ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet74c04 |
|---|---|
| Clone Library Name | barley_pub |
>PNAA_PRUDU (P81898) Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase| A (EC 3.5.1.52) (PNGase A) (Glycopeptide N-glycosidase) (N-glycanase) [Contains: Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A light chain (PNGase A small chain) Length = 571 Score = 159 bits (402), Expect = 4e-39 Identities = 87/170 (51%), Positives = 110/170 (64%), Gaps = 10/170 (5%) Frame = +2 Query: 2 FEVNRPLHPPRGSSGPCSTLLLSQSFALTLNKPPVTAAYSPPS-CLSGAGDVSLAVLEWR 178 FEV +P+ P+ + PCS L+L FA T + PV A Y+PPS C S S VLEW+ Sbjct: 14 FEVTKPIEVPK--TKPCSQLILQHDFAYTYGQAPVFANYTPPSDCPSQT--FSTIVLEWK 69 Query: 179 ADCHGVQYDRIFGVWLGGAELLRGSTAEPRPGGVTWSVHKDVTKYASLLAAGNSTLAVYL 358 A C Q+DRIFGVWLGG E+LR TAEPRP G+ W+V KD+T+Y SLL + N TLAVYL Sbjct: 70 ATCRRRQFDRIFGVWLGGVEILRSCTAEPRPNGIVWTVEKDITRYYSLLKS-NQTLAVYL 128 Query: 359 GNLIDDTYNGVYYANLTLHLY--------FRRKAQLTAAASRP-ADLIVP 481 GNLID TY G+Y+ N++LH Y F++K A+ ADLI+P Sbjct: 129 GNLIDKTYTGIYHVNISLHFYPAKEKLNSFQQKLDNLASGYHSWADLILP 178
>BEH4_ARATH (Q9ZV88) BES1/BZR1 homolog protein 4| Length = 325 Score = 33.5 bits (75), Expect = 0.33 Identities = 19/49 (38%), Positives = 26/49 (53%) Frame = -1 Query: 276 PPGRGSAVLPRRSSAPPSQTPKMRSYWTPWQSARHSRTASETSPAPLRQ 130 P G SA + S+P ++TP+M T WQ +S S T P+P RQ Sbjct: 160 PGGSISAPVTPPLSSPTARTPRMN---TDWQQLNNSFFVSSTPPSPTRQ 205
>HCN4_HUMAN (Q9Y3Q4) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1203 Score = 33.1 bits (74), Expect = 0.44 Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 3/86 (3%) Frame = -1 Query: 264 GSAVLPRRSSAPPSQTPKMRSY--WTPWQSARHSRTASETSPAPLRQDGGE*AAVTGGLL 91 GS +LP SS PP Q P+ R TP + + + S + PA L QDG + L Sbjct: 1050 GSLLLPPASSPPPPQVPQRRGTPPLTPGRLTQDLKLISASQPA-LPQDGAQ-------TL 1101 Query: 90 RVSAKDWERRSVEQGPELPR-GGCSG 16 R ++ S+ P PR GG SG Sbjct: 1102 RRASPHSSGESMAAFPLFPRAGGGSG 1127
>XLNR_ASPNG (O42804) Transcriptional activator xlnR| Length = 875 Score = 31.6 bits (70), Expect = 1.3 Identities = 22/77 (28%), Positives = 34/77 (44%) Frame = -1 Query: 357 RYTASVELPAARRDAYLVTSLCTDHVTPPGRGSAVLPRRSSAPPSQTPKMRSYWTPWQSA 178 RYT+++ L A + +V DH +P GR S+ + R S T + +Y T Sbjct: 663 RYTSNLTLGATDNEP-VVEGAHLDHTSPSGRSSSTVGSRVSESIVHTRMVVAYGTHIMHV 721 Query: 177 RHSRTASETSPAPLRQD 127 H A + P L +D Sbjct: 722 LHILLAGKWDPVNLLED 738
>SEM6C_MOUSE (Q9WTM3) Semaphorin-6C precursor (Semaphorin Y) (Sema Y)| Length = 931 Score = 31.6 bits (70), Expect = 1.3 Identities = 31/118 (26%), Positives = 42/118 (35%), Gaps = 15/118 (12%) Frame = -1 Query: 333 PAARRDAYLVTSLCTDHVTPPGRGS----AVLPRRSSAPPSQTPKMRSYWTPWQSARHSR 166 P DA L T + PP GS A LP + P +R+ PW+ ++ Sbjct: 668 PPKDGDAAQTPQLYTTFLPPPDGGSPPELACLPTPETTPELPVKHLRASGGPWEWNQNGN 727 Query: 165 TASETSPAPLRQDGGE*AAVTGGLLRVSAKDWERRSVE-----------QGPELPRGG 25 ASE P R G L+R ++VE GP+ PR G Sbjct: 728 NASEGPGRPPRGCSGAGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQPPRKG 785
