ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet75c11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_193472.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1578 Score = 75.8 bits (38), Expect = 7e-11 Identities = 89/106 (83%) Strand = Plus / Plus Query: 82 gctgatggacgacgtggtcgcggagatcctgctccgactcccgcccgacgagcccgggtg 141 ||||||||||||| | |||| |||||||| ||||| ||||| ||||||||||||| || Sbjct: 279 gctgatggacgacctcgtcgacgagatcctcctccgcctcccccccgacgagcccgcctg 338 Query: 142 cctcgtccgcgcctgcctcgtatccaagccctggcgcctcctcctc 187 ||||| |||||||| | ||| | ||||| |||||||| ||||||| Sbjct: 339 cctcgcccgcgcctccgccgtctgcaagcgctggcgccgcctcctc 384
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 75.8 bits (38), Expect = 7e-11 Identities = 89/106 (83%) Strand = Plus / Plus Query: 82 gctgatggacgacgtggtcgcggagatcctgctccgactcccgcccgacgagcccgggtg 141 ||||||||||||| | |||| |||||||| ||||| ||||| ||||||||||||| || Sbjct: 21064707 gctgatggacgacctcgtcgacgagatcctcctccgcctcccccccgacgagcccgcctg 21064766 Query: 142 cctcgtccgcgcctgcctcgtatccaagccctggcgcctcctcctc 187 ||||| |||||||| | ||| | ||||| |||||||| ||||||| Sbjct: 21064767 cctcgcccgcgcctccgccgtctgcaagcgctggcgccgcctcctc 21064812
>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144D11 Length = 157943 Score = 75.8 bits (38), Expect = 7e-11 Identities = 89/106 (83%) Strand = Plus / Plus Query: 82 gctgatggacgacgtggtcgcggagatcctgctccgactcccgcccgacgagcccgggtg 141 ||||||||||||| | |||| |||||||| ||||| ||||| ||||||||||||| || Sbjct: 32252 gctgatggacgacctcgtcgacgagatcctcctccgcctcccccccgacgagcccgcctg 32311 Query: 142 cctcgtccgcgcctgcctcgtatccaagccctggcgcctcctcctc 187 ||||| |||||||| | ||| | ||||| |||||||| ||||||| Sbjct: 32312 cctcgcccgcgcctccgccgtctgcaagcgctggcgccgcctcctc 32357
>dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1014_G12 Length = 158830 Score = 75.8 bits (38), Expect = 7e-11 Identities = 89/106 (83%) Strand = Plus / Plus Query: 82 gctgatggacgacgtggtcgcggagatcctgctccgactcccgcccgacgagcccgggtg 141 ||||||||||||| | |||| |||||||| ||||| ||||| ||||||||||||| || Sbjct: 127909 gctgatggacgacctcgtcgacgagatcctcctccgcctcccccccgacgagcccgcctg 127968 Query: 142 cctcgtccgcgcctgcctcgtatccaagccctggcgcctcctcctc 187 ||||| |||||||| | ||| | ||||| |||||||| ||||||| Sbjct: 127969 cctcgcccgcgcctccgccgtctgcaagcgctggcgccgcctcctc 128014
>dbj|AK107049.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-C12, full insert sequence Length = 1677 Score = 75.8 bits (38), Expect = 7e-11 Identities = 89/106 (83%) Strand = Plus / Plus Query: 82 gctgatggacgacgtggtcgcggagatcctgctccgactcccgcccgacgagcccgggtg 141 ||||||||||||| | |||| |||||||| ||||| ||||| ||||||||||||| || Sbjct: 91 gctgatggacgacctcgtcgacgagatcctcctccgcctcccccccgacgagcccgcctg 150 Query: 142 cctcgtccgcgcctgcctcgtatccaagccctggcgcctcctcctc 187 ||||| |||||||| | ||| | ||||| |||||||| ||||||| Sbjct: 151 cctcgcccgcgcctccgccgtctgcaagcgctggcgccgcctcctc 196
>ref|XM_476438.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1836 Score = 67.9 bits (34), Expect = 2e-08 Identities = 127/158 (80%) Strand = Plus / Plus Query: 99 tcgcggagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcc 158 |||| |||||||| ||||| |||| ||| |||||| | ||||||||||||||||| Sbjct: 90 tcgccgagatcctcctccgcctccggccgtccgagccggcgtgcctcgtccgcgcctcgg 149 Query: 159 tcgtatccaagccctggcgcctcctcctcacgggtaacgccttcctccggagctaccgca 218 ||| | |||||||||||||| |||||||| | | ||||||||||| |||||||| Sbjct: 150 ccgtctgcaagccctggcgccgtctcctcaccgaccaggccttcctccgccgctaccgcg 209 Query: 219 agttccacggggcaccgcccatgctgggattcctccac 256 | |||||||| || || ||| ||||||| ||||||||| Sbjct: 210 atttccacggcgcgcctcccctgctggggttcctccac 247
