Clone Information

BLAST Search Result

Clone Name	baet72e03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloro...	122	5e-28
2	CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloropl...	60	2e-09
3	CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloropl...	58	9e-09
4	CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast...	58	9e-09
5	CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 membe...	57	2e-08
6	CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloropl...	57	2e-08
7	CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 membe...	57	2e-08
8	CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloropl...	57	3e-08
9	CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloropla...	56	3e-08
10	CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloropl...	56	3e-08
11	CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chlorop...	56	3e-08
12	CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII typ...	56	3e-08
13	CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chlorop...	56	5e-08
14	CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast...	56	5e-08
15	CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloropla...	55	6e-08
16	CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloropl...	55	6e-08
17	CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloropla...	55	6e-08
18	CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloropla...	55	8e-08
19	CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast...	55	8e-08
20	CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloropla...	55	8e-08
21	CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast...	55	1e-07
22	CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloropl...	55	1e-07
23	CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloropl...	55	1e-07
24	CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast...	55	1e-07
25	CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloropla...	55	1e-07
26	CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII typ...	55	1e-07
27	CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloropla...	55	1e-07
28	CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloropl...	55	1e-07
29	CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast...	55	1e-07
30	CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloropl...	55	1e-07
31	CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloropla...	55	1e-07
32	CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast...	54	1e-07
33	CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast...	54	1e-07
34	CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type...	54	2e-07
35	CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloropl...	54	2e-07
36	CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloropl...	54	2e-07
37	CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 membe...	54	2e-07
38	CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chlorop...	54	2e-07
39	CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloropla...	54	2e-07
40	CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloropl...	53	3e-07
41	CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chlorop...	52	5e-07
42	CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloropla...	51	1e-06
43	CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloropl...	51	1e-06
44	CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloropla...	51	1e-06
45	CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloropl...	51	1e-06
46	CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast ...	51	1e-06
47	CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloropla...	51	1e-06
48	CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type...	51	1e-06
49	CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloropla...	51	1e-06
50	CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chl...	51	1e-06
51	CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chlo...	50	2e-06
52	CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII ty...	50	2e-06
53	CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII typ...	50	2e-06
54	CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type...	49	7e-06
55	CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast...	47	3e-05
56	CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII typ...	45	8e-05
57	CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chlo...	45	8e-05
58	CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chlorop...	44	1e-04
59	CB4A_LYCES (P27524) Chlorophyll a-b binding protein CP24 10A, ch...	44	2e-04
60	CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloropla...	42	7e-04
61	CB4B_LYCES (P27525) Chlorophyll a-b binding protein CP24 10B, ch...	42	7e-04
62	CB4_SPIOL (P36494) Chlorophyll a-b binding protein CP24, chlorop...	42	7e-04
63	CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chlo...	41	0.001
64	CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein CP29.3, chlo...	39	0.006
65	CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloropla...	38	0.013
66	CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type...	38	0.013
67	CB29_CHLRE (Q93WD2) Chlorophyll a-b binding protein CP29	37	0.017
68	LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins pre...	37	0.028
69	CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloropl...	37	0.028
70	CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloropla...	33	0.24
71	CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloropla...	33	0.41
72	LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins pre...	31	1.6
73	NCKX1_RAT (Q9QZM6) Sodium/potassium/calcium exchanger 1 (Na(+)/K...	30	2.0
74	UBIE_PORGI (Q7MVR7) Menaquinone biosynthesis methyltransferase u...	30	2.7
75	NLPD_SALTI (Q56131) Lipoprotein nlpD precursor	30	2.7
76	NLPD_SALTY (P40827) Lipoprotein nlpD precursor	30	2.7
77	NLPD_SALDU (P39700) Lipoprotein nlpD precursor	30	2.7
78	INLA_LISMF (Q723K6) Internalin A precursor	29	4.5
79	PTW3C_BACSU (P39816) Putative PTS system glucosamine-specific EI...	29	5.9
80	INLA_LISMO (P25146) Internalin A precursor	28	7.7
81	GATD_AERPE (Q9Y9T8) Glutamyl-tRNA(Gln) amidotransferase subunit ...	25	9.8

