Clone Information

BLAST Search Result

Clone Name	baet74a11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC146331.35\| Medicago truncatula clone mth2-7h18, complete se...	46	0.050
2	ref\|NM_131250.2\| Danio rerio orthodenticle homolog 1 (otx1), mRNA	44	0.20
3	emb\|BX649529.23\| Zebrafish DNA sequence from clone DKEYP-74F1 in...	44	0.20
4	gb\|AE010299.1\| Methanosarcina acetivorans str. C2A, complete genome	44	0.20
5	gb\|BC045290.1\| Danio rerio orthodenticle homolog 1, mRNA (cDNA c...	44	0.20
6	gb\|U14591.1\|DRU14591 Danio rerio orthodenticle-related protein 1...	44	0.20
7	dbj\|D26172.1\|ZEFOTX1 Zebrafish otx1 mRNA for otx homeoprotein, c...	44	0.20
8	ref\|NM_197435.1\| Oryza sativa (japonica cultivar-group) putative...	42	0.77
9	gb\|AC078894.11\| Oryza sativa (japonica cultivar-group) chromosom...	42	0.77
10	emb\|AL355531.16\| Human DNA sequence from clone RP11-300B2 on chr...	42	0.77
11	emb\|AL683801.10\| Mouse DNA sequence from clone DN-74E14 on chrom...	42	0.77
12	emb\|AL645637.18\| Mouse DNA sequence from clone RP23-388B5 on chr...	42	0.77
13	emb\|BX957307.12\| Zebrafish DNA sequence from clone CH211-117E20 ...	42	0.77
14	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	0.77
15	emb\|AJ419630.1\|OSA419630 Oryza sativa mRNA for phospholipase D (...	42	0.77
16	dbj\|AK121075.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	0.77
17	dbj\|AK108768.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	0.77
18	dbj\|AK073012.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	0.77
19	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	42	0.77
20	emb\|BX005469.9\| Mouse DNA sequence from clone RP23-218K9 on chro...	42	0.77
21	emb\|AL663090.15\| Mouse DNA sequence from clone RP23-99M13 on chr...	42	0.77
22	ref\|NM_196259.1\| Oryza sativa (japonica cultivar-group) putative...	40	3.1
23	gb\|L78833.1\| Homo sapiens BRCA1 (BRCA1) gene, complete cds; ribo...	40	3.1
24	gb\|AC152184.1\| Medicago truncatula chromosome 7 BAC clone mte1-6...	40	3.1
25	gb\|AC078839.4\| Oryza sativa (japonica cultivar-group) chromosome...	40	3.1
26	gb\|AC110567.10\| Mus musculus chromosome 5, clone RP23-304I24, co...	40	3.1
27	gb\|AC149762.2\| Bos taurus BAC CH240-123C23 (Children's Hospital...	40	3.1
28	ref\|XM_659703.1\| Aspergillus nidulans FGSC A4 hypothetical prote...	40	3.1
29	gb\|DQ190455.1\| Homo sapiens clone mck554_A neighbor of BRCA1 gen...	40	3.1
30	gb\|DQ190454.1\| Homo sapiens clone mck43_A neighbor of BRCA1 gene...	40	3.1
31	gb\|DQ190453.1\| Homo sapiens clone mck55_A neighbor of BRCA1 gene...	40	3.1
32	gb\|DQ190452.1\| Homo sapiens clone mck94_A neighbor of BRCA1 gene...	40	3.1
33	gb\|DQ190451.1\| Homo sapiens clone mck47_A neighbor of BRCA1 gene...	40	3.1
34	gb\|DQ190450.1\| Homo sapiens clone mck432_A neighbor of BRCA1 gen...	40	3.1
35	gb\|AC131786.3\| Mus musculus BAC clone RP24-397H7 from chromosome...	40	3.1
36	gb\|AY388614.1\| Homo sapiens polymerase (DNA directed), eta (POLH...	40	3.1
37	gb\|AC146649.17\| Medicago truncatula clone mth2-10d6, complete se...	40	3.1
38	gb\|AC149080.14\| Medicago truncatula clone mth2-75j5, complete se...	40	3.1
39	emb\|AL355802.13\| Human DNA sequence from clone RP3-337H4 on chro...	40	3.1
40	emb\|AJ132961.1\|HPO132961 Human poliovirus 1, complete genome. Is...	40	3.1
41	emb\|AJ132960.1\|HPO132960 Human poliovirus 1, complete genome. Is...	40	3.1
42	gb\|AC150843.16\| Medicago truncatula clone mth2-103p8, complete s...	40	3.1
43	gb\|AC130802.36\| Medicago truncatula clone mth2-28b21, complete s...	40	3.1
44	dbj\|AK143646.1\| Mus musculus 6 days neonate spleen cDNA, RIKEN f...	40	3.1
45	dbj\|AK169507.1\| Mus musculus 3 days neonate thymus cDNA, RIKEN f...	40	3.1
46	dbj\|AK041808.1\| Mus musculus 3 days neonate thymus cDNA, RIKEN f...	40	3.1
47	gb\|AF271736.1\|AF271736S1 Euglena gracilis gamma-tubulin gene, ex...	40	3.1
48	gb\|AF271739.1\|AF271738S2 Euglena gracilis gamma-tubulin gene, ex...	40	3.1
49	gb\|AF271290.1\|AF271290 Euglena gracilis gamma-tubulin mRNA, comp...	40	3.1
50	gb\|AF271289.1\|AF271289 Euglena gracilis gamma-tubulin mRNA, comp...	40	3.1
51	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	3.1
52	gb\|AC079988.6\| Homo sapiens BAC clone RP11-795C1 from 2, complet...	40	3.1
53	gb\|AC153655.4\| Mus musculus BAC clone RP23-451K20 from chromosom...	40	3.1
54	gb\|AC135721.4\| Homo sapiens, clone CTD-3199J23, complete sequence	40	3.1
55	dbj\|AP005619.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	3.1
56	dbj\|AP005527.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	3.1
57	gb\|AC155891.2\| Medicago truncatula chromosome 2 BAC clone mth2-4...	40	3.1
58	gb\|AF104899.1\|AF104899 Gadus morhua immunoglobulin light chain g...	40	3.1
59	emb\|CR962123.2\| Medicago truncatula chromosome 5 clone mth2-167a...	40	3.1
60	gb\|AC118685.10\| Mus musculus chromosome 5, clone RP23-412L2, com...	40	3.1
61	emb\|CT025842.2\| Medicago truncatula chromosome 5 clone mth2-54i2...	40	3.1
62	gb\|AC140425.3\| Mus musculus BAC clone RP24-97E12 from 1, complet...	40	3.1