>UBAP1_HUMAN (Q9NZ09) Ubiquitin-associated protein 1 (UBAP)| Length = 502 Score = 31.6 bits (70), Expect = 1.3 Identities = 19/59 (32%), Positives = 29/59 (49%) Frame = -1 Query: 378 VSSMRLPRYTASVELPAARRDAYLVTSLCTDHVTPPGRGSAVLPRRSSAPPSQTPKMRS 202 +S++ L T L +++ + V S+CT+ +PP G V P S SQ P M S Sbjct: 321 LSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGPTVTPPNFSV--SQVPNMPS 377
>HCN4_MOUSE (O70507) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Brain cyclic nucleotide gated channel 3) (BCNG-3) Length = 1186 Score = 31.2 bits (69), Expect = 1.7 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = -1 Query: 264 GSAVLPRRSSAPPSQTPKMRSY--WTPWQSARHSRTASETSPAPLRQDGGE 118 GS +LP SS PP Q P+ R TP + + + S + PA L QDG + Sbjct: 1035 GSLLLPPASSPPPPQVPQRRGTPPLTPGRLTQDLKLISASQPA-LPQDGAQ 1084
>HCN4_RAT (Q9JKA7) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1198 Score = 31.2 bits (69), Expect = 1.7 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = -1 Query: 264 GSAVLPRRSSAPPSQTPKMRSY--WTPWQSARHSRTASETSPAPLRQDGGE 118 GS +LP SS PP Q P+ R TP + + + S + PA L QDG + Sbjct: 1048 GSLLLPPASSPPPPQVPQRRGTPPLTPGRLTQDLKLISASQPA-LPQDGAQ 1097
>Y115_ADE02 (P03290) Hypothetical protein E-115| Length = 115 Score = 30.4 bits (67), Expect = 2.8 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Frame = -1 Query: 258 AVLPRRSSAPPSQTPKMRSYWTPWQSA----RHSRTASETSPA 142 A P R+S P TP+ TPW +A R ++T S ++PA Sbjct: 54 AAPPPRASCAPRATPRRGWTMTPWSNATWPTRRAKTGSASAPA 96
>S23IP_MOUSE (Q6NZC7) SEC23-interacting protein| Length = 998 Score = 30.0 bits (66), Expect = 3.7 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -1 Query: 306 VTSLCTDHVTPPGRGSAVLPRRSSAPPSQTPKMRSYWTP 190 V+S ++TPP +P SS PP P +++Y P Sbjct: 184 VSSRANPYITPPQLQQCQMPGHSSYPPPSGPPVQTYQMP 222
>KIF17_MOUSE (Q99PW8) Kinesin-like protein KIF17 (MmKIF17)| Length = 1038 Score = 30.0 bits (66), Expect = 3.7 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%) Frame = -1 Query: 291 TDHVTPPGRGSAVLPRRSSAPPSQTPKM--------RSYWTPWQSARHSRTASETSPAPL 136 T H +PPG S+ L S+ PP+QTP+M S P+ A+ ++ + PL Sbjct: 980 TYHNSPPGLNSS-LSNNSALPPTQTPEMPQPRPFRLESLDIPFSKAKRKKSKNSFGGEPL 1038
>BTBD7_HUMAN (Q9P203) BTB/POZ domain-containing protein 7| Length = 1132 Score = 30.0 bits (66), Expect = 3.7 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Frame = +2 Query: 23 HPPRGSSGPCSTLLLSQSFALTLNKPPV---TAAYSPPSCLSGAG 148 HP R S PC+ L A PPV + +PP C S AG Sbjct: 788 HPSRSFSYPCNHSLFHSRTAPKAGPPPVYLPSVKAAPPDCTSTAG 832
>AMER1_HUMAN (Q9Y4X0) AMME syndrome candidate gene 1 protein| Length = 333 Score = 29.6 bits (65), Expect = 4.8 Identities = 30/103 (29%), Positives = 38/103 (36%), Gaps = 9/103 (8%) Frame = +2 Query: 20 LHPPRGSSGPCSTLLLSQSFAL---TLNKPPVTAAYSPPSCLSGAGDVS------LAVLE 172 L PP+G G + LS + TL P A S PS S A S + E Sbjct: 70 LSPPQGCGGGGGGIALSPPPSCGVGTLLSTPAAATSSSPSSSSAASSSSPGSRKMVVSAE 129 Query: 173 WRADCHGVQYDRIFGVWLGGAELLRGSTAEPRPGGVTWSVHKD 301 C V Y ++G T EP P VTW + +D Sbjct: 130 MCCFCFDVLYCHLYGYQQPRTPRF---TNEPYPLFVTWKIGRD 169
>NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alpha subunit,| muscle-specific form (Alpha-NAC, muscle-specific form) Length = 2187 Score = 29.6 bits (65), Expect = 4.8 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%) Frame = -1 Query: 375 SSMRLPRYTASVELPAARRDAYLVTSLCTDHVTPPG---RGSAVLPRRSSAPPSQTPKMR 205 SS + PR +A E PA+ + TSL PP S +P+ + A P+ P Sbjct: 1588 SSKKAPRTSAPKEFPASPSIKPVTTSLA--QTAPPSLQKAPSTTIPKENLAAPAVLPV-- 1643 Query: 204 SYWTPWQSARHSRTASETSPAP 139 S +P AR S + S + AP Sbjct: 1644 SSKSPAAPARASASLSPATAAP 1665
>DPO3X_SALTY (P74876) DNA polymerase III tau subunit (EC 2.7.7.7) [Contains: DNA| polymerase III gamma subunit] Length = 642 Score = 29.3 bits (64), Expect = 6.3 Identities = 22/64 (34%), Positives = 29/64 (45%) Frame = -1 Query: 249 PRRSSAPPSQTPKMRSYWTPWQSARHSRTASETSPAPLRQDGGE*AAVTGGLLRVSAKDW 70 PR+S AP + T M TP Q + S A +TSPAPL + A L R Sbjct: 371 PRQSFAPVAPTAVM----TPPQLQQPSAPAPQTSPAPLPASTSQVLAARNQLQRAQGVTK 426 Query: 69 ERRS 58 ++S Sbjct: 427 TKKS 430
>ATG1_COLLN (P87248) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)| (Autophagy-related protein 1) (Colletotrichum lindemuthianum kinase 1) Length = 675 Score = 29.3 bits (64), Expect = 6.3 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = +2 Query: 8 VNRPLHPPRGSSGPCSTLLLSQSFALTLNKPPVTAAYSPPS 130 + RP P +S P LS + +LN+PP+ A+ SPP+ Sbjct: 410 IRRPPMPQPSTSAPSRPHRLSNA---SLNRPPIRASASPPT 447
>JUND_RAT (P52909) Transcription factor jun-D| Length = 341 Score = 28.9 bits (63), Expect = 8.2 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 8/82 (9%) Frame = -1 Query: 273 PGRGSAVLPRRS--SAPPSQTPKMRSYWT---PWQSARHSRTASETSPAPLRQDG---GE 118 PG G P R+ APP+ + + T Q A + S T+P+ LR DG G Sbjct: 28 PGGGGFAPPGRAFPGAPPTSSMLKKDALTLSLAEQGAAGLKPGSATAPSALRPDGAPDGL 87 Query: 117 *AAVTGGLLRVSAKDWERRSVE 52 A+ GLL++++ + ER ++ Sbjct: 88 LASPDLGLLKLASPELERLIIQ 109
>JUND_MOUSE (P15066) Transcription factor jun-D| Length = 341 Score = 28.9 bits (63), Expect = 8.2 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 8/82 (9%) Frame = -1 Query: 273 PGRGSAVLPRRS--SAPPSQTPKMRSYWT---PWQSARHSRTASETSPAPLRQDG---GE 118 PG G P R+ APP+ + + T Q A + S T+P+ LR DG G Sbjct: 28 PGGGGFAPPGRAFPGAPPTSSMLKKDALTLSLAEQGAAGLKPGSATAPSALRPDGAPDGL 87 Query: 117 *AAVTGGLLRVSAKDWERRSVE 52 A+ GLL++++ + ER ++ Sbjct: 88 LASPDLGLLKLASPELERLIIQ 109
>PACC_MAGGR (Q52B93) pH-response transcription factor pacC/RIM101| Length = 559 Score = 28.9 bits (63), Expect = 8.2 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Frame = -1 Query: 273 PGRGSAVLPRRSSAPPSQTPKMRSYWTPWQSARHSRTA---SETSPAPLRQDGGE*AAVT 103 PG SA L +P S+ SY T +A S TA S S R ++ Sbjct: 411 PGASSAAL-----SPSSRQGSSISYPTLPAAAGSSATAQLGSNFSSVERR--------LS 457 Query: 102 GGLLRVSAKDWERRSVEQGPELPRG 28 GG+L+ +++D ER S G PRG Sbjct: 458 GGILQSASRDRERESSYDGASTPRG 482
>CDK9_RAT (Q641Z4) Cell division protein kinase 9 (EC 2.7.11.22) (EC| 2.7.11.23) (Cyclin-dependent kinase 9) Length = 372 Score = 28.9 bits (63), Expect = 8.2 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Frame = +2 Query: 65 LSQSFALTLNKPP-------VTAAYSPPSCLSGAGDVSLAVLEWRADCHGVQYDRIFGVW 223 L+++F+L N P VT Y PP L G D + W A C + + Sbjct: 170 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIM 229 Query: 224 LGGAELLRGSTAEPRPGGVTWSVHKDVTKY 313 G E + + G +T V +V KY Sbjct: 230 QGNTEQHQLALISQLCGSITPEVWPNVDKY 259