>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast|
           precursor (Light-harvesting complex II protein 5)
           (LHCB5) (LHCIIc)
          Length = 280

 Score =  122 bits (305), Expect = 5e-28
 Identities = 64/114 (56%), Positives = 78/114 (68%)
 Frame = +1

Query: 82  MAALAPTKMLGTRLDFAGSSRYATAAPTAGAQKIVSLSDRFNXXXXXXXXXXXVATSSAG 261
           MA+L  ++MLGT L+F   SR  ++AP A +         F+           V+ +S  
Sbjct: 1   MASLGVSEMLGTPLNFRAVSR--SSAPLASSPSTFKTVALFSKKKPAPAKSKAVSETS-- 56

Query: 262 IDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFA 423
             DELAKWYGPDRRI+LP+GLLDRSE+PEYLNGEV GDYGYDPFGLGKKPE+FA
Sbjct: 57  --DELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFA 108

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>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type III CAB-13)
          Length = 265

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 37/97 (38%), Positives = 44/97 (45%)
 Frame = +1

Query: 148 ATAAPTAGAQKIVSLSDRFNXXXXXXXXXXXVATSSAGIDDELAKWYGPDRRIYLPNGLL 327
           A+ A TA +  +V  +               VA  SA        WYGPDR  YL     
Sbjct: 2   ASMAATASSTTVVKATPFLGQTKNANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPF-- 59

Query: 328 DRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
             ++ P YLNGE PGDYG+D  GL   PE FA  R L
Sbjct: 60  -SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRAL 95

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>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor|
           (LHCII type I CAB-M9) (LHCP)
          Length = 265

 Score = 58.2 bits (139), Expect = 9e-09
 Identities = 30/52 (57%), Positives = 32/52 (61%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR +YL  G L   E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 49  WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97

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>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 265

 Score = 58.2 bits (139), Expect = 9e-09
 Identities = 30/52 (57%), Positives = 32/52 (61%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR +YL  G L   E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 49  WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97

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>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1B) (CAB) (LHCP)
          Length = 274

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 28/52 (53%), Positives = 31/52 (59%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR +YL        E P YL GE PGDYG+D  GL   PE+FA  R L
Sbjct: 58  WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNREL 106

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>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor|
           (LHCII type I CAB-16) (LHCP)
          Length = 266

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 39/101 (38%), Positives = 45/101 (44%)
 Frame = +1

Query: 136 SSRYATAAPTAGAQKIVSLSDRFNXXXXXXXXXXXVATSSAGIDDELAKWYGPDRRIYLP 315
           +S  A ++P AG  K V LS   +              S A      + WYGPDR  YL 
Sbjct: 3   ASTTALSSPFAG--KAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLG 60

Query: 316 NGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
                  E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 61  PF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 98

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>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1A) (CAB) (LHCP)
          Length = 278

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 31/62 (50%), Positives = 35/62 (56%)
 Frame = +1

Query: 253 SAGIDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTR 432
           +A ID   + WYGPDR +YL        E P YL GE PGDYG+D  GL   PE FA  R
Sbjct: 55  AASID---SPWYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 108

Query: 433 PL 438
            L
Sbjct: 109 EL 110

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>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type II CAB-1A) (LHCP)
          Length = 278

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/62 (50%), Positives = 35/62 (56%)
 Frame = +1

Query: 253 SAGIDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTR 432
           +A ID   + WYGPDR +YL        E P YL GE PGDYG+D  GL   PE FA  R
Sbjct: 55  AASID---SPWYGPDRVMYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 108

Query: 433 PL 438
            L
Sbjct: 109 EL 110

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>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor|
           (LHCII type I CAB-E) (LHCP)
          Length = 266

