ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet74c04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_188354.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1743 Score = 367 bits (185), Expect = 2e-98 Identities = 266/293 (90%) Strand = Plus / Plus Query: 138 gcggcgcgggggacgtctcgctggctgtcctcgagtggcgcgccgactgccacggcgtcc 197 |||||||| | | |||||| || || || |||||||||||||||||||||| |||| | Sbjct: 317 gcggcgcgcgcgccgtctccctcgcggtgctcgagtggcgcgccgactgccgcggcacgc 376 Query: 198 agtacgaccgcatcttcggcgtctggctcggcggggcggagctcctgcgcggcagcaccg 257 |||| ||||||||||||||||||||||||||||||||||||||| |||| || ||||||| Sbjct: 377 agtatgaccgcatcttcggcgtctggctcggcggggcggagctcatgcgggggagcaccg 436 Query: 258 ccgagccgcgcccgggcggcgtcacgtggtccgtgcacaaggacgtcaccaagtacgcgt 317 ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 437 ccgagccgcgccccggcggcgtcacttggtcggtgcacaaggacgtcaccaagtacgcgt 496 Query: 318 ccctcctcgcggccggcaactccacgctcgccgtgtacctcggcaacctcatcgacgaca 377 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 497 cactcctcgccgccggcaactccacgctcgccgtgtacctcggcaacctcatcgacgaga 556 Query: 378 cctacaacggcgtctactacgcgaacctcacgcttcacctctacttccggcgc 430 | ||||||||||| ||| |||| |||||||||| |||||||||||||||||| Sbjct: 557 cgtacaacggcgtgtacaacgccgacctcacgctccacctctacttccggcgc 609 Score = 117 bits (59), Expect = 4e-23 Identities = 110/127 (86%) Strand = Plus / Plus Query: 1 cttcgaggtcaaccggccgctgcacccgccgcgggggagctcggggccctgctccacgct 60 |||||||||| | |||||||||| ||||||||||||||||| || || ||||| ||||| Sbjct: 168 cttcgaggtcgaacggccgctgcggccgccgcgggggagctccggcccgtgctcgacgct 227 Query: 61 cctcctctcccagtccttcgcgctcaccctcaacaagccgccggtcaccgccgcctactc 120 ||||||||||| ||||||||| ||||| ||| ||||||||| | ||||| |||||||| Sbjct: 228 gctcctctcccactccttcgcgttcaccttcaccaagccgcctgcgaccgcggcctactc 287 Query: 121 gccgccg 127 ||||||| Sbjct: 288 gccgccg 294
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 367 bits (185), Expect = 2e-98 Identities = 266/293 (90%) Strand = Plus / Minus Query: 138 gcggcgcgggggacgtctcgctggctgtcctcgagtggcgcgccgactgccacggcgtcc 197 |||||||| | | |||||| || || || |||||||||||||||||||||| |||| | Sbjct: 5838298 gcggcgcgcgcgccgtctccctcgcggtgctcgagtggcgcgccgactgccgcggcacgc 5838239 Query: 198 agtacgaccgcatcttcggcgtctggctcggcggggcggagctcctgcgcggcagcaccg 257 |||| ||||||||||||||||||||||||||||||||||||||| |||| || ||||||| Sbjct: 5838238 agtatgaccgcatcttcggcgtctggctcggcggggcggagctcatgcgggggagcaccg 5838179 Query: 258 ccgagccgcgcccgggcggcgtcacgtggtccgtgcacaaggacgtcaccaagtacgcgt 317 ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 5838178 ccgagccgcgccccggcggcgtcacttggtcggtgcacaaggacgtcaccaagtacgcgt 5838119 Query: 318 ccctcctcgcggccggcaactccacgctcgccgtgtacctcggcaacctcatcgacgaca 377 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5838118 cactcctcgccgccggcaactccacgctcgccgtgtacctcggcaacctcatcgacgaga 5838059 Query: 378 cctacaacggcgtctactacgcgaacctcacgcttcacctctacttccggcgc 430 | ||||||||||| ||| |||| |||||||||| |||||||||||||||||| Sbjct: 5838058 cgtacaacggcgtgtacaacgccgacctcacgctccacctctacttccggcgc 5838006 Score = 182 bits (92), Expect = 7e-43 Identities = 223/266 (83%), Gaps = 3/266 (1%) Strand = Plus / Minus Query: 164 gtcctcgagtggcgcgccgactgccacggcgtccagtacgaccgcatcttcggcgtctgg 223 |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| Sbjct: 5876452 gtcctcgagtggcgcgccacctgccgcggcgtccagttcgaccgcatcttcggcgtctgg 5876393 Query: 224 ctcggcggggcggagctcctgcgcggcagcaccgccgagccgcgcccgggcggcgtcacg 283 |||||||| | |||||||| ||| || |||| || |||||| | || |||||| Sbjct: 5876392 ctcggcggcgtcgagctcctccgcagctgcacggcggagccgaggcccaagggcgtcgtc 5876333 Query: 284 tggtccgtgcacaaggacgtcaccaagtacgcgtccctcctcgcggccggcaa---ctcc 340 ||||||||| ||||||||||||||| ||||||||||||||||| ||| |||| |||| Sbjct: 5876332 tggtccgtgtccaaggacgtcaccaaatacgcgtccctcctcgccgcccgcaactcctcc 5876273 Query: 341 acgctcgccgtgtacctcggcaacctcatcgacgacacctacaacggcgtctactacgcg 400 || |||||||| ||||||| ||||||| || ||||| |||| |||||||||| |||| Sbjct: 5876272 accctcgccgtctacctcgccaacctcgtcaacgaccagtacaccggcgtctaccacgcc 5876213 Query: 401 aacctcacgcttcacctctacttccg 426 || ||||||| |||||||||||||| Sbjct: 5876212 aatgtcacgctccacctctacttccg 5876187 Score = 167 bits (84), Expect = 4e-38 Identities = 189/224 (84%) Strand = Plus / Minus Query: 153 tctcgctggctgtcctcgagtggcgcgccgactgccacggcgtccagtacgaccgcatct 212 ||||||| ||||| ||||||||||||||| ||||| ||||||||||| ||||||||||| Sbjct: 5842276 tctcgcttgctgttctcgagtggcgcgccacctgccgcggcgtccagttcgaccgcatct 5842217 Query: 213 tcggcgtctggctcggcggggcggagctcctgcgcggcagcaccgccgagccgcgcccgg 272 | || || ||||||||||| | |||||||| ||| || |||| || |||||| | || Sbjct: 5842216 ttggagtttggctcggcggcgtcgagctcctccgcagctgcacggcggagccgaggccca 