>gb|AC135417.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1314_A05, complete sequence Length = 109853 Score = 67.9 bits (34), Expect = 2e-08 Identities = 88/106 (83%) Strand = Plus / Plus Query: 84 tgatggacgacgtggtcgcggagatcctgctccgactcccgcccgacgagcccgggtgcc 143 ||||||||||||| |||| |||||||| || || |||||||| ||||| ||| |||| Sbjct: 6486 tgatggacgacgtcgtcgaagagatcctcctgcgcctcccgccggacgatccctcgtgcg 6545 Query: 144 tcgtccgcgcctgcctcgtatccaagccctggcgcctcctcctcac 189 ||||||||||| |||||| | ||| | |||||||| ||||||||| Sbjct: 6546 ccgtccgcgcctccctcgtctgcaaacgctggcgccgcctcctcac 6591
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 67.9 bits (34), Expect = 2e-08 Identities = 127/158 (80%) Strand = Plus / Minus Query: 99 tcgcggagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcc 158 |||| |||||||| ||||| |||| ||| |||||| | ||||||||||||||||| Sbjct: 1184579 tcgccgagatcctcctccgcctccggccgtccgagccggcgtgcctcgtccgcgcctcgg 1184520 Query: 159 tcgtatccaagccctggcgcctcctcctcacgggtaacgccttcctccggagctaccgca 218 ||| | |||||||||||||| |||||||| | | ||||||||||| |||||||| Sbjct: 1184519 ccgtctgcaagccctggcgccgtctcctcaccgaccaggccttcctccgccgctaccgcg 1184460 Query: 219 agttccacggggcaccgcccatgctgggattcctccac 256 | |||||||| || || ||| ||||||| ||||||||| Sbjct: 1184459 atttccacggcgcgcctcccctgctggggttcctccac 1184422 Score = 67.9 bits (34), Expect = 2e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 104 gagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcgta 163 |||||||| |||| ||||| ||||||||||| | | ||||||||||||| | ||||||| Sbjct: 1063713 gagatcctcgtccgcctccctcccgacgagccggagcgcctcgtccgcgcgtccctcgta 1063654 Query: 164 tccaagccctggcgcctcctcctcac 189 | |||||| ||||||| |||| |||| Sbjct: 1063653 tgcaagccttggcgccgcctcgtcac 1063628 Score = 63.9 bits (32), Expect = 3e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 104 gagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcgta 163 |||||||| ||||| ||||||| |||||||||| | |||||||||||||| |||||| Sbjct: 1083386 gagatcctcctccgcatcccgccggacgagcccgcatccctcgtccgcgcctccctcgtc 1083327 Query: 164 tccaagccctgg 175 | |||||||||| Sbjct: 1083326 tgcaagccctgg 1083315 Score = 60.0 bits (30), Expect = 4e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 120 tcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcgtatccaagccctggcgcc 179 ||||||| ||||| |||| || |||||||||||||| |||||| | ||||| |||||| | Sbjct: 1088119 tcccgccggacgatcccgcgtccctcgtccgcgcctccctcgtctgcaagcgctggcgtc 1088060 Query: 180 tcctcctcacgggtaacgccttcctccggagctaccgc 217 |||||||| | | |||||||||||| |||||||| Sbjct: 1088059 aactcctcaccgatcccgccttcctccgccgctaccgc 1088022 Score = 50.1 bits (25), Expect = 0.004 Identities = 64/77 (83%) Strand = Plus / Plus Query: 103 ggagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcgt 162 ||||||||||||||| |||||||| ||||| ||| |||| || |||||||| | ||| Sbjct: 1179327 ggagatcctgctccgcctcccgccggacgatccctcgtgctccgcccgcgcctccgccgt 1179386 Query: 163 atccaagccctggcgcc 179 | |||||||||||||| Sbjct: 