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 38/101 (37%), Positives = 45/101 (44%)
 Frame = +1

Query: 136 SSRYATAAPTAGAQKIVSLSDRFNXXXXXXXXXXXVATSSAGIDDELAKWYGPDRRIYLP 315
           +S  A ++P AG  K V LS   +              + A      + WYGPDR  YL 
Sbjct: 3   ASTTALSSPFAG--KAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLG 60

Query: 316 NGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
                  E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 61  PF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 98

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>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor|
           (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 38/101 (37%), Positives = 45/101 (44%)
 Frame = +1

Query: 136 SSRYATAAPTAGAQKIVSLSDRFNXXXXXXXXXXXVATSSAGIDDELAKWYGPDRRIYLP 315
           +S  A ++P+  A K V LS   +              S A      + WYGPDR  YL 
Sbjct: 3   ASTMALSSPSF-AGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLG 61

Query: 316 NGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
                  E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 62  PF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 99

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>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor|
           (LHCII type I CAB-22L) (LHCP)
          Length = 267

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 34/89 (38%), Positives = 39/89 (43%)
 Frame = +1

Query: 172 AQKIVSLSDRFNXXXXXXXXXXXVATSSAGIDDELAKWYGPDRRIYLPNGLLDRSEVPEY 351
           A K+V LS   +              + A      + WYGPDR  YL        E P Y
Sbjct: 14  AGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPF---SGEAPSY 70

Query: 352 LNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           L GE PGDYG+D  GL   PE FA  R L
Sbjct: 71  LTGEFPGDYGWDTAGLSADPETFAKNREL 99

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>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,|
           chloroplast precursor (CAB)
          Length = 268

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 28/52 (53%), Positives = 31/52 (59%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL       ++ P YLNGE PGDYG+D  GL   PE FA  R L
Sbjct: 50  WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRAL 98

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>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor|
           (LHCII type II CAB-151) (LHCP)
          Length = 265

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 27/52 (51%), Positives = 30/52 (57%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        ++P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 49  WYGPDRPKYLGPF---SDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97

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>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor|
           (Allergen Api g 3)
          Length = 264

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 31/64 (48%), Positives = 34/64 (53%)
 Frame = +1

Query: 247 TSSAGIDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFAS 426
           T  A + D  + WYGPDR  YL        E P YL GE PGDYG+D  GL   PE FA 
Sbjct: 38  TVKAPVSD--SPWYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAK 92

Query: 427 TRPL 438
            R L
Sbjct: 93  NREL 96

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>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor|
           (LHCII type II CAB-215) (LHCP)
          Length = 265

 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 27/52 (51%), Positives = 30/52 (57%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        ++P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 49  WYGPDRPKYLGPF---SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNREL 97

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>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor|
           (LHCII type I CAB-25) (LHCP)
          Length = 266

 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 28/52 (53%), Positives = 29/52 (55%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 50  WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 98

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>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 28/52 (53%), Positives = 29/52 (55%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 51  WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 99

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>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 265

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 29/52 (55%), Positives = 31/52 (59%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYG DR +YL  G L   E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 49  WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97

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>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 266

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 29/52 (55%), Positives = 31/52 (59%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYG DR +YL  G L   E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 50  WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 98

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>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 29/52 (55%), Positives = 31/52 (59%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYG DR +YL  G L   E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 45  WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 93

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>CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 205

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 27/52 (51%), Positives = 29/52 (55%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        + P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 48  WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96

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>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/52 (53%), Positives = 29/52 (55%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 49  WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97

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>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor|
           (LHCII type I CAB-21) (LHCP)
          Length = 265

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/52 (53%), Positives = 29/52 (55%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 49  WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97

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>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 245

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/52 (53%), Positives = 29/52 (55%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 29  WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 77

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>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 262

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/52 (53%), Positives = 29/52 (55%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 46  WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 94

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>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP) (Fragment)
          Length = 255

