ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet72d04 |
|---|---|
| Clone Library Name | barley_pub |
>ELI5_HORVU (P14895) High molecular mass early light-inducible protein HV58,| chloroplast precursor (ELIP) Length = 231 Score = 102 bits (253), Expect = 6e-22 Identities = 68/155 (43%), Positives = 68/155 (43%), Gaps = 37/155 (23%) Frame = +1 Query: 100 MATMVALSSFAVVGLXXXXXXXXXXXXXTLVVRAQTE----------------------- 210 MATMVALSSFAVVG TLVVRAQTE Sbjct: 1 MATMVALSSFAVVGRSAARSPVVAPRRRTLVVRAQTEVSLHVARTITVSVFGCLPASTIT 60 Query: 211 --------------PDMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPSVWD 348 PDMD NPSVWD Sbjct: 61 SRLDLTVNLFVYVQPDMDSAKETTSASTSPSPSQYTSPSPTTIPAAPKPVTKKANPSVWD 120 Query: 349 ALAFSGPAPERINGRLAMVGFVAALSVEAARGGGL 453 ALAFSGPAPERINGRLAMVGFVAALSVEAARGGGL Sbjct: 121 ALAFSGPAPERINGRLAMVGFVAALSVEAARGGGL 155
>ELI6_HORVU (P14896) Low molecular mass early light-inducible protein HV60,| chloroplast precursor (ELIP) Length = 167 Score = 73.9 bits (180), Expect = 2e-13 Identities = 51/120 (42%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Frame = +1 Query: 100 MATMVALSSFAVVGLXXXXXXXX--XXXXXTLVVRAQTEPDMDXXXXXXXXXXXXXXXXX 273 MATM+A+SSFA + TLVVRAQTE Sbjct: 1 MATMMAMSSFAGAAVLPRGSARSLPALGRRTLVVRAQTEGP------------------- 41 Query: 274 XXXXXXXXXXXXXXXXXXXNPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGL 453 + S+WDA+AFSGPAPERINGRLAMVGFV AL+VEA RG GL Sbjct: 42 ---------NAPPPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGL 92
>ELI9_HORVU (P14897) Low molecular mass early light-inducible protein HV90,| chloroplast precursor (ELIP) Length = 172 Score = 69.7 bits (169), Expect = 3e-12 Identities = 32/39 (82%), Positives = 35/39 (89%) Frame = +1 Query: 337 SVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGL 453 S+WD +AFSGPAPERINGRLAMVGFV AL+VEA RG GL Sbjct: 59 SIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGL 97
>ELI_PEA (P11432) Early light-induced protein, chloroplast precursor (ELIP)| Length = 196 Score = 60.8 bits (146), Expect = 1e-09 Identities = 28/36 (77%), Positives = 32/36 (88%) Frame = +1 Query: 346 DALAFSGPAPERINGRLAMVGFVAALSVEAARGGGL 453 D +AFSGPAPERINGRLAM+GFVAA+ VE A+G GL Sbjct: 89 DLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGL 124
>DS22_CRAPL (Q01931) Desiccation stress protein DSP-22, chloroplast precursor| Length = 199 Score = 46.6 bits (109), Expect = 3e-05 Identities = 22/33 (66%), Positives = 25/33 (75%) Frame = +1 Query: 346 DALAFSGPAPERINGRLAMVGFVAALSVEAARG 444 D +F G APERINGR AM+GFVAA+ VE A G Sbjct: 90 DLFSFDGLAPERINGRSAMIGFVAAVGVELATG 122
>CBR_DUNBA (P27516) Carotene biosynthesis-related protein CBR, chloroplast| precursor Length = 172 Score = 44.7 bits (104), Expect = 1e-04 Identities = 23/37 (62%), Positives = 28/37 (75%) Frame = +1 Query: 334 PSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARG 444 P+V + + FSG APE INGRLAM+GFVAAL E + G Sbjct: 65 PTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTG 100 Score = 30.4 bits (67), Expect = 2.2 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +1 Query: 346 DALAFSGPAPERINGRLAMVGFVAALSVEAARG 444 DA+ P E NGR AM+GF A L E +G Sbjct: 136 DAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168