>gb|AC146331.35| Medicago truncatula clone mth2-7h18, complete sequence
          Length = 138838

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 164   ctttggtgttctgttcttgctgt 186
             |||||||||||||||||||||||
Sbjct: 68636 ctttggtgttctgttcttgctgt 68614

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>ref|NM_131250.2| Danio rerio orthodenticle homolog 1 (otx1), mRNA
          Length = 2539

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 55   caccaccaccctcatcagctca 76
            ||||||||||||||||||||||
Sbjct: 1143 caccaccaccctcatcagctca 1164

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>emb|BX649529.23| Zebrafish DNA sequence from clone DKEYP-74F1 in linkage group 17,
              complete sequence
          Length = 216647

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 55     caccaccaccctcatcagctca 76
              ||||||||||||||||||||||
Sbjct: 145224 caccaccaccctcatcagctca 145245

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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 31      accccctccttcctttccagct 52
               ||||||||||||||||||||||
Sbjct: 3534767 accccctccttcctttccagct 3534746

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>gb|BC045290.1| Danio rerio orthodenticle homolog 1, mRNA (cDNA clone MGC:55275
            IMAGE:3815794), complete cds
          Length = 2539

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 55   caccaccaccctcatcagctca 76
            ||||||||||||||||||||||
Sbjct: 1143 caccaccaccctcatcagctca 1164

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>gb|U14591.1|DRU14591 Danio rerio orthodenticle-related protein 1 (zOtx1) mRNA, complete
           cds
          Length = 2083

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 55  caccaccaccctcatcagctca 76
           ||||||||||||||||||||||
Sbjct: 761 caccaccaccctcatcagctca 782

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>dbj|D26172.1|ZEFOTX1 Zebrafish otx1 mRNA for otx homeoprotein, complete cds
          Length = 1629

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 55   caccaccaccctcatcagctca 76
            ||||||||||||||||||||||
Sbjct: 1133 caccaccaccctcatcagctca 1154