>CDK9_MOUSE (Q99J95) Cell division protein kinase 9 (EC 2.7.11.22) (EC| 2.7.11.23) (Cyclin-dependent kinase 9) Length = 372 Score = 28.9 bits (63), Expect = 8.2 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Frame = +2 Query: 65 LSQSFALTLNKPP-------VTAAYSPPSCLSGAGDVSLAVLEWRADCHGVQYDRIFGVW 223 L+++F+L N P VT Y PP L G D + W A C + + Sbjct: 170 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIM 229 Query: 224 LGGAELLRGSTAEPRPGGVTWSVHKDVTKY 313 G E + + G +T V +V KY Sbjct: 230 QGNTEQHQLALISQLCGSITPEVWPNVDKY 259
>CDK9_BOVIN (Q5EAB2) Cell division protein kinase 9 (EC 2.7.11.22) (EC| 2.7.11.23) (Cyclin-dependent kinase 9) Length = 372 Score = 28.9 bits (63), Expect = 8.2 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Frame = +2 Query: 65 LSQSFALTLNKPP-------VTAAYSPPSCLSGAGDVSLAVLEWRADCHGVQYDRIFGVW 223 L+++F+L N P VT Y PP L G D + W A C + + Sbjct: 170 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIM 229 Query: 224 LGGAELLRGSTAEPRPGGVTWSVHKDVTKY 313 G E + + G +T V +V KY Sbjct: 230 QGNTEQHQLALISQLCGSITPEVWPNVDKY 259
>AMER1_MOUSE (Q9JHT5) AMME syndrome candidate gene 1 protein homolog| Length = 344 Score = 28.9 bits (63), Expect = 8.2 Identities = 26/90 (28%), Positives = 33/90 (36%), Gaps = 1/90 (1%) Frame = +2 Query: 35 GSSGPCSTLLLSQSFALTLNKPPVTAAYSPPSCLSGAGDVSLAV-LEWRADCHGVQYDRI 211 G G + LS L+ P A SP S S G + V E C V Y + Sbjct: 94 GGGGISLSPPLSCGVGTLLSTPAAATASSPSSSSSSPGSRKMVVSAEMCCFCFDVLYCHL 153 Query: 212 FGVWLGGAELLRGSTAEPRPGGVTWSVHKD 301 +G T EP P VTW + +D Sbjct: 154 YGYQQPRTPRF---TNEPYPLFVTWKIGRD 180
>CYTSA_TETNG (Q2KN95) Cytospin-A| Length = 1113 Score = 28.9 bits (63), Expect = 8.2 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Frame = -1 Query: 309 LVTSLCTDHVTPPGRGSAVLPRRSSAPPSQTPKMRS-YWTPWQSA-----RHSRTASETS 148 L+ S + PP G++V P S+AP +TP S TP +A RHS + S ++ Sbjct: 828 LIKSFDSASQGPPSSGASVTPTASAAPLPRTPLSPSPMKTPPAAAVSPIQRHSVSGSMSA 887 Query: 147 PAPLRQDG 124 PL G Sbjct: 888 AKPLSSLG 895
>KIF17_HUMAN (Q9P2E2) Kinesin-like protein KIF17 (KIF3-related motor protein)| Length = 1029 Score = 28.9 bits (63), Expect = 8.2 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Frame = -1 Query: 291 TDHVTPPGRGSAVLPRRSSAPPSQTPKM--------RSYWTPWQSARHSRTASETSPAPL 136 T H +PPG S L S+ PP+Q P+M S P+ A+ ++ S PL Sbjct: 971 THHNSPPGL-SCPLSNNSAIPPTQAPEMPQPRPFRLESLDIPFTKAKRKKSKSNFGSEPL 1029
>EPHB4_HUMAN (P54760) Ephrin type-B receptor 4 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor HTK) Length = 987 Score = 28.9 bits (63), Expect = 8.2 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 5/37 (13%) Frame = +2 Query: 386 GVYYANLTLHLYFRRKAQLTAAASR-----PADLIVP 481 G A L+LHL++++ AQLT +R P +L+VP Sbjct: 182 GACMALLSLHLFYKKCAQLTVNLTRFPETVPRELVVP 218