>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional| activator IE175) (Alpha-4 protein) Length = 1298 Score = 35.4 bits (80), Expect = 0.067 Identities = 19/54 (35%), Positives = 23/54 (42%) Frame = +3 Query: 150 RPFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQ 311 RP GGP P ++ G D + G D R P P P P P P+P Q Sbjct: 736 RPPGGGGPRPPKTKKSGAD------APGSDARAPLPAPAPPSTP-PGPEPAPAQ 782
>MOT8_MOUSE (O70324) Monocarboxylate transporter 8 (MCT 8) (X-linked| PEST-containing transporter) Length = 565 Score = 32.7 bits (73), Expect = 0.44 Identities = 17/43 (39%), Positives = 24/43 (55%) Frame = +3 Query: 171 PAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDPDP 299 P+PA +GP + +Q E V P+P PE EP P+P+P Sbjct: 4 PSPASEEAEGPCQE---ANQEYQEPVCSPVPEPEPEPEPEPEP 43
>CD2_RAT (P08921) T-cell surface antigen CD2 precursor (T-cell surface| antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (OX-34 antigen) Length = 344 Score = 32.7 bits (73), Expect = 0.44 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 7/46 (15%) Frame = +3 Query: 261 PLP------EHEPVPDPDPGSTQAHDQEG*PLGLGRARVQRP-GAG 377 PLP EH+P P P TQ H Q+G PL R + + P G+G Sbjct: 291 PLPPSHRNREHQPKKRPPPSGTQVHQQKGPPLPRPRVQPKPPCGSG 336
>CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displacement protein)| (CDP) Length = 1505 Score = 32.7 bits (73), Expect = 0.44 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Frame = +3 Query: 153 PFSSGGPAPAHPRRQGPDRA*--HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQE 326 P S G +GP A SQG+ ER + P P + EP P PG A D + Sbjct: 1331 PSSEGDSCDGVEATEGPGSADTEEPKSQGEAEREEVPRPAEQTEPPPSGTPGPDDARDDD 1390
>YCF17_CYAPA (P48367) Hypothetical 5.5 kDa protein ycf17| Length = 49 Score = 32.7 bits (73), Expect = 0.44 Identities = 18/38 (47%), Positives = 24/38 (63%) Frame = +1 Query: 337 SVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGG 450 ++W+ SG E NGRLAM+GF+AAL E+ G G Sbjct: 6 NIWNWGFTSGA--ENWNGRLAMLGFIAALLTESLTGQG 41
>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein| Length = 2480 Score = 32.0 bits (71), Expect = 0.74 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Frame = +3 Query: 195 QGPDRA*HGLSQGD---DERVDFPLPLPEHEPVPDPDPGSTQAHDQEG*PLGLGRARVQR 365 QG + +S GD +E + P+PE P P P PG H + G G +R Sbjct: 2326 QGEKKGSPQVSLGDGQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTGPSSSRASS 2385 Query: 366 PG 371 G Sbjct: 2386 WG 2387
>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2| Length = 964 Score = 32.0 bits (71), Expect = 0.74 Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 3/87 (3%) Frame = +3 Query: 141 PVGRPFSSGGPAPAHP---RRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQ 311 P RP SS GP P R R S G + + P PE +P P P + Sbjct: 99 PGPRPGSSSGPKPGRSSAARTSATPRPGLIKSSGASSQQEPPAAKPESKPTPKPGQNVPK 158 Query: 312 AHDQEG*PLGLGRARVQRPGAGAHQRP 392 H P ++ +PGA RP Sbjct: 159 PHAPAPKPKPGAPSKSPKPGARPGPRP 185
>ELOA3_HUMAN (Q8NG57) RNA polymerase II transcription factor SIII subunit A3| (Elongin A3) (EloA3) (Transcription elongation factor B polypeptide 3C) Length = 546 Score = 31.6 bits (70), Expect = 0.97 Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 4/77 (5%) Frame = +3 Query: 171 PAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEH-EP-VPDPDPGSTQAHDQEG*P-LG 341 PA + P R P R PLP+PE EP VP PG AH +G P LG Sbjct: 162 PADSGPHRDPPTRT-------------APLPMPEGPEPAVPGEQPGRGHAHAAQGGPLLG 208 Query: 342 LG-RARVQRPGAGAHQR 389 G + + Q G+H + Sbjct: 209 QGCQGQPQGEAVGSHSK 225