1179387 ctgcaagccctggcgcc 1179403 Score = 44.1 bits (22), Expect = 0.26 Identities = 91/114 (79%) Strand = Plus / Minus Query: 104 gagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcgta 163 |||||||| ||||| ||||||| || || |||| | |||||||| ||||| |||||| Sbjct: 1093715 gagatcctcctccgcatcccgccggatgaacccgcgcacctcgtccacgcctccctcgtc 1093656 Query: 164 tccaagccctggcgcctcctcctcacgggtaacgccttcctccggagctaccgc 217 | |||||||||||| | | ||||||| | |||||||||||| |||||||| Sbjct: 1093655 tgcaagccctggcgtcgcatcctcaccgaccccgccttcctccgccgctaccgc 1093602 Score = 42.1 bits (21), Expect = 1.0 Identities = 48/57 (84%) Strand = Plus / Plus Query: 69 cgccggcgacggggctgatggacgacgtggtcgcggagatcctgctccgactcccgc 125 |||||||| ||| ||| ||||||||||| || | |||||||| ||||| ||||||| Sbjct: 1175701 cgccggcgccggagctaatggacgacgtcgtggaagagatcctcctccgtctcccgc 1175757
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 67.9 bits (34), Expect = 2e-08 Identities = 88/106 (83%) Strand = Plus / Plus Query: 84 tgatggacgacgtggtcgcggagatcctgctccgactcccgcccgacgagcccgggtgcc 143 ||||||||||||| |||| |||||||| || || |||||||| ||||| ||| |||| Sbjct: 15892797 tgatggacgacgtcgtcgaagagatcctcctgcgcctcccgccggacgatccctcgtgcg 15892856 Query: 144 tcgtccgcgcctgcctcgtatccaagccctggcgcctcctcctcac 189 ||||||||||| |||||| | ||| | |||||||| ||||||||| Sbjct: 15892857 ccgtccgcgcctccctcgtctgcaaacgctggcgccgcctcctcac 15892902
>dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0057M23 Length = 168029 Score = 67.9 bits (34), Expect = 2e-08 Identities = 127/158 (80%) Strand = Plus / Minus Query: 99 tcgcggagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcc 158 |||| |||||||| ||||| |||| ||| |||||| | ||||||||||||||||| Sbjct: 86186 tcgccgagatcctcctccgcctccggccgtccgagccggcgtgcctcgtccgcgcctcgg 86127 Query: 159 tcgtatccaagccctggcgcctcctcctcacgggtaacgccttcctccggagctaccgca 218 ||| | |||||||||||||| |||||||| | | ||||||||||| |||||||| Sbjct: 86126 ccgtctgcaagccctggcgccgtctcctcaccgaccaggccttcctccgccgctaccgcg 86067 Query: 219 agttccacggggcaccgcccatgctgggattcctccac 256 | |||||||| || || ||| ||||||| ||||||||| Sbjct: 86066 atttccacggcgcgcctcccctgctggggttcctccac 86029 Score = 50.1 bits (25), Expect = 0.004 Identities = 64/77 (83%) Strand = Plus / Plus Query: 103 ggagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcgt 162 ||||||||||||||| |||||||| ||||| ||| |||| || |||||||| | ||| Sbjct: 80934 ggagatcctgctccgcctcccgccggacgatccctcgtgctccgcccgcgcctccgccgt 80993 Query: 163 atccaagccctggcgcc 179 | |||||||||||||| Sbjct: 80994 ctgcaagccctggcgcc 81010 Score = 42.1 bits (21), Expect = 1.0 Identities = 48/57 (84%) Strand = Plus / Plus Query: 69 cgccggcgacggggctgatggacgacgtggtcgcggagatcctgctccgactcccgc 125 |||||||| ||| ||| ||||||||||| || | |||||||| ||||| ||||||| Sbjct: 77308 cgccggcgccggagctaatggacgacgtcgtggaagagatcctcctccgtctcccgc 77364
>dbj|AK070836.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023071O06, full insert sequence Length = 1835 Score = 67.9 bits (34), Expect = 2e-08 Identities = 127/158 (80%) Strand = Plus / Plus Query: 99 tcgcggagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcc 158 |||| |||||||| ||||| |||| ||| |||||| | ||||||||||||||||| Sbjct: 89 tcgccgagatcctcctccgcctccggccgtccgagccggcgtgcctcgtccgcgcctcgg 148 Query: 159 tcgtatccaagccctggcgcctcctcctcacgggtaacgccttcctccggagctaccgca 218 ||| | |||||||||||||| |||||||| | | ||||||||||| |||||||| Sbjct: 149 ccgtctgcaagccctggcgccgtctcctcaccgaccaggccttcctccgccgctaccgcg 208 Query: 219 agttccacggggcaccgcccatgctgggattcctccac 256 | |||||||| || || ||| ||||||| ||||||||| Sbjct: 209 atttccacggcgcgcctcccctgctggggttcctccac 246
>dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022B05 Length = 151317 Score = 67.9 bits (34), Expect = 2e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 104 gagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcgta 163 |||||||| |||| ||||| ||||||||||| | | ||||||||||||| | ||||||| Sbjct: 61301 gagatcctcgtccgcctccctcccgacgagccggagcgcctcgtccgcgcgtccctcgta 61242 Query: 164 tccaagccctggcgcctcctcctcac 189 | |||||| ||||||| |||| |||| Sbjct: 61241 tgcaagccttggcgccgcctcgtcac 61216 Score = 63.9 bits (32), Expect = 3e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 104 gagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcgta 163 |||||||| ||||| ||||||| |||||||||| | |||||||||||||| |||||| Sbjct: 80974 gagatcctcctccgcatcccgccggacgagcccgcatccctcgtccgcgcctccctcgtc 80915 Query: 164 tccaagccctgg 175 | |||||||||| Sbjct: 80914 tgcaagccctgg 80903 Score = 60.0 bits (30), Expect = 4e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 120 tcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcgtatccaagccctggcgcc 179 ||||||| ||||| |||| || |||||||||||||| |||||| | ||||| |||||| | Sbjct: 85707 tcccgccggacgatcccgcgtccctcgtccgcgcctccctcgtctgcaagcgctggcgtc 85648 Query: 180 tcctcctcacgggtaacgccttcctccggagctaccgc 217 |||||||| | | |||||||||||| |||||||| Sbjct: 85647 aactcctcaccgatcccgccttcctccgccgctaccgc 85610 Score = 44.1 bits (22), Expect = 0.26 Identities = 91/114 (79%) Strand = Plus / Minus Query: 104 gagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcgta 163 |||||||| ||||| ||||||| || || |||| | |||||||| ||||| |||||| Sbjct: 91303 gagatcctcctccgcatcccgccggatgaacccgcgcacctcgtccacgcctccctcgtc 91244 Query: 164 tccaagccctggcgcctcctcctcacgggtaacgccttcctccggagctaccgc 217 | |||||||||||| | | ||||||| | |||||||||||| |||||||| Sbjct: 91243 tgcaagccctggcgtcgcatcctcaccgaccccgccttcctccgccgctaccgc 91190
>ref|NM_194191.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 63.9 bits (32), Expect = 3e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 104 gagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcgta 163 |||||||| ||||| ||||||| |||||||||| | |||||||||||||| |||||| Sbjct: 40 gagatcctcctccgcatcccgccggacgagcccgcatccctcgtccgcgcctccctcgtc 99 Query: 164 tccaagccctgg 175 | |||||||||| Sbjct: 100 tgcaagccctgg 111
>ref|XM_476423.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1377 Score = 60.0 bits (30), Expect = 4e-06 Identities = 81/98 (82%) Strand = Plus / Plus Query: 120 tcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcgtatccaagccctggcgcc 179 ||||||| ||||| |||| || |||||||||||||| |||||| | ||||| |||||| | Sbjct: 92 tcccgccggacgatcccgcgtccctcgtccgcgcctccctcgtctgcaagcgctggcgtc 151 Query: 180 tcctcctcacgggtaacgccttcctccggagctaccgc 217 |||||||| | | |||||||||||| |||||||| Sbjct: 152 aactcctcaccgatcccgccttcctccgccgctaccgc 189
