ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet74f12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467978.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1135 Score = 184 bits (93), Expect = 1e-43 Identities = 111/117 (94%) Strand = Plus / Plus Query: 181 tctgcgcggaggccgtgtggctcgacatgccgcagacggggaccaagtgcgtgtcggagg 240 ||||||||||||| |||||||| ||| |||||||| ||||||||||||||||||| |||| Sbjct: 156 tctgcgcggaggcggtgtggctggacttgccgcagtcggggaccaagtgcgtgtccgagg 215 Query: 241 agatccaggccaacgtggtggtgctcgccgactacgccctcatgtacgagtcccacc 297 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 216 agatccagtccaacgtggtggtgctcgccgactacgccctcatgtacgagtcccacc 272
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 184 bits (93), Expect = 1e-43 Identities = 111/117 (94%) Strand = Plus / Minus Query: 181 tctgcgcggaggccgtgtggctcgacatgccgcagacggggaccaagtgcgtgtcggagg 240 ||||||||||||| |||||||| ||| |||||||| ||||||||||||||||||| |||| Sbjct: 32374790 tctgcgcggaggcggtgtggctggacttgccgcagtcggggaccaagtgcgtgtccgagg 32374731 Query: 241 agatccaggccaacgtggtggtgctcgccgactacgccctcatgtacgagtcccacc 297 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32374730 agatccagtccaacgtggtggtgctcgccgactacgccctcatgtacgagtcccacc 32374674 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 ggccgtgctgctcgccgtcgc 175 ||||||||||||||||||||| Sbjct: 26520643 ggccgtgctgctcgccgtcgc 26520623 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Minus Query: 150 gcggcggccgtgctgctcgccgtcg 174 |||||||||||| |||||||||||| Sbjct: 10093821 gcggcggccgtggtgctcgccgtcg 10093797
>dbj|AP004125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1767_D02 Length = 139145 Score = 184 bits (93), Expect = 1e-43 Identities = 111/117 (94%) Strand = Plus / Minus Query: 181 tctgcgcggaggccgtgtggctcgacatgccgcagacggggaccaagtgcgtgtcggagg 240 ||||||||||||| |||||||| ||| |||||||| ||||||||||||||||||| |||| Sbjct: 36303 tctgcgcggaggcggtgtggctggacttgccgcagtcggggaccaagtgcgtgtccgagg 36244 Query: 241 agatccaggccaacgtggtggtgctcgccgactacgccctcatgtacgagtcccacc 297 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 36243 agatccagtccaacgtggtggtgctcgccgactacgccctcatgtacgagtcccacc 36187
>dbj|AK070007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034G24, full insert sequence Length = 1135 Score = 184 bits (93), Expect = 1e-43 Identities = 111/117 (94%) Strand = Plus / Plus Query: 181 tctgcgcggaggccgtgtggctcgacatgccgcagacggggaccaagtgcgtgtcggagg 240 ||||||||||||| |||||||| ||| |||||||| ||||||||||||||||||| |||| Sbjct: 156 tctgcgcggaggcggtgtggctggacttgccgcagtcggggaccaagtgcgtgtccgagg 215 Query: 241 agatccaggccaacgtggtggtgctcgccgactacgccctcatgtacgagtcccacc 297 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 216 agatccagtccaacgtggtggtgctcgccgactacgccctcatgtacgagtcccacc 272
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 170 bits (86), Expect = 2e-39 Identities = 104/110 (94%) Strand = Plus / Plus Query: 188 ggaggccgtgtggctcgacatgccgcagacggggaccaagtgcgtgtcggaggagatcca 247 |||||| |||||||||||| |||||| ||||||||||||||||||||| ||||||||||| Sbjct: 5630095 ggaggcggtgtggctcgacctgccgccgacggggaccaagtgcgtgtccgaggagatcca 5630154 Query: 248 ggccaacgtggtggtgctcgccgactacgccctcatgtacgagtcccacc 297 | ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 5630155 gcccaacgtggtggtgctcgcggactacgccctcatgtacgagtcccacc 5630204 Score = 42.1 bits (21), Expect = 0.99 Identities = 27/29 (93%) Strand = Plus / Plus Query: 118 cggcgatgcccgcgccggcggcgcgggcc 146 |||||| ||||||| |||||||||||||| Sbjct: 27725337 cggcgacgcccgcggcggcggcgcgggcc 27725365