5842157 Query: 273 gcggcgtcacgtggtccgtgcacaaggacgtcaccaagtacgcgtccctcctcgcggccg 332 ||| | ||||||||| ||| |||||||||| |||||||||||||||||| |||| Sbjct: 5842156 atggcattgtgtggtccgtctccaaagacgtcaccaggtacgcgtccctcctcgccgccg 5842097 Query: 333 gcaactccacgctcgccgtgtacctcggcaacctcatcgacgac 376 |||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 5842096 gcaactccaccctcgccgtctacctcggcaacctcatcgacgac 5842053 Score = 117 bits (59), Expect = 4e-23 Identities = 110/127 (86%) Strand = Plus / Minus Query: 1 cttcgaggtcaaccggccgctgcacccgccgcgggggagctcggggccctgctccacgct 60 |||||||||| | |||||||||| ||||||||||||||||| || || ||||| ||||| Sbjct: 5838447 cttcgaggtcgaacggccgctgcggccgccgcgggggagctccggcccgtgctcgacgct 5838388 Query: 61 cctcctctcccagtccttcgcgctcaccctcaacaagccgccggtcaccgccgcctactc 120 ||||||||||| ||||||||| ||||| ||| ||||||||| | ||||| |||||||| Sbjct: 5838387 gctcctctcccactccttcgcgttcaccttcaccaagccgcctgcgaccgcggcctactc 5838328 Query: 121 gccgccg 127 ||||||| Sbjct: 5838327 gccgccg 5838321 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 167 ctcgagtggcgcgccgactgccacggcgtccagtacgaccgcatcttcggcgtctggctc 226 ||||||||| |||||||||||| |||| ||||| |||||||||||||||||| |||||| Sbjct: 5829386 ctcgagtggagcgccgactgccgcggccgccagttcgaccgcatcttcggcgtgtggctc 5829327 Query: 227 ggcggggcggagctcctgcgcggcagcaccgccgagccgcgc 268 ||| || |||||||||||| || ||||||| ||||||||| Sbjct: 5829326 tccggcgccgagctcctgcgcagctgcaccgcggagccgcgc 5829285 Score = 97.6 bits (49), Expect = 3e-17 Identities = 67/73 (91%) Strand = Plus / Minus Query: 353 tacctcggcaacctcatcgacgacacctacaacggcgtctactacgcgaacctcacgctt 412 |||||||||||||||||||| |||||||||| ||||||||| |||| ||||||||||| Sbjct: 5826732 tacctcggcaacctcatcgatgacacctacactggcgtctaccacgccaacctcacgctc 5826673 Query: 413 cacctctacttcc 425 ||||||||||||| Sbjct: 5826672 cacctctacttcc 5826660 Score = 83.8 bits (42), Expect = 5e-13 Identities = 87/102 (85%) Strand = Plus / Minus Query: 167 ctcgagtggcgcgccgactgccacggcgtccagtacgaccgcatcttcggcgtctggctc 226 ||||||||| ||||||||||| ||| ||||| |||||||||||||||||| |||||| Sbjct: 5826915 ctcgagtggagcgccgactgcaggggccgccagttcgaccgcatcttcggcgtgtggctc 5826856 Query: 227 ggcggggcggagctcctgcgcggcagcaccgccgagccgcgc 268 ||| || |||||||||||| || ||||||| ||||||||| Sbjct: 5826855 tccggcgccgagctcctgcgcagctgcaccgcggagccgcgc 5826814 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 345 tcgccgtgtacctcggcaacctcatcgacgacacctacaacggcgtctactacgcgaacc 404 |||| ||||||||||| |||||| ||||| ||| |||| |||||||||| |||| |||| Sbjct: 5829211 tcgcggtgtacctcgggaacctcgtcgacagcacgtacaccggcgtctaccacgccaacc 5829152 Query: 405 tcacgcttcacctctacttcc 425 ||||||| ||||||||||||| Sbjct: 5829151 tcacgctccacctctacttcc 5829131 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 1 cttcgaggtcaaccggccgctgcacccgccgcgggggagctcggggccctgctccacgct 60 ||||||||| ||||||||| | |||||||| ||| |||| || || ||||||||||| Sbjct: 5876627 cttcgaggtggaccggccgcaccgcccgccgccgggcagcttcggcccgtgctccacgct 5876568 Query: 61 cctcctctcccagtccttcg 80 ||||||||||| ||||||| Sbjct: 5876567 gctcctctcccactccttcg 5876548 Score = 52.0 bits (26), Expect = 0.002 Identities = 101/126 (80%) Strand = Plus / Minus Query: 1 cttcgaggtcaaccggccgctgcacccgccgcgggggagctcggggccctgctccacgct 60 ||||||||| |||||||||| | ||||| | ||||||||| || || |||||||| || Sbjct: 5842440 cttcgaggtggaccggccgctccggccgcctccggggagctccggcccatgctccaccct 5842381 Query: 61 cctcctctcccagtccttcgcgctcaccctcaacaagccgccggtcaccgccgcctactc 120 ||||| ||| ||||||| ||||| || |||||| |||||||||||||| ||||| Sbjct: 5842380 gctcctgtccagctccttcggcttcacctacaccaagccaccggtcaccgccgcgtactc 5842321 Query: 121 gccgcc 126 ||||| Sbjct: 5842320 cccgcc 5842315 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 44 gggccctgctccacgctcctcctctcccagtccttcg 80 ||||||||||| ||||| ||||||||||| ||||||| Sbjct: 5827050 gggccctgctcgacgctgctcctctcccactccttcg 5827014 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 104 gtcaccgccgcctactcgccgccgtcctgcct 135 ||||||||||||||| ||||||| |||||||| Sbjct: 5829470 gtcaccgccgcctacgcgccgccttcctgcct 5829439 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 44 gggccctgctccacgctcctcctctcccagtccttcg 80 ||||||||||| ||||| ||||||||| | ||||||| Sbjct: 5829530 gggccctgctcgacgctgctcctctccaactccttcg 5829494