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/52 (53%), Positives = 29/52 (55%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 39  WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 87

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>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor|
           (LHCII type I CAB-3) (LHCP)
          Length = 263

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/52 (53%), Positives = 29/52 (55%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 47  WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 95

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>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor|
           (LHCII type I CAB-3C) (LHCP)
          Length = 267

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/52 (53%), Positives = 29/52 (55%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 51  WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 99

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>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 267

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/52 (53%), Positives = 29/52 (55%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 51  WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 99

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>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor|
           (LHCII type I CAB-50) (LHCP)
          Length = 267

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/52 (53%), Positives = 29/52 (55%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 51  WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 99

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>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 264

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/52 (53%), Positives = 29/52 (55%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 48  WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96

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>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 263

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 27/52 (51%), Positives = 29/52 (55%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        + P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 47  WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNREL 95

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>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCII type I CAB-8)
          Length = 268

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 31/101 (30%), Positives = 47/101 (46%)
 Frame = +1

Query: 136 SSRYATAAPTAGAQKIVSLSDRFNXXXXXXXXXXXVATSSAGIDDELAKWYGPDRRIYLP 315
           +S  A ++PT   + + + ++  +            + ++  +    + WYGPDR  YL 
Sbjct: 3   ASSMALSSPTLTGKPVETSANPSSQELGGARFTMRKSATTKKVASSGSPWYGPDRVKYLG 62

Query: 316 NGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
                  E P YL GE PGDYG+D  GL   PE F+  R L
Sbjct: 63  PF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNREL 100

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>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 253

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 25/53 (47%), Positives = 33/53 (62%)
 Frame = +1

Query: 280 KWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           ++YGPDR  +L  G    ++ PEYL GE PGDYG+D  GL   P+ FA  R +
Sbjct: 32  EFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREI 82

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>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast|
           precursor (LHCII type I CAB-AB80) (LHCP)
          Length = 269

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 37/103 (35%), Positives = 47/103 (45%)
 Frame = +1

Query: 130 AGSSRYATAAPTAGAQKIVSLSDRFNXXXXXXXXXXXVATSSAGIDDELAKWYGPDRRIY 309
           + SS  A ++PT  A K + L+                AT+   +    + WYGPDR  Y
Sbjct: 4   SSSSSMALSSPTL-AGKQLKLNPSSQELGAARFTMRKSATTKK-VASSGSPWYGPDRVKY 61

Query: 310 LPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           L        E P YL GE PGDYG+D  GL   PE F+  R L
Sbjct: 62  LGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNREL 101

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>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor|
           (LHCII type I CAB-48) (LHCP)
          Length = 264

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 29/52 (55%), Positives = 31/52 (59%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYG DR +YL  G L  S  P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 48  WYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNREL 96

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>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,|
           chloroplast precursor (DE Chlorophyll a-b binding
           protein type I F3) (CAB-F3) (LHCP)
          Length = 265

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 28/52 (53%), Positives = 31/52 (59%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYG DR +YL  G    S  P YL+GE PGDYG+D  GL   PE FA  R L
Sbjct: 49  WYGSDRPLYL--GPFSGSP-PSYLSGEFPGDYGWDTAGLSADPETFAKNREL 97

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>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor|
           (LHCII type I CAB-22R) (LHCP)
          Length = 267

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 33/89 (37%), Positives = 37/89 (41%)
 Frame = +1

Query: 172 AQKIVSLSDRFNXXXXXXXXXXXVATSSAGIDDELAKWYGPDRRIYLPNGLLDRSEVPEY 351
           A K V LS   +              + A      + WYGPDR  YL        E P Y
Sbjct: 14  AGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPF---SGEAPSY 70

Query: 352 LNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           L GE P DYG+D  GL   PE FA  R L
Sbjct: 71  LTGEFPSDYGWDTAGLSADPETFAKNREL 99

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>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor|
           (LHCII type I CAB-C) (LHCP)
          Length = 267