>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0021C04 Length = 162115 Score = 170 bits (86), Expect = 2e-39 Identities = 104/110 (94%) Strand = Plus / Plus Query: 188 ggaggccgtgtggctcgacatgccgcagacggggaccaagtgcgtgtcggaggagatcca 247 |||||| |||||||||||| |||||| ||||||||||||||||||||| ||||||||||| Sbjct: 22242 ggaggcggtgtggctcgacctgccgccgacggggaccaagtgcgtgtccgaggagatcca 22301 Query: 248 ggccaacgtggtggtgctcgccgactacgccctcatgtacgagtcccacc 297 | ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 22302 gcccaacgtggtggtgctcgcggactacgccctcatgtacgagtcccacc 22351
>dbj|AK120435.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097P16, full insert sequence Length = 866 Score = 170 bits (86), Expect = 2e-39 Identities = 104/110 (94%) Strand = Plus / Plus Query: 188 ggaggccgtgtggctcgacatgccgcagacggggaccaagtgcgtgtcggaggagatcca 247 |||||| |||||||||||| |||||| ||||||||||||||||||||| ||||||||||| Sbjct: 130 ggaggcggtgtggctcgacctgccgccgacggggaccaagtgcgtgtccgaggagatcca 189 Query: 248 ggccaacgtggtggtgctcgccgactacgccctcatgtacgagtcccacc 297 | ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 190 gcccaacgtggtggtgctcgcggactacgccctcatgtacgagtcccacc 239
>gb|AY106022.1| Zea mays PCO144349 mRNA sequence Length = 1010 Score = 121 bits (61), Expect = 1e-24 Identities = 97/109 (88%) Strand = Plus / Plus Query: 189 gaggccgtgtggctcgacatgccgcagacggggaccaagtgcgtgtcggaggagatccag 248 ||||||||||||||||| | |||| | |||||||||||||||| || |||||||||||| Sbjct: 234 gaggccgtgtggctcgagctcccgccgtcggggaccaagtgcgtctccgaggagatccag 293 Query: 249 gccaacgtggtggtgctcgccgactacgccctcatgtacgagtcccacc 297 ||||||| || ||||||||||||||||| |||||||||||||||||| Sbjct: 294 cccaacgtcgtagtgctcgccgactacgctatcatgtacgagtcccacc 342
>gb|AY110362.1| Zea mays CL33987_1 mRNA sequence Length = 932 Score = 117 bits (59), Expect = 2e-23 Identities = 116/135 (85%) Strand = Plus / Plus Query: 163 tgctcgccgtcgcgtccatctgcgcggaggccgtgtggctcgacatgccgcagacgggga 222 |||||||||||||||| || || ||||| ||||||| ||| |||| ||| |||||| Sbjct: 52 tgctcgccgtcgcgtcactccatgctgaggcgatgtggctggacgtgccacagtcgggga 111 Query: 223 ccaagtgcgtgtcggaggagatccaggccaacgtggtggtgctcgccgactacgccctca 282 |||||||||||||||||||||||||| | ||||||||||||||| ||||||| || ||| Sbjct: 112 ccaagtgcgtgtcggaggagatccagtctaacgtggtggtgctcaccgactattccatca 171 Query: 283 tgtacgagtcccacc 297 ||| ||||||||||| Sbjct: 172 tgttcgagtcccacc 186
>gb|AY389600.1| Hyacinthus orientalis emp24 protein mRNA, partial cds Length = 743 Score = 67.9 bits (34), Expect = 2e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 186 gcggaggccgtgtggctcgacatgccgcagacggggaccaagtgcgtgtcggaggagatc 245 |||||||| |||||||| || | |||| || ||||||||||||||||| ||||||||| Sbjct: 139 gcggaggcggtgtggctggatcttccgccgagcgggaccaagtgcgtgtccgaggagatc 198 Query: 246 caggccaacgtggtggtgctcgccga 271 ||| ||||||| || || |||||||| Sbjct: 199 cagcccaacgtcgtcgtcctcgccga 224
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 60.0 bits (30), Expect = 4e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 195 gtgtggctcgacatgccgcagacggggaccaagtgcgtgtcggaggagatccaggccaac 254 |||||||| || || |||| | ||| ||||||||| |||||||||||||||||| ||||| Sbjct: 16941985 gtgtggctggagatcccgccgtcggcgaccaagtgtgtgtcggaggagatccagtccaac 16942044 Query: 255 gt 256 || Sbjct: 16942045 gt 16942046 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gccgtgctgctcgccgtcgcgtccat 181 ||||||| |||||||||||||||||| Sbjct: 18547228 gccgtgccgctcgccgtcgcgtccat 18547253
>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0488D02 Length = 154537 Score = 60.0 bits (30), Expect = 4e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 195 gtgtggctcgacatgccgcagacggggaccaagtgcgtgtcggaggagatccaggccaac 254 |||||||| || || |||| | ||| ||||||||| |||||||||||||||||| ||||| Sbjct: 71798 gtgtggctggagatcccgccgtcggcgaccaagtgtgtgtcggaggagatccagtccaac 71857 Query: 255 gt 256 || Sbjct: 71858 gt 71859
>ref|XM_483220.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2055 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gccgtgctgctcgccgtcgcgtccat 181 ||||||| |||||||||||||||||| Sbjct: 341 gccgtgccgctcgccgtcgcgtccat 366