>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0016I09 Length = 148517 Score = 367 bits (185), Expect = 2e-98 Identities = 266/293 (90%) Strand = Plus / Minus Query: 138 gcggcgcgggggacgtctcgctggctgtcctcgagtggcgcgccgactgccacggcgtcc 197 |||||||| | | |||||| || || || |||||||||||||||||||||| |||| | Sbjct: 42039 gcggcgcgcgcgccgtctccctcgcggtgctcgagtggcgcgccgactgccgcggcacgc 41980 Query: 198 agtacgaccgcatcttcggcgtctggctcggcggggcggagctcctgcgcggcagcaccg 257 |||| ||||||||||||||||||||||||||||||||||||||| |||| || ||||||| Sbjct: 41979 agtatgaccgcatcttcggcgtctggctcggcggggcggagctcatgcgggggagcaccg 41920 Query: 258 ccgagccgcgcccgggcggcgtcacgtggtccgtgcacaaggacgtcaccaagtacgcgt 317 ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 41919 ccgagccgcgccccggcggcgtcacttggtcggtgcacaaggacgtcaccaagtacgcgt 41860 Query: 318 ccctcctcgcggccggcaactccacgctcgccgtgtacctcggcaacctcatcgacgaca 377 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 41859 cactcctcgccgccggcaactccacgctcgccgtgtacctcggcaacctcatcgacgaga 41800 Query: 378 cctacaacggcgtctactacgcgaacctcacgcttcacctctacttccggcgc 430 | ||||||||||| ||| |||| |||||||||| |||||||||||||||||| Sbjct: 41799 cgtacaacggcgtgtacaacgccgacctcacgctccacctctacttccggcgc 41747 Score = 182 bits (92), Expect = 7e-43 Identities = 223/266 (83%), Gaps = 3/266 (1%) Strand = Plus / Minus Query: 164 gtcctcgagtggcgcgccgactgccacggcgtccagtacgaccgcatcttcggcgtctgg 223 |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| Sbjct: 80193 gtcctcgagtggcgcgccacctgccgcggcgtccagttcgaccgcatcttcggcgtctgg 80134 Query: 224 ctcggcggggcggagctcctgcgcggcagcaccgccgagccgcgcccgggcggcgtcacg 283 |||||||| | |||||||| ||| || |||| || |||||| | || |||||| Sbjct: 80133 ctcggcggcgtcgagctcctccgcagctgcacggcggagccgaggcccaagggcgtcgtc 80074 Query: 284 tggtccgtgcacaaggacgtcaccaagtacgcgtccctcctcgcggccggcaa---ctcc 340 ||||||||| ||||||||||||||| ||||||||||||||||| ||| |||| |||| Sbjct: 80073 tggtccgtgtccaaggacgtcaccaaatacgcgtccctcctcgccgcccgcaactcctcc 80014 Query: 341 acgctcgccgtgtacctcggcaacctcatcgacgacacctacaacggcgtctactacgcg 400 || |||||||| ||||||| ||||||| || ||||| |||| |||||||||| |||| Sbjct: 80013 accctcgccgtctacctcgccaacctcgtcaacgaccagtacaccggcgtctaccacgcc 79954 Query: 401 aacctcacgcttcacctctacttccg 426 || ||||||| |||||||||||||| Sbjct: 79953 aatgtcacgctccacctctacttccg 79928 Score = 167 bits (84), Expect = 4e-38 Identities = 189/224 (84%) Strand = Plus / Minus Query: 153 tctcgctggctgtcctcgagtggcgcgccgactgccacggcgtccagtacgaccgcatct 212 ||||||| ||||| ||||||||||||||| ||||| ||||||||||| ||||||||||| Sbjct: 46017 tctcgcttgctgttctcgagtggcgcgccacctgccgcggcgtccagttcgaccgcatct 45958 Query: 213 tcggcgtctggctcggcggggcggagctcctgcgcggcagcaccgccgagccgcgcccgg 272 | || || ||||||||||| | |||||||| ||| || |||| || |||||| | || Sbjct: 45957 ttggagtttggctcggcggcgtcgagctcctccgcagctgcacggcggagccgaggccca 45898 Query: 273 gcggcgtcacgtggtccgtgcacaaggacgtcaccaagtacgcgtccctcctcgcggccg 332 ||| | ||||||||| ||| |||||||||| |||||||||||||||||| |||| Sbjct: 45897 atggcattgtgtggtccgtctccaaagacgtcaccaggtacgcgtccctcctcgccgccg 45838 Query: 333 gcaactccacgctcgccgtgtacctcggcaacctcatcgacgac 376 |||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 45837 gcaactccaccctcgccgtctacctcggcaacctcatcgacgac 45794 Score = 117 bits (59), Expect = 4e-23 Identities = 110/127 (86%) Strand = Plus / Minus Query: 1 cttcgaggtcaaccggccgctgcacccgccgcgggggagctcggggccctgctccacgct 60 |||||||||| | |||||||||| ||||||||||||||||| || || ||||| ||||| Sbjct: 42188 cttcgaggtcgaacggccgctgcggccgccgcgggggagctccggcccgtgctcgacgct 42129 Query: 61 cctcctctcccagtccttcgcgctcaccctcaacaagccgccggtcaccgccgcctactc 120 ||||||||||| ||||||||| ||||| ||| ||||||||| | ||||| |||||||| Sbjct: 42128 gctcctctcccactccttcgcgttcaccttcaccaagccgcctgcgaccgcggcctactc 42069 Query: 121 gccgccg 127 ||||||| Sbjct: 42068 gccgccg 42062 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 167 ctcgagtggcgcgccgactgccacggcgtccagtacgaccgcatcttcggcgtctggctc 226 ||||||||| |||||||||||| |||| ||||| |||||||||||||||||| |||||| Sbjct: 33127 ctcgagtggagcgccgactgccgcggccgccagttcgaccgcatcttcggcgtgtggctc 33068 Query: 227 ggcggggcggagctcctgcgcggcagcaccgccgagccgcgc 268 ||| || |||||||||||| || ||||||| ||||||||| Sbjct: 33067 tccggcgccgagctcctgcgcagctgcaccgcggagccgcgc 33026 Score = 97.6 bits (49), Expect = 3e-17 Identities = 67/73 (91%) Strand = Plus / Minus Query: 353 tacctcggcaacctcatcgacgacacctacaacggcgtctactacgcgaacctcacgctt 412 |||||||||||||||||||| |||||||||| ||||||||| |||| ||||||||||| Sbjct: 30473 tacctcggcaacctcatcgatgacacctacactggcgtctaccacgccaacctcacgctc 30414 Query: 413 cacctctacttcc 425 ||||||||||||| Sbjct: 30413 cacctctacttcc 30401 Score = 83.8 bits (42), Expect = 5e-13 Identities = 87/102 (85%) Strand = Plus / Minus Query: 167 ctcgagtggcgcgccgactgccacggcgtccagtacgaccgcatcttcggcgtctggctc 226 ||||||||| ||||||||||| ||| ||||| |||||||||||||||||| |||||| Sbjct: 30656 ctcgagtggagcgccgactgcaggggccgccagttcgaccgcatcttcggcgtgtggctc 30597 Query: 227 ggcggggcggagctcctgcgcggcagcaccgccgagccgcgc 268 ||| || |||||||||||| || ||||||| ||||||||| Sbjct: 30596 tccggcgccgagctcctgcgcagctgcaccgcggagccgcgc 30555 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 345 