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>ref|NM_197435.1| Oryza sativa (japonica cultivar-group) putative phospholipase
           (OSJNBa0096G08.23), mRNA
          Length = 3512

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  tccagcttccaccaccaccct 66
           |||||||||||||||||||||
Sbjct: 370 tccagcttccaccaccaccct 390

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>gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0096G08
              map E1363S, complete sequence
          Length = 140681

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 46     tccagcttccaccaccaccct 66
              |||||||||||||||||||||
Sbjct: 127206 tccagcttccaccaccaccct 127186

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>emb|AL355531.16| Human DNA sequence from clone RP11-300B2 on chromosome 10 Contains the 5'
              end of the MGMT gene for O-6-methylguanine-DNA
              methyltransferase, complete sequence
          Length = 213887

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 32     ccccctccttcctttccagct 52
              |||||||||||||||||||||
Sbjct: 182419 ccccctccttcctttccagct 182439

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>emb|AL683801.10| Mouse DNA sequence from clone DN-74E14 on chromosome 1 Contains the 5'
             end of the Adam23 gene for a disintegrin and
             metalloprotease domain 23 and a CpG island, complete
             sequence
          Length = 199536

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 126   gagcgcattgctgggctggga 146
             |||||||||||||||||||||
Sbjct: 84844 gagcgcattgctgggctggga 84824

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>emb|AL645637.18| Mouse DNA sequence from clone RP23-388B5 on chromosome 1 Contains the 5'
              end of the Adam23 gene for a disintegrin and
              metalloprotease domain 23, a pleckstrin homology
              domain-containing family A (phosphoinositide binding
              specific) member 3 (Plekha3) pseudogene, a px19-like
              protein (PX19) pseudogene and a CpG island, complete
              sequence
          Length = 207629

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 126    gagcgcattgctgggctggga 146
              |||||||||||||||||||||
Sbjct: 131974 gagcgcattgctgggctggga 131954

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>emb|BX957307.12| Zebrafish DNA sequence from clone CH211-117E20 in linkage group 6,
           complete sequence
          Length = 171645

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 61  caccctcatcagctcacttcc 81
           |||||||||||||||||||||
Sbjct: 565 caccctcatcagctcacttcc 545

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 46       tccagcttccaccaccaccct 66
                |||||||||||||||||||||
Sbjct: 19866168 tccagcttccaccaccaccct 19866148



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 48       cagcttccaccaccaccctc 67
                ||||||||||||||||||||
Sbjct: 12247338 cagcttccaccaccaccctc 12247319

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>emb|AJ419630.1|OSA419630 Oryza sativa mRNA for phospholipase D (pld gene)
          Length = 3180

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  tccagcttccaccaccaccct 66
           |||||||||||||||||||||
Sbjct: 211 tccagcttccaccaccaccct 231

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>dbj|AK121075.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061O15, full
           insert sequence
          Length = 3900

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  tccagcttccaccaccaccct 66
           |||||||||||||||||||||
Sbjct: 758 tccagcttccaccaccaccct 778

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>dbj|AK108768.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H03, full
           insert sequence
          Length = 1957

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  tccagcttccaccaccaccct 66
           |||||||||||||||||||||
Sbjct: 745 tccagcttccaccaccaccct 765

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>dbj|AK073012.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150C03, full
           insert sequence
          Length = 3466

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  tccagcttccaccaccaccct 66
           |||||||||||||||||||||
Sbjct: 676 tccagcttccaccaccaccct 696

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 46       tccagcttccaccaccaccct 66
                |||||||||||||||||||||
Sbjct: 19877444 tccagcttccaccaccaccct 19877424



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 48       cagcttccaccaccaccctc 67
                ||||||||||||||||||||
Sbjct: 12254678 cagcttccaccaccaccctc 12254659

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>emb|BX005469.9| Mouse DNA sequence from clone RP23-218K9 on chromosome X, complete
            sequence
          Length = 121341

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 155  ttttgtgagctttggtgttctgttc 179
            |||| ||||||||||||||||||||
Sbjct: 6377 ttttttgagctttggtgttctgttc 6353

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>emb|AL663090.15| Mouse DNA sequence from clone RP23-99M13 on chromosome 11, complete
              sequence
          Length = 165824