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 34/89 (38%), Positives = 38/89 (42%)
 Frame = +1

Query: 172 AQKIVSLSDRFNXXXXXXXXXXXVATSSAGIDDELAKWYGPDRRIYLPNGLLDRSEVPEY 351
           A K V LS   +              S A      + WYGP+R  YL        E P Y
Sbjct: 14  AGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPF---SGESPSY 70

Query: 352 LNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           L GE PGDYG+D  GL   PE FA  R L
Sbjct: 71  LTGEFPGDYGWDTAGLSADPETFAKNREL 99

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>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type I CAB-13) (LHCP)
          Length = 266

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 27/52 (51%), Positives = 28/52 (53%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        E P YL GE PGDYG+D  GL   P  FA  R L
Sbjct: 50  WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKL 98

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>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor|
           (LHCII type I CAB-91R) (LHCP)
          Length = 267

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 27/52 (51%), Positives = 28/52 (53%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        E P YL GE PGDYG+D   L   PE FA  R L
Sbjct: 51  WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAELSADPETFAKNREL 99

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>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor|
           (LHCII type I CAB-5) (LHCP) (Fragment)
          Length = 237

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 26/52 (50%), Positives = 28/52 (53%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYG DR  YL        + P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 21  WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNREL 69

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>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor|
           (LHCII type I CAB-37) (LHCP)
          Length = 265

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 26/52 (50%), Positives = 28/52 (53%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYG DR  YL        + P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 49  WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNREL 97

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>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCII type I CAB-4) (LHCP)
          Length = 265

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 26/52 (50%), Positives = 28/52 (53%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYG DR  YL        + P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 49  WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNREL 97

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>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor|
           (LHCII type I CAB-36) (LHCP)
          Length = 265

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 26/52 (50%), Positives = 28/52 (53%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYG DR  YL        + P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 49  WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNREL 97

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>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 269

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 30/64 (46%), Positives = 33/64 (51%)
 Frame = +1

Query: 247 TSSAGIDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFAS 426
           + SAG D     WYG DR  +L        E P YLNGE  GDYG+D  GL   PE FA 
Sbjct: 43  SKSAGSD---TIWYGADRPKFLGPF---SGETPSYLNGEFAGDYGWDTAGLSSDPETFAR 96

Query: 427 TRPL 438
            R L
Sbjct: 97  NREL 100

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>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 27/52 (51%), Positives = 28/52 (53%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYG DR  YL        E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 49  WYGSDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNREL 97

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>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 256

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 29/62 (46%), Positives = 33/62 (53%)
 Frame = +1

Query: 253 SAGIDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTR 432
           SAGI+     WYGPDR  +L       +  P YL GE PGDYG+D  GL   PE F   R
Sbjct: 34  SAGIE-----WYGPDRAKWLGPF---STNTPAYLTGEFPGDYGWDTAGLSADPETFKKYR 85

Query: 433 PL 438
            L
Sbjct: 86  EL 87

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>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 27/52 (51%), Positives = 28/52 (53%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYG DR  YL        E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 50  WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNREL 98

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>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 27/52 (51%), Positives = 28/52 (53%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYG DR  YL        E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 50  WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNREL 98

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>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast|
           precursor (CAB) (LHCP)
          Length = 266

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 26/52 (50%), Positives = 28/52 (53%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL  G       P YL GE PGDYG+D   +   PE FA  R L
Sbjct: 50  WYGPDRPKYL--GPFSEG-TPSYLTGEFPGDYGWDTAAVSADPETFAKNREL 98

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>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I|
           CAB-AB96) (LHCP) (Major 15) (Fragment)
          Length = 228

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 26/52 (50%), Positives = 28/52 (53%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           W+GPD   YL        E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 12  WHGPDGVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 60

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>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 264

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 25/52 (48%), Positives = 28/52 (53%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYG DR  +L        + P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 48  WYGADRPKFLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96

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>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 253