>ref|XM_507285.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1506_F01.29 mRNA Length = 2120 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gccgtgctgctcgccgtcgcgtccat 181 ||||||| |||||||||||||||||| Sbjct: 394 gccgtgccgctcgccgtcgcgtccat 419
>ref|NM_183786.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1338 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 115 cggcggcgatgcccgcgccggcggcg 140 |||||||||||| ||||||||||||| Sbjct: 310 cggcggcgatgctcgcgccggcggcg 285
>emb|AL121750.22|HSJ323A24 Human DNA sequence from clone RP3-323A24 on chromosome 4, complete sequence Length = 149969 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 134 ggcggcgcgggccctcgcggcg 155 |||||||||||||||||||||| Sbjct: 132753 ggcggcgcgggccctcgcggcg 132732
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gccgtgctgctcgccgtcgcgtccat 181 ||||||| |||||||||||||||||| Sbjct: 24876404 gccgtgccgctcgccgtcgcgtccat 24876429
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 115 cggcggcgatgcccgcgccggcggcg 140 |||||||||||| ||||||||||||| Sbjct: 12281178 cggcggcgatgctcgcgccggcggcg 12281203
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 115 cggcggcgatgcccgcgccggcggcg 140 ||||||||||||||||||||| |||| Sbjct: 739734 cggcggcgatgcccgcgccggtggcg 739759
>dbj|AP002953.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0426D06 Length = 162173 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 115 cggcggcgatgcccgcgccggcggcg 140 |||||||||||| ||||||||||||| Sbjct: 105804 cggcggcgatgctcgcgccggcggcg 105829
>dbj|AP004190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1506_F01 Length = 121202 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gccgtgctgctcgccgtcgcgtccat 181 ||||||| |||||||||||||||||| Sbjct: 80850 gccgtgccgctcgccgtcgcgtccat 80875
>dbj|AK119300.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E12, full insert sequence Length = 2693 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 156 gccgtgctgctcgccgtcgcgtccat 181 ||||||| |||||||||||||||||| Sbjct: 1974 gccgtgccgctcgccgtcgcgtccat 1949
>dbj|AK105756.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D02, full insert sequence Length = 1959 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gccgtgctgctcgccgtcgcgtccat 181 ||||||| |||||||||||||||||| Sbjct: 363 gccgtgccgctcgccgtcgcgtccat 388
>dbj|AK098863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P05, full insert sequence Length = 2058 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gccgtgctgctcgccgtcgcgtccat 181 ||||||| |||||||||||||||||| Sbjct: 344 gccgtgccgctcgccgtcgcgtccat 369
>dbj|AK072183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151H08, full insert sequence Length = 2120 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gccgtgctgctcgccgtcgcgtccat 181 ||||||| |||||||||||||||||| Sbjct: 394 gccgtgccgctcgccgtcgcgtccat 419
>dbj|AK067836.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123J03, full insert sequence Length = 1969 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gccgtgctgctcgccgtcgcgtccat 181 ||||||| |||||||||||||||||| Sbjct: 361 gccgtgccgctcgccgtcgcgtccat 386
>emb|Z68162.1|HSL145E5 Human DNA sequence from clone LA04NC01-145E5 on chromosome 4, complete sequence Length = 25719 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 134 ggcggcgcgggccctcgcggcg 155 |||||||||||||||||||||| Sbjct: 11390 ggcggcgcgggccctcgcggcg 11369
>ref|XM_467119.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1099 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 ggccgtgctgctcgccgtcgc 175 ||||||||||||||||||||| Sbjct: 135 ggccgtgctgctcgccgtcgc 155