tcgccgtgtacctcggcaacctcatcgacgacacctacaacggcgtctactacgcgaacc 404 |||| ||||||||||| |||||| ||||| ||| |||| |||||||||| |||| |||| Sbjct: 32952 tcgcggtgtacctcgggaacctcgtcgacagcacgtacaccggcgtctaccacgccaacc 32893 Query: 405 tcacgcttcacctctacttcc 425 ||||||| ||||||||||||| Sbjct: 32892 tcacgctccacctctacttcc 32872 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 1 cttcgaggtcaaccggccgctgcacccgccgcgggggagctcggggccctgctccacgct 60 ||||||||| ||||||||| | |||||||| ||| |||| || || ||||||||||| Sbjct: 80368 cttcgaggtggaccggccgcaccgcccgccgccgggcagcttcggcccgtgctccacgct 80309 Query: 61 cctcctctcccagtccttcg 80 ||||||||||| ||||||| Sbjct: 80308 gctcctctcccactccttcg 80289 Score = 52.0 bits (26), Expect = 0.002 Identities = 101/126 (80%) Strand = Plus / Minus Query: 1 cttcgaggtcaaccggccgctgcacccgccgcgggggagctcggggccctgctccacgct 60 ||||||||| |||||||||| | ||||| | ||||||||| || || |||||||| || Sbjct: 46181 cttcgaggtggaccggccgctccggccgcctccggggagctccggcccatgctccaccct 46122 Query: 61 cctcctctcccagtccttcgcgctcaccctcaacaagccgccggtcaccgccgcctactc 120 ||||| ||| ||||||| ||||| || |||||| |||||||||||||| ||||| Sbjct: 46121 gctcctgtccagctccttcggcttcacctacaccaagccaccggtcaccgccgcgtactc 46062 Query: 121 gccgcc 126 ||||| Sbjct: 46061 cccgcc 46056 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 44 gggccctgctccacgctcctcctctcccagtccttcg 80 ||||||||||| ||||| ||||||||||| ||||||| Sbjct: 30791 gggccctgctcgacgctgctcctctcccactccttcg 30755 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 104 gtcaccgccgcctactcgccgccgtcctgcct 135 ||||||||||||||| ||||||| |||||||| Sbjct: 33211 gtcaccgccgcctacgcgccgccttcctgcct 33180 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 44 gggccctgctccacgctcctcctctcccagtccttcg 80 ||||||||||| ||||| ||||||||| | ||||||| Sbjct: 33271 gggccctgctcgacgctgctcctctccaactccttcg 33235
>ref|NM_188364.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1851 Score = 182 bits (92), Expect = 7e-43 Identities = 223/266 (83%), Gaps = 3/266 (1%) Strand = Plus / Plus Query: 164 gtcctcgagtggcgcgccgactgccacggcgtccagtacgaccgcatcttcggcgtctgg 223 |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| Sbjct: 352 gtcctcgagtggcgcgccacctgccgcggcgtccagttcgaccgcatcttcggcgtctgg 411 Query: 224 ctcggcggggcggagctcctgcgcggcagcaccgccgagccgcgcccgggcggcgtcacg 283 |||||||| | |||||||| ||| || |||| || |||||| | || |||||| Sbjct: 412 ctcggcggcgtcgagctcctccgcagctgcacggcggagccgaggcccaagggcgtcgtc 471 Query: 284 tggtccgtgcacaaggacgtcaccaagtacgcgtccctcctcgcggccggcaa---ctcc 340 ||||||||| ||||||||||||||| ||||||||||||||||| ||| |||| |||| Sbjct: 472 tggtccgtgtccaaggacgtcaccaaatacgcgtccctcctcgccgcccgcaactcctcc 531 Query: 341 acgctcgccgtgtacctcggcaacctcatcgacgacacctacaacggcgtctactacgcg 400 || |||||||| ||||||| ||||||| || ||||| |||| |||||||||| |||| Sbjct: 532 accctcgccgtctacctcgccaacctcgtcaacgaccagtacaccggcgtctaccacgcc 591 Query: 401 aacctcacgcttcacctctacttccg 426 || ||||||| |||||||||||||| Sbjct: 592 aatgtcacgctccacctctacttccg 617 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 1 cttcgaggtcaaccggccgctgcacccgccgcgggggagctcggggccctgctccacgct 60 ||||||||| ||||||||| | |||||||| ||| |||| || || ||||||||||| Sbjct: 177 cttcgaggtggaccggccgcaccgcccgccgccgggcagcttcggcccgtgctccacgct 236 Query: 61 cctcctctcccagtccttcg 80 ||||||||||| ||||||| Sbjct: 237 gctcctctcccactccttcg 256
>dbj|AK105750.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B10, full insert sequence Length = 2056 Score = 182 bits (92), Expect = 7e-43 Identities = 223/266 (83%), Gaps = 3/266 (1%) Strand = Plus / Plus Query: 164 gtcctcgagtggcgcgccgactgccacggcgtccagtacgaccgcatcttcggcgtctgg 223 |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| Sbjct: 398 gtcctcgagtggcgcgccacctgccgcggcgtccagttcgaccgcatcttcggcgtctgg 457 Query: 224 ctcggcggggcggagctcctgcgcggcagcaccgccgagccgcgcccgggcggcgtcacg 283 |||||||| | |||||||| ||| || |||| || |||||| | || |||||| Sbjct: 458 ctcggcggcgtcgagctcctccgcagctgcacggcggagccgaggcccaagggcgtcgtc 517 Query: 284 tggtccgtgcacaaggacgtcaccaagtacgcgtccctcctcgcggccggcaa---ctcc 340 ||||||||| ||||||||||||||| ||||||||||||||||| ||| |||| |||| Sbjct: 518 tggtccgtgtccaaggacgtcaccaaatacgcgtccctcctcgccgcccgcaactcctcc 577 Query: 341 acgctcgccgtgtacctcggcaacctcatcgacgacacctacaacggcgtctactacgcg 400 || |||||||| ||||||| ||||||| || ||||| |||| |||||||||| |||| Sbjct: 578 accctcgccgtctacctcgccaacctcgtcaacgaccagtacaccggcgtctaccacgcc 637 Query: 401 aacctcacgcttcacctctacttccg 426 || ||||||| |||||||||||||| Sbjct: 638 aatgtcacgctccacctctacttccg 663 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 1 cttcgaggtcaaccggccgctgcacccgccgcgggggagctcggggccctgctccacgct 60 ||||||||| ||||||||| | |||||||| ||| |||| || || ||||||||||| Sbjct: 223 cttcgaggtggaccggccgcaccgcccgccgccgggcagcttcggcccgtgctccacgct 282 Query: 61 cctcctctcccagtccttcg 80 ||||||||||| ||||||| Sbjct: 283 gctcctctcccactccttcg 302