>dbj|AK107254.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-G06, full insert sequence Length = 1377 Score = 60.0 bits (30), Expect = 4e-06 Identities = 81/98 (82%) Strand = Plus / Plus Query: 120 tcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcgtatccaagccctggcgcc 179 ||||||| ||||| |||| || |||||||||||||| |||||| | ||||| |||||| | Sbjct: 92 tcccgccggacgatcccgcgtccctcgtccgcgcctccctcgtctgcaagcgctggcgtc 151 Query: 180 tcctcctcacgggtaacgccttcctccggagctaccgc 217 |||||||| | | |||||||||||| |||||||| Sbjct: 152 aactcctcaccgatcccgccttcctccgccgctaccgc 189
>ref|XM_474592.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1350 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Plus Query: 104 gagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcg 161 |||||||| |||| |||||||||||||| |||| |||||| ||||||||| ||||| Sbjct: 52 gagatcctcgtccgcctcccgcccgacgaccccgcctgcctcctccgcgcctccctcg 109
>emb|AL662949.4|OSJN00144 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0115I21, complete sequence Length = 127162 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Minus Query: 104 gagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcg 161 |||||||| |||| |||||||||||||| |||| |||||| ||||||||| ||||| Sbjct: 88155 gagatcctcgtccgcctcccgcccgacgaccccgcctgcctcctccgcgcctccctcg 88098
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Plus Query: 104 gagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcg 161 |||||||| |||| |||||||||||||| |||| |||||| ||||||||| ||||| Sbjct: 4529323 gagatcctcgtccgcctcccgcccgacgaccccgcctgcctcctccgcgcctccctcg 4529380
>ref|XM_476437.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2726 Score = 50.1 bits (25), Expect = 0.004 Identities = 64/77 (83%) Strand = Plus / Plus Query: 103 ggagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcgt 162 ||||||||||||||| |||||||| ||||| ||| |||| || |||||||| | ||| Sbjct: 84 ggagatcctgctccgcctcccgccggacgatccctcgtgctccgcccgcgcctccgccgt 143 Query: 163 atccaagccctggcgcc 179 | |||||||||||||| Sbjct: 144 ctgcaagccctggcgcc 160
>dbj|AK070767.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069J11, full insert sequence Length = 2727 Score = 50.1 bits (25), Expect = 0.004 Identities = 64/77 (83%) Strand = Plus / Plus Query: 103 ggagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcgt 162 ||||||||||||||| |||||||| ||||| ||| |||| || |||||||| | ||| Sbjct: 85 ggagatcctgctccgcctcccgccggacgatccctcgtgctccgcccgcgcctccgccgt 144 Query: 163 atccaagccctggcgcc 179 | |||||||||||||| Sbjct: 145 ctgcaagccctggcgcc 161
>ref|NM_194832.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0030B02.6), mRNA Length = 1197 Score = 46.1 bits (23), Expect = 0.065 Identities = 35/39 (89%) Strand = Plus / Plus Query: 88 ggacgacgtggtcgcggagatcctgctccgactcccgcc 126 ||||||||||||||| |||||||| ||| | |||||||| Sbjct: 48 ggacgacgtggtcgccgagatcctcctctgcctcccgcc 86
>gb|AC074105.3| Oryza sativa chromosome 10 clone OSJNBa0030B02, complete sequence Length = 146836 Score = 46.1 bits (23), Expect = 0.065 Identities = 35/39 (89%) Strand = Plus / Minus Query: 88 ggacgacgtggtcgcggagatcctgctccgactcccgcc 126 ||||||||||||||| |||||||| ||| | |||||||| Sbjct: 47532 ggacgacgtggtcgccgagatcctcctctgcctcccgcc 47494
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.065 Identities = 35/39 (89%) Strand = Plus / Minus Query: 88 ggacgacgtggtcgcggagatcctgctccgactcccgcc 126 ||||||||||||||| |||||||| ||| | |||||||| Sbjct: 2720756 ggacgacgtggtcgccgagatcctcctctgcctcccgcc 2720718 Score = 42.1 bits (21), Expect = 1.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 197 gccttcctccggagctaccgcaagttccacggg 229 ||||||||||| |||||||| ||||||||||| Sbjct: 3707211 gccttcctccgccgctaccgcgagttccacggg 3707243