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 27/65 (41%), Positives = 35/65 (53%)
 Frame = +1

Query: 244 ATSSAGIDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFA 423
           A  S+G++     +YGP+R  +L  G    +  P YL GE PGDYG+D  GL   PE F 
Sbjct: 28  APKSSGVE-----FYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFK 80

Query: 424 STRPL 438
             R L
Sbjct: 81  RYREL 85

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>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCI type II CAB)
          Length = 270

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 20/41 (48%), Positives = 27/41 (65%)
 Frame = +1

Query: 292 PDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPE 414
           PDR ++ P      S  PE+L+G +PGD+G+DP GLG  PE
Sbjct: 63  PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPE 98

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>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1|
           (Chlorophyll a-b binding protein of LHCII type I) (CAB)
           (LHCP) (Fragment)
          Length = 206

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 20/34 (58%), Positives = 21/34 (61%)
 Frame = +1

Query: 337 EVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 5   EPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 38

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>CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chloroplast|
           precursor (LHCII protein 4.2) (LHCB4.2)
          Length = 287

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 22/46 (47%), Positives = 29/46 (63%)
 Frame = +1

Query: 277 AKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPE 414
           AK    DR ++ P      ++ PEYL+G + GDYG+DPFGLGK  E
Sbjct: 45  AKTVISDRPLWFPG-----AKSPEYLDGSLVGDYGFDPFGLGKPAE 85

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>CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chloroplast|
           precursor (LHCII type I CAB-AB10) (LHCP)
          Length = 268

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 20/34 (58%), Positives = 21/34 (61%)
 Frame = +1

Query: 337 EVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           E P YL GE PGDYG+D  GL   PE FA  R L
Sbjct: 68  EWPSYLTGEFPGDYGWDTAGLSAYPETFAKNREL 101

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>CB4A_LYCES (P27524) Chlorophyll a-b binding protein CP24 10A, chloroplast|
           precursor (CAB-10A) (LHCP)
          Length = 256

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +1

Query: 343 PEYLNGEVPGDYGYDPFGLGKKP 411
           PE+L+G +PGDYG+DP GLGK P
Sbjct: 68  PEWLDGSLPGDYGFDPLGLGKDP 90

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>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCI type II CAB-7)
          Length = 270

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +1

Query: 292 PDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPE 414
           PDR ++ P      S  P +L+G +PGD+G+DP GL   PE
Sbjct: 63  PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPE 98

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>CB4B_LYCES (P27525) Chlorophyll a-b binding protein CP24 10B, chloroplast|
           precursor (CAB-10B) (LHCP)
          Length = 256

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +1

Query: 343 PEYLNGEVPGDYGYDPFGLGKKP 411
           PE+L+G +PGD+G+DP GLGK P
Sbjct: 68  PEWLDGSLPGDFGFDPLGLGKDP 90

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>CB4_SPIOL (P36494) Chlorophyll a-b binding protein CP24, chloroplast|
           precursor
          Length = 261

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +1

Query: 343 PEYLNGEVPGDYGYDPFGLGKKP 411
           PE+L+G +PGD+G+DP GLGK P
Sbjct: 73  PEWLDGSLPGDFGFDPLGLGKDP 95

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>CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast|
           precursor (LHCII protein 4.1) (LHCB4.1)
          Length = 290

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = +1

Query: 295 DRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPE 414
           DR ++ P  +      P++L+G + GDYG+DPFGLGK  E
Sbjct: 54  DRPLWYPGAIS-----PDWLDGSLVGDYGFDPFGLGKPAE 88

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>CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein CP29.3, chloroplast|
           precursor (LHCII protein 4.3) (LHCB4.3)
          Length = 276

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +1

Query: 295 DRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPE 414
           DR ++ P      +  PE+L+G + GD G+DPFGLGK  E
Sbjct: 55  DRLVWFPG-----ANPPEWLDGSMIGDRGFDPFGLGKPAE 89

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>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCI type III CAB-4) (LHCP)
          Length = 251