>ref|NM_188355.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1839 Score = 167 bits (84), Expect = 4e-38 Identities = 189/224 (84%) Strand = Plus / Plus Query: 153 tctcgctggctgtcctcgagtggcgcgccgactgccacggcgtccagtacgaccgcatct 212 ||||||| ||||| ||||||||||||||| ||||| ||||||||||| ||||||||||| Sbjct: 299 tctcgcttgctgttctcgagtggcgcgccacctgccgcggcgtccagttcgaccgcatct 358 Query: 213 tcggcgtctggctcggcggggcggagctcctgcgcggcagcaccgccgagccgcgcccgg 272 | || || ||||||||||| | |||||||| ||| || |||| || |||||| | || Sbjct: 359 ttggagtttggctcggcggcgtcgagctcctccgcagctgcacggcggagccgaggccca 418 Query: 273 gcggcgtcacgtggtccgtgcacaaggacgtcaccaagtacgcgtccctcctcgcggccg 332 ||| | ||||||||| ||| |||||||||| |||||||||||||||||| |||| Sbjct: 419 atggcattgtgtggtccgtctccaaagacgtcaccaggtacgcgtccctcctcgccgccg 478 Query: 333 gcaactccacgctcgccgtgtacctcggcaacctcatcgacgac 376 |||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 479 gcaactccaccctcgccgtctacctcggcaacctcatcgacgac 522 Score = 52.0 bits (26), Expect = 0.002 Identities = 101/126 (80%) Strand = Plus / Plus Query: 1 cttcgaggtcaaccggccgctgcacccgccgcgggggagctcggggccctgctccacgct 60 ||||||||| |||||||||| | ||||| | ||||||||| || || |||||||| || Sbjct: 135 cttcgaggtggaccggccgctccggccgcctccggggagctccggcccatgctccaccct 194 Query: 61 cctcctctcccagtccttcgcgctcaccctcaacaagccgccggtcaccgccgcctactc 120 ||||| ||| ||||||| ||||| || |||||| |||||||||||||| ||||| Sbjct: 195 gctcctgtccagctccttcggcttcacctacaccaagccaccggtcaccgccgcgtactc 254 Query: 121 gccgcc 126 ||||| Sbjct: 255 cccgcc 260
>dbj|AK073127.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033011F02, full insert sequence Length = 2041 Score = 167 bits (84), Expect = 4e-38 Identities = 189/224 (84%) Strand = Plus / Minus Query: 153 tctcgctggctgtcctcgagtggcgcgccgactgccacggcgtccagtacgaccgcatct 212 ||||||| ||||| ||||||||||||||| ||||| ||||||||||| ||||||||||| Sbjct: 1550 tctcgcttgctgttctcgagtggcgcgccacctgccgcggcgtccagttcgaccgcatct 1491 Query: 213 tcggcgtctggctcggcggggcggagctcctgcgcggcagcaccgccgagccgcgcccgg 272 | || || ||||||||||| | |||||||| ||| || |||| || |||||| | || Sbjct: 1490 ttggagtttggctcggcggcgtcgagctcctccgcagctgcacggcggagccgaggccca 1431 Query: 273 gcggcgtcacgtggtccgtgcacaaggacgtcaccaagtacgcgtccctcctcgcggccg 332 ||| | ||||||||| ||| |||||||||| |||||||||||||||||| |||| Sbjct: 1430 atggcattgtgtggtccgtctccaaagacgtcaccaggtacgcgtccctcctcgccgccg 1371 Query: 333 gcaactccacgctcgccgtgtacctcggcaacctcatcgacgac 376 |||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 1370 gcaactccaccctcgccgtctacctcggcaacctcatcgacgac 1327 Score = 52.0 bits (26), Expect = 0.002 Identities = 101/126 (80%) Strand = Plus / Minus Query: 1 cttcgaggtcaaccggccgctgcacccgccgcgggggagctcggggccctgctccacgct 60 ||||||||| |||||||||| | ||||| | ||||||||| || || |||||||| || Sbjct: 1714 cttcgaggtggaccggccgctccggccgcctccggggagctccggcccatgctccaccct 1655 Query: 61 cctcctctcccagtccttcgcgctcaccctcaacaagccgccggtcaccgccgcctactc 120 ||||| ||| ||||||| ||||| || |||||| |||||||||||||| ||||| Sbjct: 1654 gctcctgtccagctccttcggcttcacctacaccaagccaccggtcaccgccgcgtactc 1595 Query: 121 gccgcc 126 ||||| Sbjct: 1594 cccgcc 1589
>ref|NM_188352.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1872 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Plus Query: 167 ctcgagtggcgcgccgactgccacggcgtccagtacgaccgcatcttcggcgtctggctc 226 ||||||||| |||||||||||| |||| ||||| |||||||||||||||||| |||||| Sbjct: 379 ctcgagtggagcgccgactgccgcggccgccagttcgaccgcatcttcggcgtgtggctc 438 Query: 227 ggcggggcggagctcctgcgcggcagcaccgccgagccgcgc 268 ||| || |||||||||||| || ||||||| ||||||||| Sbjct: 439 tccggcgccgagctcctgcgcagctgcaccgcggagccgcgc 480 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Plus Query: 345 tcgccgtgtacctcggcaacctcatcgacgacacctacaacggcgtctactacgcgaacc 404 |||| ||||||||||| |||||| ||||| ||| |||| |||||||||| |||| |||| Sbjct: 554 tcgcggtgtacctcgggaacctcgtcgacagcacgtacaccggcgtctaccacgccaacc 613 Query: 405 tcacgcttcacctctacttcc 425 ||||||| ||||||||||||| Sbjct: 614 tcacgctccacctctacttcc 634 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Plus Query: 104 gtcaccgccgcctactcgccgccgtcctgcct 135 ||||||||||||||| ||||||| |||||||| Sbjct: 295 gtcaccgccgcctacgcgccgccttcctgcct 326 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 44 gggccctgctccacgctcctcctctcccagtccttcg 80 ||||||||||| ||||| ||||||||| | ||||||| Sbjct: 235 gggccctgctcgacgctgctcctctccaactccttcg 271
