>CG1_HUMAN (Q13495) CG1 protein (F18)|
          Length = 701

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 26/115 (22%), Positives = 43/115 (37%)
 Frame = -2

Query: 468 SGMPSSLTRYAGSGFRPLSKIPHCCPPWESGPCLSPSVADHPKRPAKHHWLGQPLPDQLP 289
           S  P +   +     +PLS         E GP   PS+    ++P+  H+L QP P Q  
Sbjct: 455 SSSPGATEPFTFGNTKPLSHFVS-----EPGPQKMPSMPTTSRQPSLLHYLQQPTPTQAS 509

Query: 288 NTTQAHQTALLSFLQDLARTVRQIPTRYAPVRHFVLNYSDSSKRRPLGQSRSARP 124
           + T +        LQ   +  +Q P   + +   ++      +R     S  A P
Sbjct: 510 SATASSTATATLQLQQQQQQQQQQPDHSSFLLQQMMQQPQRFQRSVASDSMPALP 564

>NU5M_HUMAN (P03915) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 603

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = -3

Query: 383 SPGRVSVPVWLIIRKDQLSIIGLVSLYLTNYLILRRLIKQRF*AFFRIWPELFGRFPRVT 204
           SP + ++P++L +    ++ +GL++    NYL  +  +K     F+  +  + G +P +T
Sbjct: 476 SPFQTTIPLYLKLTALAVTFLGLLTALDLNYLTNKLKMKSPLCTFY--FSNMLGFYPSIT 533

Query: 203 H---PFATLFSTIPIP 165
           H   P+  L ++  +P
Sbjct: 534 HRTIPYLGLLTSQNLP 549

>IF2B_SULAC (Q4JA57) Translation initiation factor 2 beta subunit (eIF-2-beta)|
           (aIF2-beta)
          Length = 141

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 162 KRRPLGQSRSARPVVLKQGETTLARSLFSFCPAPRKQRSTCM 37
           K +  GQ      +VL+ G TT+ R+   +C   R++   CM
Sbjct: 23  KAQKSGQQNLPNLIVLQVGNTTIIRNFSEYCDRIRREDKLCM 64

>DMN_HUMAN (O15061) Desmuslin|
          Length = 1565

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 168  SSKRRPLGQSRSARPVVLKQGETTLARSLFSFCPAP 61
            S    P G SRS R V L  G++ L+R +    PAP
Sbjct: 1159 SQAASPTGASRSVRHVTLGPGQSPLSREVIFLGPAP 1194

>Y1738_CHRVO (Q7NX89) UPF0313 protein CV_1738|
          Length = 758

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
 Frame = -2

Query: 408 IPHCCPPWESGPCLSPSVADHPKRPAKHHWLGQPLPDQLPNTT-------------QAHQ 268
           +PH   P E    +  SV D P R   H    Q +P+Q    T             ++ +
Sbjct: 223 VPHGWRPDEEWQEMDSSVVDIPGRVDPHLNPYQEIPEQAAEATKGIDPSKPQVIRIESRE 282

Query: 267 TALLSFLQDLARTVRQIPTRYAPVRHFVLNYSDSSKRRPL-GQSRSARPVVLKQGE 103
             L     + A+TV +IP  Y  V H  + Y+ +S+   L     +AR +V   GE
Sbjct: 283 ERLAKRRAERAKTVIRIPA-YEAVAHDPVLYAHASRTLHLESNPGNARALVQMHGE 337

>RCO1_NEUCR (P78706) Transcriptional repressor rco-1|
          Length = 604

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
 Frame = -2

Query: 390 PWESGPCLSPSVADHP----KRPAKHHWLGQPLPDQ 295
           P+  GP  SP V  HP     R A+HH    P P Q
Sbjct: 216 PYNGGPAQSPQVPTHPTPDHTRMAQHHQPPPPPPSQ 251

>T5377_BACST (Q45620) Probable transposase for insertion sequence element IS5377|
          Length = 377

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +2

Query: 80  KRLLAKVVSPCFKTTGRALRL*PNGLRLLES 172
           KRLLA ++S C + T R+LR  P  LR+++S
Sbjct: 89  KRLLALIISKCNRQTRRSLRF-PKPLRVVDS 118

>NU5M_GORGO (P03917) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 603

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
 Frame = -3

Query: 404 PTAAPRGSPGRVSVPVWLIIRKDQLSIIGLVSLYLTNYLILRRLIKQRF*AFFRIWPELF 225
           PT+ P+     +++P++L +    ++++GL++    NYL  +  +K     F+  +  + 
Sbjct: 474 PTSVPQ-----MTIPLYLKLTALSITLLGLLTALDLNYLTNKLKMKHPPHTFY--FSNML 526

Query: 224 GRFPRVTH---PFATLFSTIPIP 165
           G +P +TH   P+  L  +  +P
Sbjct: 527 GFYPNITHRTIPYLGLLMSQNLP 549

>NPD1_THETN (Q8R9N6) NAD-dependent deacetylase 1 (EC 3.5.1.-) (Regulatory|
           protein SIR2 homolog 1)
          Length = 242

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 420 PLSKIPHCCPPWESGPCLSPSVADHPKRPAKHHWLGQPLP-DQLPNTTQAHQTA 262
           PLSKIP  CP  + G  + P V           W G+PLP D+L    +  Q A
Sbjct: 138 PLSKIPPECP--KCGSIVRPDVV----------WFGEPLPSDKLTEAMELSQRA 179