>ref|XM_506893.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1003_B06.37 mRNA Length = 1256 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 ggccgtgctgctcgccgtcgc 175 ||||||||||||||||||||| Sbjct: 289 ggccgtgctgctcgccgtcgc 309
>ref|XM_464933.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2057 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Plus Query: 150 gcggcggccgtgctgctcgccgtcg 174 |||||||||||| |||||||||||| Sbjct: 248 gcggcggccgtggtgctcgccgtcg 272
>gb|AC005178.1| Homo sapiens chromosome 5, P1 clone 328E3 (LBNL H53), complete sequence Length = 84969 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 gcgtgtcggaggagatccagg 249 ||||||||||||||||||||| Sbjct: 72874 gcgtgtcggaggagatccagg 72894
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 ctcgcggcggccgtgctgctcgccg 171 ||||||||||||| ||||||||||| Sbjct: 2575020 ctcgcggcggccgcgctgctcgccg 2575044
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 cctcgcggcggccgtgctgct 166 ||||||||||||||||||||| Sbjct: 334019 cctcgcggcggccgtgctgct 334039
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 ctcgcggcggccgtgctgctcgccg 171 ||||||||||||| ||||||||||| Sbjct: 755062 ctcgcggcggccgcgctgctcgccg 755086
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 ggcggcgatgcccgcgccggc 136 ||||||||||||||||||||| Sbjct: 94463 ggcggcgatgcccgcgccggc 94483
>gb|AC023061.4| Homo sapiens chromosome 5 clone RP1-59F3, complete sequence Length = 88200 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 229 gcgtgtcggaggagatccagg 249 ||||||||||||||||||||| Sbjct: 59272 gcgtgtcggaggagatccagg 59252
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 ctcgcggcggccgtgctgctcgccg 171 ||||||||||||| ||||||||||| Sbjct: 485989 ctcgcggcggccgcgctgctcgccg 486013
>dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_B06 Length = 131956 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 ggccgtgctgctcgccgtcgc 175 ||||||||||||||||||||| Sbjct: 120559 ggccgtgctgctcgccgtcgc 120539
>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519E06 Length = 170634 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 ggccgtgctgctcgccgtcgc 175 ||||||||||||||||||||| Sbjct: 63024 ggccgtgctgctcgccgtcgc 63004
>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1153E06 Length = 174588 Score = 42.1 bits (21), Expect = 0.99 Identities = 27/29 (93%) Strand = Plus / Plus Query: 118 cggcgatgcccgcgccggcggcgcgggcc 146 |||||| ||||||| |||||||||||||| Sbjct: 74592 cggcgacgcccgcggcggcggcgcgggcc 74620
>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0710B08 Length = 186991 Score = 42.1 bits (21), Expect = 0.99 Identities = 27/29 (93%) Strand = Plus / Plus Query: 118 cggcgatgcccgcgccggcggcgcgggcc 146 |||||| ||||||| |||||||||||||| Sbjct: 27846 cggcgacgcccgcggcggcggcgcgggcc 27874
>dbj|AP004771.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0413A11 Length = 188440 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Minus Query: 150 gcggcggccgtgctgctcgccgtcg 174 |||||||||||| |||||||||||| Sbjct: 168514 gcggcggccgtggtgctcgccgtcg 168490
>dbj|AP004770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017G06 Length = 150628 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Minus Query: 150 gcggcggccgtgctgctcgccgtcg 174 |||||||||||| |||||||||||| Sbjct: 41515 gcggcggccgtggtgctcgccgtcg 41491
>dbj|AK111124.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-C05, full insert sequence Length = 486 Score = 42.1 bits (21), Expect = 0.99 Identities = 27/29 (93%) Strand = Plus / Minus Query: 118 cggcgatgcccgcgccggcggcgcgggcc 146 |||||| ||||||| |||||||||||||| Sbjct: 202 cggcgacgcccgcggcggcggcgcgggcc 174
>dbj|AK073462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042E16, full insert sequence Length = 1257 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 ggccgtgctgctcgccgtcgc 175 ||||||||||||||||||||| Sbjct: 289 ggccgtgctgctcgccgtcgc 309