>CD2_HORSE (P37998) T-cell surface antigen CD2 precursor| Length = 347 Score = 31.2 bits (69), Expect = 1.3 Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 8/84 (9%) Frame = +3 Query: 153 PFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLP-------EHEPVPDPDPGSTQ 311 P +S P P R Q P G +V PLP + + P P PG TQ Sbjct: 272 PAASQPPPPPSHRPQAP---------GHRPQVPGHRPLPPGHRVQHQQQKRPAPTPG-TQ 321 Query: 312 AHDQEG*PLGLGRARVQ-RPGAGA 380 AH Q+G P L R RVQ +P GA Sbjct: 322 AHQQKGPP--LPRPRVQPKPPRGA 343
>ARI2_DROME (O76924) Protein ariadne-2 (Ari-2)| Length = 509 Score = 30.4 bits (67), Expect = 2.2 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -3 Query: 446 PPRAASTDSAATKPTMASRPLMRSGAGPLNASASQT 339 PP A TD+A+T AS L+R G+ +AS T Sbjct: 110 PPSVAVTDTASTSAAAASAQLLRLGSSGYKTTASAT 145
>CT055_HUMAN (Q9BQ89) Protein C20orf55| Length = 295 Score = 30.4 bits (67), Expect = 2.2 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = +3 Query: 147 GRPFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDF-PLPLPEHEPVPDPDPGSTQAHDQ 323 GR +G P PA P R P S RVD PLP P P P P + + + Sbjct: 128 GRAEGAGRPPPATPPRPPP-------STSAVRRVDVRPLPASPARPCPSPGPAAASSPAR 180 Query: 324 EG*PLGLGRAR 356 P GL R++ Sbjct: 181 ---PPGLQRSK 188
>EFS_HUMAN (O43281) Embryonal Fyn-associated substrate (HEFS)| Length = 561 Score = 30.4 bits (67), Expect = 2.2 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +3 Query: 219 GLSQGDDERV-DFPLPLPEHEPVPDPDPGSTQAHDQE 326 G G DE + D PL PE P P+P PG+ +HDQ+ Sbjct: 243 GEGGGTDEGIYDVPLLGPEAPPSPEP-PGALASHDQD 278
>YCF17_PORPU (P51355) Hypothetical 5.5 kDa protein ycf17 (ORF48)| Length = 48 Score = 30.4 bits (67), Expect = 2.2 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +1 Query: 376 ERINGRLAMVGFVAALSVEAARGGGL 453 E NGR AM+GF+A + +E G GL Sbjct: 15 ETWNGRFAMIGFMAVIFIELVTGKGL 40
>CLFB_STAAN (Q7A382) Clumping factor B precursor (Fibrinogen-binding protein B)| (Fibrinogen receptor B) Length = 877 Score = 30.0 bits (66), Expect = 2.8 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGSTQAHD 320 P P PE EP PDPDP S D Sbjct: 570 PSPDPEPEPSPDPDPDSDSDSD 591
>CLFB_STAAM (Q99R07) Clumping factor B precursor (Fibrinogen-binding protein B)| (Fibrinogen receptor B) Length = 877 Score = 30.0 bits (66), Expect = 2.8 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGSTQAHD 320 P P PE EP PDPDP S D Sbjct: 570 PSPDPEPEPSPDPDPDSDSDSD 591
>DBP_RAT (P16443) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) (D site albumin promoter-binding protein 1) Length = 325 Score = 30.0 bits (66), Expect = 2.8 Identities = 16/44 (36%), Positives = 18/44 (40%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGSTQAHDQEG*PLGLGRARVQRPGAGAHQ 386 P P P P P P PGS + P G AR AG H+ Sbjct: 140 PAPSPARTPAPSPGPGSCSSSSPRSSP-GHAPARATLGAAGGHR 182
>DBP_MOUSE (Q60925) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) Length = 325 Score = 30.0 bits (66), Expect = 2.8 Identities = 16/44 (36%), Positives = 18/44 (40%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGSTQAHDQEG*PLGLGRARVQRPGAGAHQ 386 P P P P P P PGS + P G AR AG H+ Sbjct: 140 PAPSPARTPAPSPGPGSCSSSSPRSSP-GHAPARATLGAAGGHR 182
>CLFB_STAAU (O86476) Clumping factor B precursor (Fibrinogen-binding protein B)| (Fibrinogen receptor B) Length = 913 Score = 30.0 bits (66), Expect = 2.8 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGSTQAHD 320 P P PE EP PDPDP S D Sbjct: 570 PSPDPEPEPSPDPDPDSDSDSD 591