 Score = 37.7 bits (86), Expect = 0.013
 Identities = 25/85 (29%), Positives = 37/85 (43%)
 Frame = +1

Query: 163 TAGAQKIVSLSDRFNXXXXXXXXXXXVATSSAGIDDELAKWYGPDRRIYLPNGLLDRSEV 342
           T+  + +   S R N             TSS  ++ +  +W        LP GL      
Sbjct: 17  TSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEW--------LP-GLAS---- 63

Query: 343 PEYLNGEVPGDYGYDPFGLGKKPED 417
           P+YL G + GD G+DP GL + PE+
Sbjct: 64  PDYLTGSLAGDNGFDPLGLAEDPEN 88

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>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 273

 Score = 37.7 bits (86), Expect = 0.013
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = +1

Query: 280 KWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           ++YGPD      +G   + + P    GE PGDYG+D  GL   PE F   R L
Sbjct: 56  QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYREL 104

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>CB29_CHLRE (Q93WD2) Chlorophyll a-b binding protein CP29|
          Length = 279

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +1

Query: 304 IYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPE 414
           ++LPN     +  PE+L+G +PGD G+DP GL K  E
Sbjct: 51  LWLPN-----TTRPEWLDGSLPGDRGFDPLGLSKPSE 82

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>LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins precursor|
           [Contains: LH38 protein 1; LH38 protein 2; LH38 protein
           3] (Fragment)
          Length = 530

 Score = 36.6 bits (83), Expect = 0.028
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +1

Query: 304 IYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTR 432
           ++ PN L      P +LNGE  GD G+DP GL   P+ F   R
Sbjct: 4   LWFPNTL-----APSWLNGEYYGDRGFDPAGLAADPDTFERMR 41



 Score = 34.3 bits (77), Expect = 0.14
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 295 DRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 420
           +R ++ PN +      P YL GE  GD G+DP GL   P  F
Sbjct: 370 ERELWFPNIV-----PPRYLTGEAYGDKGFDPAGLAADPVTF 406



 Score = 33.5 bits (75), Expect = 0.24
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 304 IYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTR 432
           ++ PN     +E P  L GE P D G+DP  L   P+ +A  R
Sbjct: 189 LWFPN-----AEPPALLTGEYPADRGFDPLNLAADPDVYARMR 226

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>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor|
           (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa
           protein)
          Length = 246

 Score = 36.6 bits (83), Expect = 0.028
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 343 PEYLNGEVPGDYGYDPFGLGKKP 411
           P YL+G  PGD+G+D  GLG+ P
Sbjct: 56  PSYLDGSAPGDFGFDSLGLGEVP 78

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>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 256

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 22/52 (42%), Positives = 22/52 (42%)
 Frame = +1

Query: 283 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTRPL 438
           WYGPDR  YL        E P YL GE          GL   PE FA  R L
Sbjct: 48  WYGPDRVKYLGP---FSGEAPSYLTGEF--------HGLSADPETFAKNREL 88

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>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCI type III CAB-8)
          Length = 273

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 349 YLNGEVPGDYGYDPFGL 399
           YL+G +PGD+G+DP GL
Sbjct: 65  YLDGRLPGDFGFDPLGL 81

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>LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins precursor|
           [Contains: LH35 protein 1; LH35 protein 2] (Fragment)
          Length = 331

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 334 SEVPEYLNGEVPGDYGYDPFGLGKKPEDFASTR 432
           ++ P +L GE P D G+DP  +   P  +A  R
Sbjct: 166 AQPPAHLTGEYPADRGFDPLSVAADPTVYARMR 198

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>NCKX1_RAT (Q9QZM6) Sodium/potassium/calcium exchanger 1|
           (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod
           Na-Ca+K exchanger)
          Length = 1181

