular meshwork-induced|
           glucocorticoid response protein)
          Length = 502

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 77  LLHQRARGKMTALESDKETLHSQIEALKKERD 172
           LLHQ   G +T  +  +E L  Q+ AL++ERD
Sbjct: 97  LLHQMTSGGVTGTQEVQEGLQGQLGALRRERD 128

>RP54_HELPJ (Q9ZLC8) RNA polymerase sigma-54 factor|
          Length = 414

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +2

Query: 107 TALESDKETLHSQI--EALKKERDARPAAPSSSGMHDNGARCHAVEIEAKILGLEAMIRV 280
           TA +S  ETL SQI       E   + A    SG+++ G     +E  AK+LG+E+ +  
Sbjct: 74  TASKSLFETLESQIIPPLFPTETSQKIAMDIISGLNNEGYFEENIEERAKVLGVESEVYE 133

Query: 281 QCHKR 295
           +  KR
Sbjct: 134 KVRKR 138

>RUFY1_HUMAN (Q96T51) RUN and FYVE domain-containing protein 1 (FYVE-finger|
           protein EIP1) (Zinc finger FYVE domain-containing
           protein 12)
          Length = 600

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +2

Query: 5   VLRAPRRGAQRVQDGQGLTAG---RRHLLHQRARGKMTALESDKETLHSQIEALKKE 166
           V+ + ++  +R+Q  +    G   R H L Q   G++ AL+     LH Q  +L+KE
Sbjct: 386 VMSSMKQMEERLQHSERARQGAEERSHKLQQELGGRIGALQLQLSQLHEQCSSLEKE 442

>ATHB5_ARATH (P46667) Homeobox-leucine zipper protein ATHB-5 (HD-ZIP protein|
           ATHB-5)
          Length = 312

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 83  HQRARGKMTALESDKETLHSQIEALKKERDA 175
           ++RAR K   LE D   L S  +ALK+ RD+
Sbjct: 119 NRRARWKTKQLERDYGVLKSNFDALKRNRDS 149

>ERC2_RAT (Q8K3M6) ERC protein 2 (CAZ-associated structural protein 1)|
           (CAST1) (Cast) (Cytomatrix protein p110)
          Length = 957

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +2

Query: 32  QRVQDGQGLTAGRRHLLHQRARGKMTALESDKETLHSQIEALKK--ERDARPAAPSSSGM 205
           +R+Q      A    LL +        +E+ K+TL+++ E++KK  E       PS S  
Sbjct: 264 RRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSKSLE 323

Query: 206 HDNGARCHAVEIEAKILGLEAMI 274
            DN       E E+++  LE ++
Sbjct: 324 DDNERTRRMAEAESQVSHLEVIL 346

>ERC2_MOUSE (Q6PH08) ERC protein 2 (CAZ-associated structural protein 1)|
           (CAST1)
          Length = 957

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +2

Query: 32  QRVQDGQGLTAGRRHLLHQRARGKMTALESDKETLHSQIEALKK--ERDARPAAPSSSGM 205
           +R+Q      A    LL +        +E+ K+TL+++ E++KK  E       PS S  
Sbjct: 264 RRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSKSLE 323

Query: 206 HDNGARCHAVEIEAKILGLEAMI 274
            DN       E E+++  LE ++
Sbjct: 324 DDNERTRRMAEAESQVSHLEVIL 346

>ERC2_HUMAN (O15083) ERC protein 2|
          Length = 957

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +2

Query: 32  QRVQDGQGLTAGRRHLLHQRARGKMTALESDKETLHSQIEALKK--ERDARPAAPSSSGM 205
           +R+Q      A    LL +        +E+ K+TL+++ E++KK  E       PS S  
Sbjct: 264 RRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSKSLE 323

Query: 206 HDNGARCHAVEIEAKILGLEAMI 274
            DN       E E+++  LE ++
Sbjct: 324 DDNERTRRMAEAESQVSHLEVIL 346

>TBCA_ARATH (O04350) Tubulin-specific chaperone A (Tubulin-folding cofactor A)|
           (CFA) (TCP1-chaperonin cofactor A homolog)
          Length = 113

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 164 ERDARPAAPSSSGMHDNGARCHAVEIEAKILGLEAMIRVQCHKR 295
           E++    A  ++ M D GA  + ++ +  +LG   M+   CHKR
Sbjct: 25  EKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKR 68

>PROA_RHORT (Q2RV06) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)|
           (Glutamate-5-semialdehyde dehydrogenase)
           (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA
           dehydrogenase)
          Length = 427

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
 Frame = +2

Query: 2   AVLRAPRRGAQRVQDGQGLTAGRRHLLHQRARGKMTALESDKETLHSQIEALKKERDARP 181
           A LRA   GA  +++ + ++AGR       A+G   AL    E   ++IEA+ K  +   
Sbjct: 47  AALRA-EAGAIALENAKDMSAGR-------AKGLTDALLDRLELTPARIEAMAKGLEDIA 98