>CI090_MOUSE (Q6PFD7) Protein C9orf90 homolog|
          Length = 327

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = -2

Query: 381 SGPCLSPSVADHPKRPAKHHWLGQPLPDQLPNTTQAHQTALLSFLQDLARTV--RQIPTR 208
           SG  ++P +   P +    + LG+     LP+TT+ H  AL S     A TV   QIPT 
Sbjct: 116 SGTAIAPVLLT-PMQQRICNLLGEATIISLPSTTEIHPVALGSTATTAAATVTLTQIPTE 174

Query: 207 --YAPVRHFVLNYSDSSKRRPL 148
             Y  +   V+ Y  +    PL
Sbjct: 175 TTYHTLEEGVVEYCTAEAPPPL 196

>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RNA polymerase II subunit 1)
          Length = 1752

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 365 LRHGPDSHGGQQWGILDNGRKPDPAYRVSEEGMPL 469
           +R+GPD H G ++ I D G + D  Y      +PL
Sbjct: 398 VRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPL 432

>ATS4_MOUSE (Q8BNJ2) ADAMTS-4 precursor (EC 3.4.24.82) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 4) (ADAM-TS
           4) (ADAM-TS4) (Aggrecanase 1)
          Length = 833

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 348 HPKRPAKHHWLGQPLPDQLPNTTQAHQTALLSFLQDLARTVRQIP 214
           HP+R    HWL +  P    +T Q  +  LL+FL  LA     +P
Sbjct: 7   HPRRGLTGHWLQRFQPCLPLHTVQWRRLLLLAFLLSLAWPASPLP 51

>CSKI2_MOUSE (Q8VHK1) Caskin-2|
          Length = 1201

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = -2

Query: 459  PSSLTRYAGSGFRPLSKIPHCCPPWESGPCLSPSVADHPKRPAKHHWLGQPLP----DQL 292
            P++L +  G+G  P      C     SGP L+P +   P  P +    G   P     +L
Sbjct: 1088 PAALLKVPGAGTAPKPVSVACTQLAFSGPKLAPRLGPRPVPPPRPENTGPVCPSRAQQRL 1147

Query: 291  PNTTQAHQTALLSFLQDLARTVRQIPT 211
              T+ + + AL +  + +    R  PT
Sbjct: 1148 EQTSSSLEAALRAAEKSIGTEERDGPT 1174

>CSKI2_HUMAN (Q8WXE0) Caskin-2|
          Length = 1202

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
 Frame = -2

Query: 459  PSSLTRYAGSGFRPLSKIPHCCPPWESGPCLSPSVADHPKRPAKHHWLGQPLPDQLPNTT 280
            P++L +  G+G  P      C     SGP L+P +   P  P +    G   P Q     
Sbjct: 1089 PAALLKVPGAGTAPKPVSVACTQLAFSGPKLAPRLGPRPVPPPRPESTGTVGPGQAQQRL 1148

Query: 279  QAHQTALLSFLQDLARTV---RQIPTRYAPVRHFV 184
            +   ++L + L+   +++    Q  T  A  +H +
Sbjct: 1149 EQTSSSLAAALRAAEKSIGTKEQEGTPSASTKHIL 1183

>PDM2_DROVI (Q24705) POU domain protein 2 (didymous protein) (Pdm-2) (dPOU-28)|
           (dOct2) (miti-mere) (Fragment)
          Length = 471

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
 Frame = -2

Query: 312 QPLPDQLPNTTQAHQTALLSFLQDLA----------RTVRQIPT--RYAPVRHFVLNYSD 169
           Q  PD  PN   A Q  L + LQ LA          +  +Q+PT     P RH+    S 
Sbjct: 111 QLAPDAFPNPNLATQFLLQNSLQALAQFQALQQLKQQRDQQLPTASEQLPTRHYSTPLSK 170

Query: 168 SSKRRPLGQSRSARPVVLKQGETTLARSL 82
           S  R P   S  AR +  +Q + T   SL
Sbjct: 171 SPLRSP-SLSPVARSMEPQQAQRTPPNSL 198

>ROM1_BOVIN (P52205) Rod outer segment membrane protein 1 (ROSP1)|
          Length = 351

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 19/58 (32%), Positives = 23/58 (39%)
 Frame = -2

Query: 399 CCPPWESGPCLSPSVADHPKRPAKHHWLGQPLPDQLPNTTQAHQTALLSFLQDLARTV 226
           CC P    PCL   ++D    P     L  P    L   +Q     LL  LQ LA T+
Sbjct: 216 CCNPHSPRPCLQSQLSDPHAHP-----LFDPRQPNLNLWSQGCHEVLLGHLQGLASTL 268

>EDEM1_HUMAN (Q92611) ER degradation-enhancing alpha-mannosidase-like 1|
          Length = 657

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 413 PRFPTAAPRGSPGRVSVPVWL 351
           P  PT+ P G PG VS P WL
Sbjct: 52  PASPTSGPVGRPGGVSGPSWL 72


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,768,570
Number of Sequences: 219361
Number of extensions: 1469097
Number of successful extensions: 4199
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4199
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)