>dbj|AK071664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106B19, full insert sequence Length = 2056 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Plus Query: 150 gcggcggccgtgctgctcgccgtcg 174 |||||||||||| |||||||||||| Sbjct: 247 gcggcggccgtggtgctcgccgtcg 271
>dbj|AK058231.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-B12, full insert sequence Length = 1099 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 ggccgtgctgctcgccgtcgc 175 ||||||||||||||||||||| Sbjct: 135 ggccgtgctgctcgccgtcgc 155
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 ccggcggcgcgggccctcgcg 152 ||||||||||||||||||||| Sbjct: 1372451 ccggcggcgcgggccctcgcg 1372431
>gb|AF026065.1|AF026065 Ralstonia sp. E2 positive phenol-degradative gene regulator (poxR), phenol hydroxylase components (poxA, poxB, poxC, poxD, poxE, poxF), and ferredoxin-like protein (poxG) genes, complete cds Length = 9511 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 gatgcccgcgccggcggcgcg 142 ||||||||||||||||||||| Sbjct: 163 gatgcccgcgccggcggcgcg 143
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2 Length = 339972 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 ggccgtgctgctcgccgtcgc 175 ||||||||||||||||||||| Sbjct: 226406 ggccgtgctgctcgccgtcgc 226386
>gb|AD000014.1|MSGY423 Mycobacterium tuberculosis sequence from clone y423 Length = 42741 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 atgcccgcgccggcggcgcgg 143 ||||||||||||||||||||| Sbjct: 26755 atgcccgcgccggcggcgcgg 26775
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 tcgcggcggccgtgctgctcgccg 171 ||||| |||||||||||||||||| Sbjct: 63918 tcgcgacggccgtgctgctcgccg 63941
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 cgcggcggccgtgctgctcgccgt 172 |||||||| ||||||||||||||| Sbjct: 395129 cgcggcgggcgtgctgctcgccgt 395152
>ref|XM_422421.1| PREDICTED: Gallus gallus LOC424582 (LOC424582), mRNA Length = 1351 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 tgctgctcgccgtcgcgtcc 179 |||||||||||||||||||| Sbjct: 762 tgctgctcgccgtcgcgtcc 781
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 cgcggcggccgtgctgctcgccgt 172 |||||||| ||||||||||||||| Sbjct: 1125838 cgcggcgggcgtgctgctcgccgt 1125861
>gb|AC121976.2| Mus musculus BAC clone RP24-286N17 from 8, complete sequence Length = 161146 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 132 ccggcggcgcgggccctcgcggcggccg 159 |||||| |||| |||||||||||||||| Sbjct: 64201 ccggcgccgcgcgccctcgcggcggccg 64228
>ref|XM_541332.2| PREDICTED: Canis familiaris similar to Isoleucyl-tRNA synthetase, cytoplasmic (Isoleucine--tRNA ligase) (IleRS) (IRS) (LOC484216), mRNA Length = 8292 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 agccccgagcccgacaccgc 95 |||||||||||||||||||| Sbjct: 3411 agccccgagcccgacaccgc 3430
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 cctcgcggcggccgtgctgc 165 |||||||||||||||||||| Sbjct: 683158 cctcgcggcggccgtgctgc 683177
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 acgtggtggtgctcgccgac 272 |||||||||||||||||||| Sbjct: 1787801 acgtggtggtgctcgccgac 1787820
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 115 cggcggcgatgcccgcgccggcggcgcg 142 ||||||||||| | |||||||||||||| Sbjct: 3582968 cggcggcgatggctgcgccggcggcgcg 3582995
>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16 Length = 347786 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 ggcggcgatgcccgcgccggcggc 139 |||||||||||| ||||||||||| Sbjct: 225300 ggcggcgatgccggcgccggcggc 225323
>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14 Length = 349146 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 ggcggcgatgcccgcgccggcggc 139 |||||||||||| ||||||||||| Sbjct: 223457 ggcggcgatgccggcgccggcggc 223480
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 cgcggcggccgtgctgctcgccgt 172 |||||||| ||||||||||||||| Sbjct: 1006798 cgcggcgggcgtgctgctcgccgt 1006821