Query: 182 AAPSSSG------MHDNGARCHAVEIEAKILGL 262
           A P   G         NG R   V +   ++G+
Sbjct: 99  ALPDPVGTVLAGWQRPNGLRIERVRVPIGVIGV 131

>SYP_RICPR (Q9ZDE7) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA|
           ligase) (ProRS)
          Length = 432

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 110 ALESDKETLHSQIEALKKERDARPAAPSSSGMHD 211
           A ++DKE  H  IE L  + DARP   S    HD
Sbjct: 353 AAKTDKELSHQNIEVLYDDTDARPG--SKFATHD 384

>IND_ARATH (O81313) INDEHISCENT protein|
          Length = 169

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 15  LRAVVPNVSKMDKASLLGDAISY 83
           L+ +VP  +KMD AS+L +AI Y
Sbjct: 112 LKRIVPGGAKMDTASMLDEAIRY 134

>YT31_CAEEL (Q10958) Hypothetical protein B0353.1|
          Length = 182

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 131 SPCPTPAPSSYRELVDVGD 75
           SP PT   S+YR LVD GD
Sbjct: 60  SPTPTETSSNYRSLVDSGD 78

>SET1A_HUMAN (O15047) Histone-lysine N-methyltransferase, H3 lysine-4 specific|
           SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase
           complex subunit SET1) (SET-domain-containing protein 1A)
          Length = 1707

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 143 GSGASPC-PTPAPSSYRELVDVGDG 72
           GSG  PC P PAP+++ ++   G G
Sbjct: 533 GSGHGPCTPPPAPANFEDVAPTGSG 557

>CEF1_EMENI (Q5AW35) Pre-mRNA-splicing factor cef1|
          Length = 791

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +2

Query: 68  RRHLLHQRARGKMTALESDKETLHSQIEALKKERDARPAAPSSSGMHDNGAR-CHAVEIE 244
           R +L  Q  RG++ AL   KET   ++E L  E  A PA  +     D+  R     EI 
Sbjct: 478 RENLARQSIRGRLAALPKPKET-EWELEQLPSE-SAEPAGATEYPEEDSAVRDAREKEIR 535

Query: 245 AKILGLEAMIRVQCHKRN 298
            +    E   + Q ++R+
Sbjct: 536 KRAAEAEHKRQTQVYQRS 553

>VGLM_PTPV (P03517) M polyprotein precursor [Contains: Nonstructural protein|
           NS-M; Glycoprotein G1; Glycoprotein G2]
          Length = 1313

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GQGLTAGRRHLLHQRARGKMTALESDKETLHSQIEALKKERDAR 178
           G G+  GR H  HQ+ + K   ++ +KE + S +E  + E D +
Sbjct: 135 GVGVGLGRTHHGHQQMKNKAVVID-EKERMISLLETQQSENDIK 177

>SH2P1_MOUSE (Q62018) SH2 domain-binding protein 1 (Tetratricopeptide|
            repeat-containing, SH2-binding phosphoprotein of 150 kDa)
            (TPR-containing, SH2-binding phosphoprotein of 150 kDa)
            (p150TSP)
          Length = 1173

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +2

Query: 89   RARGKMTALESDKETLHSQIE---ALKKERDARPAAPSSSGMHDN 214
            R R +  + +SD E++ S      A + E D+RPA+PS+   H++
Sbjct: 1090 RKRRRSGSEQSDNESVQSGRSPSGASENENDSRPASPSAESDHES 1134

>MYOC_CANFA (Q2PT31) Myocilin precursor|
          Length = 483

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 77  LLHQRARGKMTALESDKETLHSQIEALKKERD 172
           LLHQ   G+       +E LH ++  L+KER+
Sbjct: 77  LLHQLTLGQAAGPSESQEGLHRELGTLRKERE 108

>DFR10_MOUSE (Q64263) Defensin-related cryptdin, related sequence 10 precursor|
           (Cryptdin-related protein 4C-4) (CRS4C)
          Length = 91

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 7   STRSAPWCPTCPRWTRPHC 63
           S  S PWCP CPR     C
Sbjct: 70  SCPSCPWCPMCPRCPSCKC 88

>RP54_HELPY (P56143) RNA polymerase sigma-54 factor|
          Length = 414

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +2

Query: 107 TALESDKETLHSQI--EALKKERDARPAAPSSSGMHDNGARCHAVEIEAKILGLEAMIRV 280
           TA +S  ETL +QI       E   + A    SG+++ G     +E  A+ILG+E+ +  
Sbjct: 74  TASKSLFETLEAQIIPPLFPTETSQKIAMDIISGLNNEGYFEENIEERARILGVESEVYE 133

Query: 281 QCHKR 295
           +  KR
Sbjct: 134 KVRKR 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,345,798
Number of Sequences: 219361
Number of extensions: 376530
Number of successful extensions: 2050
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2049
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)