>dbj|AK103341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126B18, full insert sequence Length = 2279 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Plus Query: 167 ctcgagtggcgcgccgactgccacggcgtccagtacgaccgcatcttcggcgtctggctc 226 ||||||||| |||||||||||| |||| ||||| |||||||||||||||||| |||||| Sbjct: 449 ctcgagtggagcgccgactgccgcggccgccagttcgaccgcatcttcggcgtgtggctc 508 Query: 227 ggcggggcggagctcctgcgcggcagcaccgccgagccgcgc 268 ||| || |||||||||||| || ||||||| ||||||||| Sbjct: 509 tccggcgccgagctcctgcgcagctgcaccgcggagccgcgc 550 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Plus Query: 345 tcgccgtgtacctcggcaacctcatcgacgacacctacaacggcgtctactacgcgaacc 404 |||| ||||||||||| |||||| ||||| ||| |||| |||||||||| |||| |||| Sbjct: 624 tcgcggtgtacctcgggaacctcgtcgacagcacgtacaccggcgtctaccacgccaacc 683 Query: 405 tcacgcttcacctctacttcc 425 ||||||| ||||||||||||| Sbjct: 684 tcacgctccacctctacttcc 704 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Plus Query: 104 gtcaccgccgcctactcgccgccgtcctgcct 135 ||||||||||||||| ||||||| |||||||| Sbjct: 365 gtcaccgccgcctacgcgccgccttcctgcct 396 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 44 gggccctgctccacgctcctcctctcccagtccttcg 80 ||||||||||| ||||| ||||||||| | ||||||| Sbjct: 305 gggccctgctcgacgctgctcctctccaactccttcg 341
>ref|NM_188351.2| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2085 Score = 97.6 bits (49), Expect = 3e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 353 tacctcggcaacctcatcgacgacacctacaacggcgtctactacgcgaacctcacgctt 412 |||||||||||||||||||| |||||||||| ||||||||| |||| ||||||||||| Sbjct: 520 tacctcggcaacctcatcgatgacacctacactggcgtctaccacgccaacctcacgctc 579 Query: 413 cacctctacttcc 425 ||||||||||||| Sbjct: 580 cacctctacttcc 592 Score = 83.8 bits (42), Expect = 5e-13 Identities = 87/102 (85%) Strand = Plus / Plus Query: 167 ctcgagtggcgcgccgactgccacggcgtccagtacgaccgcatcttcggcgtctggctc 226 ||||||||| ||||||||||| ||| ||||| |||||||||||||||||| |||||| Sbjct: 337 ctcgagtggagcgccgactgcaggggccgccagttcgaccgcatcttcggcgtgtggctc 396 Query: 227 ggcggggcggagctcctgcgcggcagcaccgccgagccgcgc 268 ||| || |||||||||||| || ||||||| ||||||||| Sbjct: 397 tccggcgccgagctcctgcgcagctgcaccgcggagccgcgc 438 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 44 gggccctgctccacgctcctcctctcccagtccttcg 80 ||||||||||| ||||| ||||||||||| ||||||| Sbjct: 202 gggccctgctcgacgctgctcctctcccactccttcg 238
>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451C06 Length = 151773 Score = 97.6 bits (49), Expect = 3e-17 Identities = 67/73 (91%) Strand = Plus / Minus Query: 353 tacctcggcaacctcatcgacgacacctacaacggcgtctactacgcgaacctcacgctt 412 |||||||||||||||||||| |||||||||| ||||||||| |||| ||||||||||| Sbjct: 151434 tacctcggcaacctcatcgatgacacctacactggcgtctaccacgccaacctcacgctc 151375 Query: 413 cacctctacttcc 425 ||||||||||||| Sbjct: 151374 cacctctacttcc 151362 Score = 83.8 bits (42), Expect = 5e-13 Identities = 87/102 (85%) Strand = Plus / Minus Query: 167 ctcgagtggcgcgccgactgccacggcgtccagtacgaccgcatcttcggcgtctggctc 226 ||||||||| ||||||||||| ||| ||||| |||||||||||||||||| |||||| Sbjct: 151617 ctcgagtggagcgccgactgcaggggccgccagttcgaccgcatcttcggcgtgtggctc 151558 Query: 227 ggcggggcggagctcctgcgcggcagcaccgccgagccgcgc 268 ||| || |||||||||||| || ||||||| ||||||||| Sbjct: 151557 tccggcgccgagctcctgcgcagctgcaccgcggagccgcgc 151516 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 44 gggccctgctccacgctcctcctctcccagtccttcg 80 ||||||||||| ||||| ||||||||||| ||||||| Sbjct: 151752 gggccctgctcgacgctgctcctctcccactccttcg 151716
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 293 cacaaggacgtcaccaagtacgc 315 ||||||||||||||||||||||| Sbjct: 2251525 cacaaggacgtcaccaagtacgc 2251503
>emb|CR734315.2|CNS0GTDM Tetraodon nigroviridis full-length cDNA Length = 1080 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 231 gggcggagctcctgcgcggcagcaccg 257 ||||||||||||||| ||||||||||| Sbjct: 895 gggcggagctcctgctcggcagcaccg 869
>emb|CR710702.2|CNS0GBBU Tetraodon nigroviridis full-length cDNA Length = 1199 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 231 gggcggagctcctgcgcggcagcaccg 257 ||||||||||||||| ||||||||||| Sbjct: 1011 gggcggagctcctgctcggcagcaccg 985
>gb|AC132483.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0014C03, complete sequence Length = 143739 Score = 44.1 bits (22), Expect = 0.44 Identities = 46/54 (85%) Strand = Plus / Minus Query: 190 cggcgtccagtacgaccgcatcttcggcgtctggctcggcggggcggagctcct 243 ||||| ||||||||||||| || || ||||||||||| ||| || |||||||| Sbjct: 92358 cggcgaccagtacgaccgcgtcgccgccgtctggctcgacggcgccgagctcct 92305
>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21, complete sequence Length = 151267 Score = 44.1 bits (22), Expect = 0.44 Identities = 46/54 (85%) Strand = Plus / Minus Query: 190 cggcgtccagtacgaccgcatcttcggcgtctggctcggcggggcggagctcct 243 ||||| ||||||||||||| || || ||||||||||| ||| || |||||||| Sbjct: 1613 cggcgaccagtacgaccgcgtcgccgccgtctggctcgacggcgccgagctcct 1560