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 171    gttctgttcttgctgtgttgg 191
              |||||||||||||||||||||
Sbjct: 102942 gttctgttcttgctgtgttgg 102922

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>ref|NM_196259.1| Oryza sativa (japonica cultivar-group) putative phospholipid
           cytidylyltransferase (OSJNBa0094J09.9), mRNA
          Length = 2229

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  cagcttccaccaccaccctc 67
           ||||||||||||||||||||
Sbjct: 102 cagcttccaccaccaccctc 121

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>gb|L78833.1| Homo sapiens BRCA1 (BRCA1) gene, complete cds; ribosomal protein
             L21-like protein (rpL21) pseudogene, complete sequence;
             Rho7 (Rho7) and VatI (VatI) genes, complete cds; and
             unknown (ifp35) gene, exons 1 through 3 and partial cds
          Length = 117143

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    cctccttcctttccagcttc 54
             ||||||||||||||||||||
Sbjct: 86271 cctccttcctttccagcttc 86252

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>gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone mte1-61c3, complete sequence
          Length = 103090

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    atcagctcacttccggtgaa 87
             ||||||||||||||||||||
Sbjct: 75111 atcagctcacttccggtgaa 75092

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>gb|AC078839.4| Oryza sativa (japonica cultivar-group) chromosome X clone
             OSJNBa0094J09, complete sequence
          Length = 168192

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    cagcttccaccaccaccctc 67
             ||||||||||||||||||||
Sbjct: 46494 cagcttccaccaccaccctc 46475

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>gb|AC110567.10| Mus musculus chromosome 5, clone RP23-304I24, complete sequence
          Length = 188137

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   atggagaaggggacgtcggc 233
             ||||||||||||||||||||
Sbjct: 99458 atggagaaggggacgtcggc 99477

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>gb|AC149762.2| Bos taurus  BAC CH240-123C23 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 187366

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     cttccaccaccaccctcatc 70
              ||||||||||||||||||||
Sbjct: 167431 cttccaccaccaccctcatc 167412

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>ref|XM_659703.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7191.2), mRNA
          Length = 1365

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 114  ggtgaagaagaagagcgcat 133
            ||||||||||||||||||||
Sbjct: 1122 ggtgaagaagaagagcgcat 1103

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>gb|DQ190455.1| Homo sapiens clone mck554_A neighbor of BRCA1 gene 1 (NBR1) gene, partial
              cds; and hypothetical protein LOC10230 (NBR2) and breast
              cancer 1 early onset (BRCA1) genes, complete cds
          Length = 155470

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     cctccttcctttccagcttc 54
              ||||||||||||||||||||
Sbjct: 154755 cctccttcctttccagcttc 154736

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>gb|DQ190454.1| Homo sapiens clone mck43_A neighbor of BRCA1 gene 1 (NBR1) gene, partial
              cds; and hypothetical protein LOC10230 (NBR2) and breast
              cancer 1 early onset (BRCA1) genes, complete cds
          Length = 150582

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     cctccttcctttccagcttc 54
              ||||||||||||||||||||
Sbjct: 147613 cctccttcctttccagcttc 147594

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>gb|DQ190453.1| Homo sapiens clone mck55_A neighbor of BRCA1 gene 1 (NBR1) gene, partial
              cds; and hypothetical protein LOC10230 (NBR2) and breast
              cancer 1 early onset (BRCA1) genes, complete cds
          Length = 156879

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     cctccttcctttccagcttc 54
              ||||||||||||||||||||
Sbjct: 153458 cctccttcctttccagcttc 153439

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>gb|DQ190452.1| Homo sapiens clone mck94_A neighbor of BRCA1 gene 1 (NBR1) gene, partial
              cds; and hypothetical protein LOC10230 (NBR2) and breast
              cancer 1 early onset (BRCA1) genes, complete cds
          Length = 156121

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     cctccttcctttccagcttc 54
              ||||||||||||||||||||
Sbjct: 151088 cctccttcctttccagcttc 151069

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>gb|DQ190451.1| Homo sapiens clone mck47_A neighbor of BRCA1 gene 1 (NBR1) gene, partial
              cds; and hypothetical protein LOC10230 (NBR2) and breast
              cancer 1 early onset (BRCA1) genes, complete cds
          Length = 161765