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +2

Query: 272 NSPSGTALTGGSTCPTASLTGRRCRSTSTARFPETTATILLVWARSQRTS 421
           +SP+ T   G    P+ +   R    TST +  ETTAT  ++  RS+RT+
Sbjct: 177 SSPTHTREEGRMHTPSPAGAPRTISPTSTEKDSETTATYRMLEPRSERTA 226

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>UBIE_PORGI (Q7MVR7) Menaquinone biosynthesis methyltransferase ubiE (EC|
           2.1.1.-)
          Length = 245

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -2

Query: 384 VAVVSGNLAVEVLRHLRPVKEAVGQVDPPVRAVPLGE 274
           VA  +G+LA+E+ RH+  VK+  G VD  +  + +GE
Sbjct: 65  VATGTGDLAIEICRHIPSVKQVTG-VDLSLEMMRIGE 100

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>NLPD_SALTI (Q56131) Lipoprotein nlpD precursor|
          Length = 373

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 272 NSPSGTALTGGSTCPTASLTGRRCRSTSTA 361
           N P+GT +T   T PT S T     STST+
Sbjct: 219 NKPAGTVVTAPVTAPTVSTTEPNASSTSTS 248

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>NLPD_SALTY (P40827) Lipoprotein nlpD precursor|
          Length = 377

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 272 NSPSGTALTGGSTCPTASLTGRRCRSTSTA 361
           N P+GT +T   T PT S T     STST+
Sbjct: 223 NKPAGTVVTAPVTAPTVSTTEPNASSTSTS 252

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>NLPD_SALDU (P39700) Lipoprotein nlpD precursor|
          Length = 377

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 272 NSPSGTALTGGSTCPTASLTGRRCRSTSTA 361
           N P+GT +T   T PT S T     STST+
Sbjct: 223 NKPAGTVVTAPVTAPTVSTTEPNASSTSTS 252

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>INLA_LISMF (Q723K6) Internalin A precursor|
          Length = 800

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 272 NSPSGTALTGGSTCPTASLTGRRCRSTSTARFPETTATI 388
           N+P  T   G +T P+A++ G    +TST     TT+T+
Sbjct: 716 NTPPTTNNGGNTTPPSANIPGSNTSNTSTGNSASTTSTM 754

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>PTW3C_BACSU (P39816) Putative PTS system glucosamine-specific EIICBA component|
           [Includes: Glucosamine permease IIC component (PTS
           system glucosamine-specific EIIC component);
           Glucosamine-specific phosphotransferase enzyme IIB
           component (EC 2.7.1.69) (PTS
          Length = 631

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 182 IFCAPAVGAAVAYLEEPAKSSRVPSILVGAS 90
           IFC PAV  A+ +   P K   +  +++ A+
Sbjct: 252 IFCLPAVALAIIHTARPEKKKMISGVMISAA 282

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>INLA_LISMO (P25146) Internalin A precursor|
          Length = 800

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 272 NSPSGTALTGGSTCPTASLTGRRCRSTSTARFPETTATI 388
           N+P  T   G +T P+A++ G    +TST     TT+T+
Sbjct: 716 NTPPTTNNGGNTTPPSANIPGSDTSNTSTGNSASTTSTM 754

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>GATD_AERPE (Q9Y9T8) Glutamyl-tRNA(Gln) amidotransferase subunit D (EC 6.3.5.-)|
           (Glu-ADT subunit D)
          Length = 427

 Score = 24.6 bits (52), Expect(2) = 9.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 161 GAAVAYLEEPAKSSRVPSILVGASAAIAS 75
           GA V  LEEP + +     ++GA   IAS
Sbjct: 59  GALVPLLEEPLQPAEERVYIIGAGGTIAS 87



 Score = 21.9 bits (45), Expect(2) = 9.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 198 VGEGDDLLRAGSRR 157
           VGEGDD++  GS R
Sbjct: 41  VGEGDDIVVKGSLR 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,186,826
Number of Sequences: 219361
Number of extensions: 842245
Number of successful extensions: 2200
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 2100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2159
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result