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.44 Identities = 46/54 (85%) Strand = Plus / Minus Query: 190 cggcgtccagtacgaccgcatcttcggcgtctggctcggcggggcggagctcct 243 ||||| ||||||||||||| || || ||||||||||| ||| || |||||||| Sbjct: 19079715 cggcgaccagtacgaccgcgtcgccgccgtctggctcgacggcgccgagctcct 19079662 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 agccgccggtcaccgccgcc 115 |||||||||||||||||||| Sbjct: 17611322 agccgccggtcaccgccgcc 17611341
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 253 caccgccgagccgcgcccgggc 274 |||||||||||||||||||||| Sbjct: 1321814 caccgccgagccgcgcccgggc 1321835
>dbj|AK105661.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-H03, full insert sequence Length = 2203 Score = 44.1 bits (22), Expect = 0.44 Identities = 46/54 (85%) Strand = Plus / Plus Query: 190 cggcgtccagtacgaccgcatcttcggcgtctggctcggcggggcggagctcct 243 ||||| ||||||||||||| || || ||||||||||| ||| || |||||||| Sbjct: 365 cggcgaccagtacgaccgcgtcgccgccgtctggctcgacggcgccgagctcct 418
>dbj|AK101858.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069P13, full insert sequence Length = 2175 Score = 44.1 bits (22), Expect = 0.44 Identities = 46/54 (85%) Strand = Plus / Plus Query: 190 cggcgtccagtacgaccgcatcttcggcgtctggctcggcggggcggagctcct 243 ||||| ||||||||||||| || || ||||||||||| ||| || |||||||| Sbjct: 331 cggcgaccagtacgaccgcgtcgccgccgtctggctcgacggcgccgagctcct 384
>dbj|AK072019.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105M15, full insert sequence Length = 2151 Score = 44.1 bits (22), Expect = 0.44 Identities = 46/54 (85%) Strand = Plus / Plus Query: 190 cggcgtccagtacgaccgcatcttcggcgtctggctcggcggggcggagctcct 243 ||||| ||||||||||||| || || ||||||||||| ||| || |||||||| Sbjct: 369 cggcgaccagtacgaccgcgtcgccgccgtctggctcgacggcgccgagctcct 422
>gb|AF043552.1|AF043552 Syncephalastrum racemosum syncephapepsin (SPSR) mRNA, complete cds Length = 1378 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 208 catcttcggcgtctggctcggc 229 |||||||||||||||||||||| Sbjct: 729 catcttcggcgtctggctcggc 750
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 210 tcttcggcgtctggctcggcg 230 ||||||||||||||||||||| Sbjct: 2574815 tcttcggcgtctggctcggcg 2574835
>ref|XM_960508.1| Neurospora crassa OR74A hypothetical protein (NCU02919.1) partial mRNA Length = 591 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 tgcgcggcagcaccgccgagc 263 ||||||||||||||||||||| Sbjct: 155 tgcgcggcagcaccgccgagc 135
>ref|XM_330106.1| Neurospora crassa OR74A hypothetical protein (NCU02919.1) partial mRNA Length = 591 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 tgcgcggcagcaccgccgagc 263 ||||||||||||||||||||| Sbjct: 155 tgcgcggcagcaccgccgagc 135
>gb|AC133218.3| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0549G05, complete sequence Length = 147182 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 245 cgcggcagcaccgccgagccgcgcc 269 |||||| |||||||||||||||||| Sbjct: 93159 cgcggccgcaccgccgagccgcgcc 93183
>emb|CR857714.1| Pongo pygmaeus mRNA; cDNA DKFZp459H161 (from clone DKFZp459H161) Length = 1738 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 cgctcctcctctcccagtcct 77 ||||||||||||||||||||| Sbjct: 33 cgctcctcctctcccagtcct 53
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 256 cgccgagccgcgcccgggcggcgtc 280 ||||||||||| ||||||||||||| Sbjct: 245208 cgccgagccgctcccgggcggcgtc 245232
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 245 cgcggcagcaccgccgagccgcgcc 269 |||||| |||||||||||||||||| Sbjct: 20971547 cgcggccgcaccgccgagccgcgcc 20971571
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 245 cgcggcagcaccgccgagccgcgcc 269 |||||| |||||||||||||||||| Sbjct: 21281782 cgcggccgcaccgccgagccgcgcc 21281806
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 gccgccggtcaccgccgcct 116 |||||||||||||||||||| Sbjct: 1932861 gccgccggtcaccgccgcct 1932880
>gb|AE017137.1| Yersinia pestis biovar Medievalis str. 91001 section 11 of 16 of the complete genome Length = 291817 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 gcgcgggggacgtctcgctggctg 164 ||||||| |||||||||||||||| Sbjct: 151243 gcgcgggtgacgtctcgctggctg 151266
>gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0092N12, complete sequence Length = 109198 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 ccgccgcctactcgccgccgtcct 131 ||||| |||||||||||||||||| Sbjct: 92095 ccgccccctactcgccgccgtcct 92072
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07, complete sequence Length = 159932 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 agccgccggtcaccgccgcc 115 |||||||||||||||||||| Sbjct: 141127 agccgccggtcaccgccgcc 141146