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.065 Identities = 56/67 (83%) Strand = Plus / Minus Query: 89 gacgacgtggtcgcggagatcctgctccgactcccgcccgacgagcccgggtgcctcgtc 148 |||||| |||||| |||||||| ||||| ||||||| ||||| ||| | |||||||| Sbjct: 23575012 gacgacctggtcggcgagatcctcctccgcatcccgccggacgaccccacgcgcctcgtc 23574953 Query: 149 cgcgcct 155 ||||||| Sbjct: 23574952 cgcgcct 23574946
>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0481H08 Length = 146841 Score = 46.1 bits (23), Expect = 0.065 Identities = 56/67 (83%) Strand = Plus / Minus Query: 89 gacgacgtggtcgcggagatcctgctccgactcccgcccgacgagcccgggtgcctcgtc 148 |||||| |||||| |||||||| ||||| ||||||| ||||| ||| | |||||||| Sbjct: 55976 gacgacctggtcggcgagatcctcctccgcatcccgccggacgaccccacgcgcctcgtc 55917 Query: 149 cgcgcct 155 ||||||| Sbjct: 55916 cgcgcct 55910
>dbj|AK073677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050I02, full insert sequence Length = 1699 Score = 46.1 bits (23), Expect = 0.065 Identities = 35/39 (89%) Strand = Plus / Plus Query: 88 ggacgacgtggtcgcggagatcctgctccgactcccgcc 126 ||||||||||||||| |||||||| ||| | |||||||| Sbjct: 120 ggacgacgtggtcgccgagatcctcctctgcctcccgcc 158
>dbj|AK070503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054J12, full insert sequence Length = 1420 Score = 46.1 bits (23), Expect = 0.065 Identities = 35/39 (89%) Strand = Plus / Plus Query: 88 ggacgacgtggtcgcggagatcctgctccgactcccgcc 126 ||||||||||||||| |||||||| ||| | |||||||| Sbjct: 64 ggacgacgtggtcgccgagatcctcctctgcctcccgcc 102
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.065 Identities = 35/39 (89%) Strand = Plus / Minus Query: 88 ggacgacgtggtcgcggagatcctgctccgactcccgcc 126 ||||||||||||||| |||||||| ||| | |||||||| Sbjct: 2720707 ggacgacgtggtcgccgagatcctcctctgcctcccgcc 2720669 Score = 42.1 bits (21), Expect = 1.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 197 gccttcctccggagctaccgcaagttccacggg 229 ||||||||||| |||||||| ||||||||||| Sbjct: 3707132 gccttcctccgccgctaccgcgagttccacggg 3707164
>ref|NM_194195.1| Oryza sativa (japonica cultivar-group), mRNA Length = 945 Score = 44.1 bits (22), Expect = 0.26 Identities = 91/114 (79%) Strand = Plus / Plus Query: 104 gagatcctgctccgactcccgcccgacgagcccgggtgcctcgtccgcgcctgcctcgta 163 |||||||| ||||| ||||||| || || |||| | |||||||| ||||| |||||| Sbjct: 40 gagatcctcctccgcatcccgccggatgaacccgcgcacctcgtccacgcctccctcgtc 99 Query: 164 tccaagccctggcgcctcctcctcacgggtaacgccttcctccggagctaccgc 217 | |||||||||||| | | ||||||| | |||||||||||| |||||||| Sbjct: 100 tgcaagccctggcgtcgcatcctcaccgaccccgccttcctccgccgctaccgc 153
>ref|NM_194951.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0036D19.10), mRNA Length = 1380 Score = 42.1 bits (21), Expect = 1.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 197 gccttcctccggagctaccgcaagttccacggg 229 ||||||||||| |||||||| ||||||||||| Sbjct: 388 gccttcctccgccgctaccgcgagttccacggg 420
>ref|XM_476436.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1041 Score = 42.1 bits (21), Expect = 1.0 Identities = 48/57 (84%) Strand = Plus / Plus Query: 69 cgccggcgacggggctgatggacgacgtggtcgcggagatcctgctccgactcccgc 125 |||||||| ||| ||| ||||||||||| || | |||||||| ||||| ||||||| Sbjct: 8 cgccggcgccggagctaatggacgacgtcgtggaagagatcctcctccgtctcccgc 64