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     cctccttcctttccagcttc 54
              ||||||||||||||||||||
Sbjct: 151162 cctccttcctttccagcttc 151143

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>gb|DQ190450.1| Homo sapiens clone mck432_A neighbor of BRCA1 gene 1 (NBR1) gene, partial
              cds; and hypothetical protein LOC10230 (NBR2) and breast
              cancer 1 early onset (BRCA1) genes, complete cds
          Length = 167910

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     cctccttcctttccagcttc 54
              ||||||||||||||||||||
Sbjct: 152041 cctccttcctttccagcttc 152022

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>gb|AC131786.3| Mus musculus BAC clone RP24-397H7 from chromosome 5, complete sequence
          Length = 176338

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    ttggtgttctgttcttgctg 185
              ||||||||||||||||||||
Sbjct: 173230 ttggtgttctgttcttgctg 173249

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>gb|AY388614.1| Homo sapiens polymerase (DNA directed), eta (POLH) gene, complete cds
          Length = 40997

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 30   caccccctccttcctttcca 49
            ||||||||||||||||||||
Sbjct: 9667 caccccctccttcctttcca 9686

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>gb|AC146649.17| Medicago truncatula clone mth2-10d6, complete sequence
          Length = 113049

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    atcagctcacttccggtgaa 87
             ||||||||||||||||||||
Sbjct: 77213 atcagctcacttccggtgaa 77232

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>gb|AC149080.14| Medicago truncatula clone mth2-75j5, complete sequence
          Length = 96907

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    atcagctcacttccggtgaa 87
             ||||||||||||||||||||
Sbjct: 82565 atcagctcacttccggtgaa 82546

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>emb|AL355802.13| Human DNA sequence from clone RP3-337H4 on chromosome 6 Contains the 3'
             part of a novel gene, three novel genes, the gene for RNA
             polymerase I 40 kDa subunit (RPA40) (RPA39), the gene for
             exportin 5 (KIAA1291) (XPO5), a 40S ribosomal protein S2
             (RPS2) pseudogene, the 5' part of the POLH gene for DNA
             directed polymerase eta and four CpG islands, complete
             sequence
          Length = 105935

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    caccccctccttcctttcca 49
             ||||||||||||||||||||
Sbjct: 97436 caccccctccttcctttcca 97455

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>emb|AJ132961.1|HPO132961 Human poliovirus 1, complete genome. Isolated from an immunodeficient
            patient 66 months after onset of paresis
          Length = 7441

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   cagcttccaccaccaccctc 67
            ||||||||||||||||||||
Sbjct: 1196 cagcttccaccaccaccctc 1177

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>emb|AJ132960.1|HPO132960 Human poliovirus 1, complete genome. Isolated from faeces of
            immunodeficient patient 4 days after onset of paresis
          Length = 7441

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   cagcttccaccaccaccctc 67
            ||||||||||||||||||||
Sbjct: 1196 cagcttccaccaccaccctc 1177

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>gb|AC150843.16| Medicago truncatula clone mth2-103p8, complete sequence
          Length = 125707

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    atcagctcacttccggtgaa 87
             ||||||||||||||||||||
Sbjct: 18141 atcagctcacttccggtgaa 18122

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>gb|AC130802.36| Medicago truncatula clone mth2-28b21, complete sequence
          Length = 123626

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    atcagctcacttccggtgaa 87
             ||||||||||||||||||||
Sbjct: 11745 atcagctcacttccggtgaa 11726

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>dbj|AK143646.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
           library, clone:F430005J09 product:hypothetical protein,
           full insert sequence
          Length = 4274

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 atggagaaggggacgtcggc 233
           ||||||||||||||||||||
Sbjct: 80  atggagaaggggacgtcggc 99

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>dbj|AK169507.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630056N01 product:hypothetical protein,
           full insert sequence
          Length = 3984

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 atggagaaggggacgtcggc 233
           ||||||||||||||||||||
Sbjct: 79  atggagaaggggacgtcggc 98

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>dbj|AK041808.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630039L04 product:unclassifiable, full
           insert sequence
          Length = 3976

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 atggagaaggggacgtcggc 233
           ||||||||||||||||||||
Sbjct: 79  atggagaaggggacgtcggc 98

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>gb|AF271736.1|AF271736S1 Euglena gracilis gamma-tubulin gene, exons 1-14 sequence
          Length = 20400