>CDK9_XENTR (Q6GLD8) Cell division protein kinase 9 (EC 2.7.11.22) (EC| 2.7.11.23) (Cyclin-dependent kinase 9) Length = 376 Score = 28.9 bits (63), Expect = 8.2 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Frame = +2 Query: 65 LSQSFALTLNKPP-------VTAAYSPPSCLSGAGDVSLAVLEWRADCHGVQYDRIFGVW 223 L+++F+L N P VT Y PP L G D + W A C + + Sbjct: 174 LARAFSLAKNSQPNKYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIM 233 Query: 224 LGGAELLRGSTAEPRPGGVTWSVHKDVTKY 313 G E + + G +T V +V KY Sbjct: 234 QGNTEQHQLTLISQLCGSITPEVWPNVDKY 263
>CDK9B_XENLA (Q7ZX42) Cell division protein kinase 9-B (EC 2.7.11.22) (EC| 2.7.11.23) (Cyclin-dependent kinase 9-B) Length = 376 Score = 28.9 bits (63), Expect = 8.2 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Frame = +2 Query: 65 LSQSFALTLNKPP-------VTAAYSPPSCLSGAGDVSLAVLEWRADCHGVQYDRIFGVW 223 L+++F+L N P VT Y PP L G D + W A C + + Sbjct: 174 LARAFSLAKNSQPNKYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIM 233 Query: 224 LGGAELLRGSTAEPRPGGVTWSVHKDVTKY 313 G E + + G +T V +V KY Sbjct: 234 QGNTEQHQLTLISQLCGSITPEVWPNVDKY 263
>CDK9A_XENLA (Q4V862) Cell division protein kinase 9-A (EC 2.7.11.22) (EC| 2.7.11.23) (Cyclin-dependent kinase 9-A) Length = 376 Score = 28.9 bits (63), Expect = 8.2 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Frame = +2 Query: 65 LSQSFALTLNKPP-------VTAAYSPPSCLSGAGDVSLAVLEWRADCHGVQYDRIFGVW 223 L+++F+L N P VT Y PP L G D + W A C + + Sbjct: 174 LARAFSLAKNSQPNKYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIM 233 Query: 224 LGGAELLRGSTAEPRPGGVTWSVHKDVTKY 313 G E + + G +T V +V KY Sbjct: 234 QGNTEQHQLTLISQLCGSITPEVWPNVDKY 263
>ATG13_ASPFU (Q4WHN5) Autophagy-related protein 13| Length = 958 Score = 28.9 bits (63), Expect = 8.2 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 10/67 (14%) Frame = -1 Query: 300 SLCTDHVTPPGRG----SAVLPRRSSAPPSQTPKMRSYWTPWQSARHSRT------ASET 151 SL T H P G SA+ R S S +P + P +AR + T A+E Sbjct: 344 SLSTFHHVGPATGASPISALRAARESVTSSPSPPSSASRRPLSAARAAPTGRAAALAAEA 403 Query: 150 SPAPLRQ 130 SP+PLR+ Sbjct: 404 SPSPLRR 410
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 28.9 bits (63), Expect = 8.2 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 10/58 (17%) Frame = -1 Query: 279 TPPGRGSAVLPRRSSAP----------PSQTPKMRSYWTPWQSARHSRTASETSPAPL 136 T PG ++ LP RS+ P PSQ P + AR + TAS S PL Sbjct: 1685 TVPGVATSTLPTRSALPGTTGSLGTWRPSQPPTLAPTTMATSRARPTGTASTASKEPL 1742
>PO6F2_HUMAN (P78424) POU domain, class 6, transcription factor 2| (Retina-derived POU-domain factor 1) (RPF-1) Length = 684 Score = 28.9 bits (63), Expect = 8.2 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = -1 Query: 279 TPPGRGSAVLPRRSSAPPSQTPKMRSYWTPWQSARHSRTASETSPAPLRQ 130 TPP + P S PP+ T +++ P Q HS + ++ P+P +Q Sbjct: 216 TPPQQP----PPASQQPPAPTSQLQQAPQPQQHQPHSHSHNQNQPSPTQQ 261 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,956,412 Number of Sequences: 219361 Number of extensions: 866342 Number of successful extensions: 3918 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3741 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3911 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