>gb|AC116600.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0036D19, complete sequence Length = 126686 Score = 42.1 bits (21), Expect = 1.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 197 gccttcctccggagctaccgcaagttccacggg 229 ||||||||||| |||||||| ||||||||||| Sbjct: 55693 gccttcctccgccgctaccgcgagttccacggg 55725
>gb|AC087723.3| Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence Length = 144359 Score = 42.1 bits (21), Expect = 1.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 197 gccttcctccggagctaccgcaagttccacggg 229 ||||||||||| |||||||| ||||||||||| Sbjct: 140052 gccttcctccgccgctaccgcgagttccacggg 140084
>dbj|AK106884.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-F07, full insert sequence Length = 1577 Score = 42.1 bits (21), Expect = 1.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 197 gccttcctccggagctaccgcaagttccacggg 229 ||||||||||| |||||||| ||||||||||| Sbjct: 238 gccttcctccgccgctaccgcgagttccacggg 270
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 4.0 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 117 gactcccgcccgacga-gcccgggtgcc 143 |||||||||||||||| ||||||||||| Sbjct: 528125 gactcccgcccgacgatgcccgggtgcc 528152
>gb|AC008737.11| Homo sapiens chromosome 19 clone CTD-2538G9, complete sequence Length = 248281 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ccacggggcaccgcccatgc 242 |||||||||||||||||||| Sbjct: 188677 ccacggggcaccgcccatgc 188658
>gb|AC160942.1| Pan troglodytes BAC clone CH251-443J9 from chromosome unknown, complete sequence Length = 182340 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 ctggttctgtccccagcaaa 52 |||||||||||||||||||| Sbjct: 125606 ctggttctgtccccagcaaa 125587
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ctatgccgccggcgacgggg 82 |||||||||||||||||||| Sbjct: 2673029 ctatgccgccggcgacgggg 2673048
>gb|AC163758.3| Pan troglodytes BAC clone CH251-221N15 from chromosome 7, complete sequence Length = 157318 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ctggttctgtccccagcaaa 52 |||||||||||||||||||| Sbjct: 128289 ctggttctgtccccagcaaa 128308
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cgacgtggtcgcggagatcc 110 |||||||||||||||||||| Sbjct: 1213015 cgacgtggtcgcggagatcc 1212996
>gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete sequence Length = 105215 Score = 40.1 bits (20), Expect = 4.0 Identities = 44/52 (84%) Strand = Plus / Minus Query: 128 gacgagcccgggtgcctcgtccgcgcctgcctcgtatccaagccctggcgcc 179 |||||||||| | |||||||||||||| ||| || | ||||| |||||||| Sbjct: 84362 gacgagcccgcgcacctcgtccgcgcctccctagtctgcaagctctggcgcc 84311 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,887,450 Number of Sequences: 3902068 Number of extensions: 1887450 Number of successful extensions: 30740 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 30339 Number of HSP's gapped (non-prelim): 396 length of query: 305 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 283 effective length of database: 17,147,199,772 effective search space: 4852657535476 effective search space used: 4852657535476 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