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 gcgcgggggacgtctcgctggctg 164 ||||||| |||||||||||||||| Sbjct: 1494528 gcgcgggtgacgtctcgctggctg 1494505
>gb|AY303372.1| Tenebrio molitor sodium/potassium ATPase alpha subunit mRNA, partial cds Length = 1260 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 cggcgtccagtacgaccgca 209 |||||||||||||||||||| Sbjct: 45 cggcgtccagtacgaccgca 64
>ref|XM_385501.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05325.1) partial mRNA Length = 3153 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 gcctactcgccgccgtcctg 132 |||||||||||||||||||| Sbjct: 27 gcctactcgccgccgtcctg 46
>emb|CR685860.2|CNS0FS5S Tetraodon nigroviridis full-length cDNA Length = 1512 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ccgcctactcgccgccgtcc 130 |||||||||||||||||||| Sbjct: 1010 ccgcctactcgccgccgtcc 991
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cagcaccgccgagccgcgcc 269 |||||||||||||||||||| Sbjct: 620348 cagcaccgccgagccgcgcc 620329
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 ccgccgcctactcgccgccgtcct 131 ||||| |||||||||||||||||| Sbjct: 910459 ccgccccctactcgccgccgtcct 910482
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ctcgccgccgtcctgcctga 137 |||||||||||||||||||| Sbjct: 514864 ctcgccgccgtcctgcctga 514845
>emb|AJ414154.1| Yersinia pestis strain CO92 complete genome; segment 14/20 Length = 204050 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 gcgcgggggacgtctcgctggctg 164 ||||||| |||||||||||||||| Sbjct: 54517 gcgcgggtgacgtctcgctggctg 54540
>gb|AC098694.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1014H12, complete sequence Length = 129420 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 ccgccgcctactcgccgccgtcct 131 ||||| |||||||||||||||||| Sbjct: 25723 ccgccccctactcgccgccgtcct 25700
>gb|CP000137.1| Rhizobium etli CFN 42 plasmid p42e, complete sequence Length = 505334 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 gccgcgcccgggcggcgtca 281 |||||||||||||||||||| Sbjct: 303678 gccgcgcccgggcggcgtca 303697
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 ccgccgagccgcgcccgggcggcg 278 |||||| ||||||||||||||||| Sbjct: 3498942 ccgccgtgccgcgcccgggcggcg 3498919
>gb|DQ399653.1| Nonomuraea longicatena K-252a biosynthesis gene cluster, complete sequence Length = 20300 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ccggccgctgcacccgccgc 32 |||||||||||||||||||| Sbjct: 14170 ccggccgctgcacccgccgc 14151
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 catcgacgacacctacaacg 386 |||||||||||||||||||| Sbjct: 2620684 catcgacgacacctacaacg 2620665
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 gggcggagctcctgcgcggc 250 |||||||||||||||||||| Sbjct: 24241699 gggcggagctcctgcgcggc 24241718
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 ccgccgcctactcgccgccgtcct 131 ||||| |||||||||||||||||| Sbjct: 910459 ccgccccctactcgccgccgtcct 910482
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aggtcaaccggccgctgcac 25 |||||||||||||||||||| Sbjct: 1710237 aggtcaaccggccgctgcac 1710218
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 443 acggcggcagcgtcgaggcccgcc 466 |||||||||||| ||||||||||| Sbjct: 1941443 acggcggcagcgccgaggcccgcc 1941420
>emb|AJ277624.1|YPE277624 Yersinia pestis yapA gene Length = 4299 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 gcgcgggggacgtctcgctggctg 164 ||||||| |||||||||||||||| Sbjct: 2087 gcgcgggtgacgtctcgctggctg 2110
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 ccgccgcctactcgccgccgtcct 131 ||||| |||||||||||||||||| Sbjct: 910456 ccgccccctactcgccgccgtcct 910479
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 gggcggagctcctgcgcggc 250 |||||||||||||||||||| Sbjct: 24169905 gggcggagctcctgcgcggc 24169924
>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132733 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 gggcggagctcctgcgcggc 250 |||||||||||||||||||| Sbjct: 126390 gggcggagctcctgcgcggc 126409
>emb|AL772427.4|CNS08CA5 Oryza sativa chromosome 12, . BAC OJ1260_B01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135793 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 gggcggagctcctgcgcggc 250 |||||||||||||||||||| Sbjct: 18473 gggcggagctcctgcgcggc 18492 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,817,025 Number of Sequences: 3902068 Number of extensions: 2817025 Number of successful extensions: 59441 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57574 Number of HSP's gapped (non-prelim): 1859 length of query: 504 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 482 effective length of database: 17,147,199,772 effective search space: 8264950290104 effective search space used: 8264950290104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