>CLFB_STAAC (Q5HCR7) Clumping factor B precursor (Fibrinogen-binding protein B)| (Fibrinogen receptor B) Length = 913 Score = 30.0 bits (66), Expect = 2.8 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGSTQAHD 320 P P PE EP PDPDP S D Sbjct: 570 PSPDPEPEPSPDPDPDSDSDSD 591
>ETV5_HUMAN (P41161) ETS translocation variant 5 (Ets-related protein ERM)| Length = 510 Score = 30.0 bits (66), Expect = 2.8 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +3 Query: 153 PFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDP 293 P S PA + GP A H L + ++ F +P P H+P+ P Sbjct: 158 PTSGHAPAAGPVQGVGPAPAPHSLPEPGPQQQTFAVPRPPHQPLQMP 204
>CLFB_STAAW (Q8NUL0) Clumping factor B precursor (Fibrinogen-binding protein B)| (Fibrinogen receptor B) Length = 907 Score = 29.6 bits (65), Expect = 3.7 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGSTQAHD 320 P P P+ EP PDPDP S D Sbjct: 570 PEPTPDPEPSPDPDPDSDSDSD 591 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/18 (66%), Positives = 12/18 (66%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGST 308 P P PE EP PDPDP T Sbjct: 556 PSPDPEPEPSPDPDPEPT 573
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 29.6 bits (65), Expect = 3.7 Identities = 32/94 (34%), Positives = 35/94 (37%), Gaps = 14/94 (14%) Frame = +3 Query: 141 PVGRPFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPD--PDPGSTQA 314 P G P G PAP P + P A + S G ER P P P P P P PG Sbjct: 183 PGGMPRPMGKPAPK-PGARAPRVANNPFSTGGGER---PAPRPGGGPRPGGGPRPGGGPR 238 Query: 315 HDQEG*PLGL------------GRARVQRPGAGA 380 +G P G G QR GAGA Sbjct: 239 PQGQGRPGGQRDGQRDGQRDGQGNRGGQRQGAGA 272
>DNAJ_PROMM (Q7V9C8) Chaperone protein dnaJ| Length = 378 Score = 29.6 bits (65), Expect = 3.7 Identities = 21/53 (39%), Positives = 25/53 (47%) Frame = +3 Query: 102 GDHGGFELLRRCWPVGRPFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDFPL 260 GD GGF L + G +GG A PRR+GP QGDD R D + Sbjct: 81 GDMGGFADLFETFFSGFG-GAGGSGGARPRRRGP-------QQGDDLRYDLKI 125
>CLFB_STAAS (Q6G644) Clumping factor B precursor (Fibrinogen-binding protein B)| (Fibrinogen receptor B) Length = 905 Score = 29.6 bits (65), Expect = 3.7 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGSTQAHD 320 P P P+ EP PDPDP S D Sbjct: 570 PEPTPDPEPSPDPDPDSDSDSD 591 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/18 (66%), Positives = 12/18 (66%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGST 308 P P PE EP PDPDP T Sbjct: 556 PSPDPEPEPSPDPDPEPT 573
>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6| Length = 545 Score = 29.6 bits (65), Expect = 3.7 Identities = 20/62 (32%), Positives = 25/62 (40%) Frame = +3 Query: 153 PFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQEG* 332 P GGP P P QGP R L G + P P P + +P P G D+ Sbjct: 220 PVGPGGPPPHFPGMQGPPR----LPSGPPGPLGPPGPPPPGQGLPPPLGGPPNRGDRPPP 275 Query: 333 PL 338 P+ Sbjct: 276 PV 277
>ZN358_HUMAN (Q9NW07) Zinc finger protein 358| Length = 481 Score = 29.6 bits (65), Expect = 3.7 Identities = 22/63 (34%), Positives = 26/63 (41%) Frame = +3 Query: 132 RCWPVGRPFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQ 311 R P P S P H GPD L D +D P+P P+ +PVP PDP Sbjct: 396 RSTPSPTPVESSDPKAGHDA--GPD-----LVPSPD--LD-PVPSPDPDPVPSPDPNPVS 445 Query: 312 AHD 320 D Sbjct: 446 CPD 448