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    cagcttccaccaccaccctc 67
             ||||||||||||||||||||
Sbjct: 17235 cagcttccaccaccaccctc 17254

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>gb|AF271739.1|AF271738S2 Euglena gracilis gamma-tubulin gene, exons 2-17, complete cds
          Length = 21040

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    cagcttccaccaccaccctc 67
             ||||||||||||||||||||
Sbjct: 14528 cagcttccaccaccaccctc 14547

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>gb|AF271290.1|AF271290 Euglena gracilis gamma-tubulin mRNA, complete cds
          Length = 1542

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  cagcttccaccaccaccctc 67
           ||||||||||||||||||||
Sbjct: 749 cagcttccaccaccaccctc 768

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>gb|AF271289.1|AF271289 Euglena gracilis gamma-tubulin mRNA, complete cds
          Length = 1542

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  cagcttccaccaccaccctc 67
           ||||||||||||||||||||
Sbjct: 749 cagcttccaccaccaccctc 768

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 129     cgcattgctgggctgggagc 148
               ||||||||||||||||||||
Sbjct: 8258389 cgcattgctgggctgggagc 8258370

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>gb|AC079988.6| Homo sapiens BAC clone RP11-795C1 from 2, complete sequence
          Length = 211305

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   ttgctgggctgggagctgct 152
             ||||||||||||||||||||
Sbjct: 62615 ttgctgggctgggagctgct 62634

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>gb|AC153655.4| Mus musculus BAC clone RP23-451K20 from chromosome 1, complete sequence
          Length = 167208

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     ccccctccttcctttccagc 51
              ||||||||||||||||||||
Sbjct: 119600 ccccctccttcctttccagc 119619

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>gb|AC135721.4| Homo sapiens, clone CTD-3199J23, complete sequence
          Length = 150472

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     cctccttcctttccagcttc 54
              ||||||||||||||||||||
Sbjct: 116951 cctccttcctttccagcttc 116932

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>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0624H09
          Length = 158719

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    cgcattgctgggctgggagc 148
              ||||||||||||||||||||
Sbjct: 150752 cgcattgctgggctgggagc 150733

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>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0603C10
          Length = 187620

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   cgcattgctgggctgggagc 148
             ||||||||||||||||||||
Sbjct: 51894 cgcattgctgggctgggagc 51875

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>gb|AC155891.2| Medicago truncatula chromosome 2 BAC clone mth2-4g10, complete sequence
          Length = 148303

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     atcagctcacttccggtgaa 87
              ||||||||||||||||||||
Sbjct: 140487 atcagctcacttccggtgaa 140468

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>gb|AF104899.1|AF104899 Gadus morhua immunoglobulin light chain gCL5 gene cluster, partial
            sequence
          Length = 14976

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 14   cctctccacaccggaccacc 33
            ||||||||||||||||||||
Sbjct: 9753 cctctccacaccggaccacc 9734

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>emb|CR962123.2| Medicago truncatula chromosome 5 clone mth2-167a19, COMPLETE SEQUENCE
          Length = 128818

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    atcagctcacttccggtgaa 87
             ||||||||||||||||||||
Sbjct: 13315 atcagctcacttccggtgaa 13334

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>gb|AC118685.10| Mus musculus chromosome 5, clone RP23-412L2, complete sequence
          Length = 200341

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   ttggtgttctgttcttgctg 185
             ||||||||||||||||||||
Sbjct: 37718 ttggtgttctgttcttgctg 37737

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>emb|CT025842.2| Medicago truncatula chromosome 5 clone mth2-54i22, COMPLETE SEQUENCE
          Length = 111922

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    atcagctcacttccggtgaa 87
             ||||||||||||||||||||
Sbjct: 67754 atcagctcacttccggtgaa 67735

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>gb|AC140425.3| Mus musculus BAC clone RP24-97E12 from 1, complete sequence
          Length = 187415

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    ccccctccttcctttccagc 51
             ||||||||||||||||||||
Sbjct: 41710 ccccctccttcctttccagc 41729


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,018,585
Number of Sequences: 3902068
Number of extensions: 4018585
Number of successful extensions: 79327
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79077
Number of HSP's gapped (non-prelim): 250
length of query: 238
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 216
effective length of database: 17,147,199,772
effective search space: 3703795150752
effective search space used: 3703795150752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result