>ref|NM_204970.1| Gallus gallus insulin-like growth factor 2 receptor (IGF2R), mRNA Length = 8767 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 ggcggcgcgggccctcgcggcggc 157 ||||||||||||| |||||||||| Sbjct: 75 ggcggcgcgggccatcgcggcggc 52
>gb|AC150252.1| Unidentified bacterium clone zdt-48a5, complete sequence Length = 38838 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 ggcgatgcccgcgccggcggcgcg 142 ||||| |||||||||||||||||| Sbjct: 37072 ggcgaagcccgcgccggcggcgcg 37049
>gb|AE005824.1| Caulobacter crescentus CB15 section 150 of 359 of the complete genome Length = 10405 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 gcggcgatgcccgcgccggcggcg 140 ||||||||| |||||||||||||| Sbjct: 221 gcggcgatgtccgcgccggcggcg 198
>gb|AE005839.1| Caulobacter crescentus CB15 section 165 of 359 of the complete genome Length = 13036 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 ggccctcgcggcggccgtgctgct 166 |||||| ||||||||||||||||| Sbjct: 7634 ggcccttgcggcggccgtgctgct 7611
>gb|AE011718.1| Xanthomonas axonopodis pv. citri str. 306, section 96 of 469 of the complete genome Length = 12328 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 115 cggcggcgatgcccgcgccggcggcgcg 142 |||||||||| || |||||||||||||| Sbjct: 10653 cggcggcgataccggcgccggcggcgcg 10680
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcggcggcgatgcccgcgcc 133 |||||||||||||||||||| Sbjct: 2967347 tcggcggcgatgcccgcgcc 2967366
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 ccgcgccggcggcgcgggcc 146 |||||||||||||||||||| Sbjct: 2817796 ccgcgccggcggcgcgggcc 2817815
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 ggcgatgcccgcgccggcgg 138 |||||||||||||||||||| Sbjct: 218252 ggcgatgcccgcgccggcgg 218271
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 cgcggcggccgtgctgctcg 168 |||||||||||||||||||| Sbjct: 4521056 cgcggcggccgtgctgctcg 4521075
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 atgcccgcgccggcggcgcg 142 |||||||||||||||||||| Sbjct: 3771659 atgcccgcgccggcggcgcg 3771640
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 cgcggcggccgtgctgctcgccgt 172 |||||||| ||||||||||||||| Sbjct: 838971 cgcggcgggcgtgctgctcgccgt 838994
>gb|AF093117.1|AF093117 Homo sapiens chromosome 7qtelo BAC E3, complete sequence Length = 147216 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ccgccaggagcctcccaccc 31 |||||||||||||||||||| Sbjct: 93939 ccgccaggagcctcccaccc 93920
>gb|U35037.1|GGU35037 Gallus gallus cation-independent mannose-6-phosphate receptor mRNA, complete cds Length = 8767 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 ggcggcgcgggccctcgcggcggc 157 ||||||||||||| |||||||||| Sbjct: 75 ggcggcgcgggccatcgcggcggc 52
>emb|AL591003.16| Mouse DNA sequence from clone RP23-354I24 on chromosome 13, complete sequence Length = 221647 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 132 ccggcggcgcgggccctcgcggcggccg 159 |||||| |||| |||||||||||||||| Sbjct: 50336 ccggcgccgcgcgccctcgcggcggccg 50309
>emb|AL583889.8| Mouse DNA sequence from clone RP23-10K12 on chromosome 15, complete sequence Length = 236344 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 gccaggagcctcccacccgt 33 |||||||||||||||||||| Sbjct: 81408 gccaggagcctcccacccgt 81389 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,912,095 Number of Sequences: 3902068 Number of extensions: 1912095 Number of successful extensions: 48848 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44689 Number of HSP's gapped (non-prelim): 4158 length of query: 297 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 275 effective length of database: 17,147,199,772 effective search space: 4715479937300 effective search space used: 4715479937300 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