>FOXC1_MOUSE (Q61572) Forkhead box protein C1 (Forkhead-related protein FKHL7)| (Forkhead-related transcription factor 3) (FREAC-3) (Transcription factor FKH-1) (Mesoderm/mesenchyme forkhead 1) (MF-1) Length = 553 Score = 29.3 bits (64), Expect = 4.8 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 4/56 (7%) Frame = +3 Query: 168 GPAPAHPRRQGPDRA*HGLSQGDDERVDFP----LPLPEHEPVPDPDPGSTQAHDQ 323 G A P+ + PD + LS G P L L EP P P P H Q Sbjct: 251 GSAATVPKIESPDSSSSSLSSGSSPPGSLPSARPLSLDAAEPAPPPQPAPPPHHSQ 306
>HEMH_SYNEL (Q8DGU6) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 388 Score = 29.3 bits (64), Expect = 4.8 Identities = 16/27 (59%), Positives = 19/27 (70%) Frame = +1 Query: 370 APERINGRLAMVGFVAALSVEAARGGG 450 A ER NGRLAM+GF+ AL +E G G Sbjct: 355 AAERWNGRLAMLGFL-ALMIELISGQG 380
>APBA2_RAT (O35431) Amyloid beta A4 precursor protein-binding family A member| 2 (Neuron-specific X11L protein) (Neuronal Munc18-1-interacting protein 2) (Mint-2) (Adapter protein X11beta) Length = 750 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +3 Query: 216 HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQE 326 H S G + ++P H P+P+ DP + HDQE Sbjct: 148 HTHSHGAENSQEYP---DSHLPIPEDDPTVLEVHDQE 181
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 29.3 bits (64), Expect = 4.8 Identities = 32/87 (36%), Positives = 38/87 (43%), Gaps = 7/87 (8%) Frame = +3 Query: 141 PVGRPFSSGGPAPAHPRRQGPDRA*HGLSQGDD---ERVDFPLPLPEH---EPVPDPDPG 302 PV P GGP P+ P GP A GL G + + + P P P+H PV D P Sbjct: 207 PVSGP-GPGGPGPSGPGGPGPGPA-PGLCPGPNVMLNQQNPPAPQPQHLPRRPVKDIPP- 263 Query: 303 STQAHDQEG*PL-GLGRARVQRPGAGA 380 Q Q G P G A V PG G+ Sbjct: 264 LMQTSIQGGIPAPGPIPAAVPGPGPGS 290
>CD2_MOUSE (P08920) T-cell surface antigen CD2 precursor (T-cell surface| antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Lymphocyte antigen Ly-37) Length = 344 Score = 29.3 bits (64), Expect = 4.8 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 7/46 (15%) Frame = +3 Query: 261 PLP------EHEPVPDPDPGSTQAHDQEG*PLGLGRARVQRP-GAG 377 PLP EH+ P P TQ H Q+G PL R + + P G+G Sbjct: 290 PLPPGHRTREHQQKKRPPPSGTQIHQQKGPPLPRPRVQPKPPCGSG 335
>MCM3A_MOUSE (Q9WUU9) 80 kda MCM3-associated protein (GANP protein)| Length = 1971 Score = 28.9 bits (63), Expect = 6.3 Identities = 26/92 (28%), Positives = 32/92 (34%), Gaps = 19/92 (20%) Frame = +3 Query: 138 WPVGRPFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPE--------------- 272 +P P S G P PA+ L QG +E + PLP Sbjct: 246 FPTASPGSLGEPFPANKP---------SLRQGCEEAISQVEPLPTLMKGLKRKEDQDRSP 296 Query: 273 ----HEPVPDPDPGSTQAHDQEG*PLGLGRAR 356 HE DPDP S H + P+ L R R Sbjct: 297 RRHCHEAAEDPDPLSRGDHPPDKRPVRLNRPR 328
>HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC| stretch-binding protein) (CSBP) Length = 463 Score = 28.9 bits (63), Expect = 6.3 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 23/100 (23%) Frame = +3 Query: 105 DHGGFELL---RRCWPVGRPFSSGG------------PAPAHPR-------RQGPDRA*H 218 D+GGF ++ RR PVG P G P P R R+GP Sbjct: 235 DYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPP 294 Query: 219 GLS-QGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQEG*P 335 G +G + PLP P P P G A+D+ G P Sbjct: 295 GRGGRGGSRARNLPLP-----PPPPPRGGDLMAYDRRGRP 329
>HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| Length = 463 Score = 28.9 bits (63), Expect = 6.3 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 23/100 (23%) Frame = +3 Query: 105 DHGGFELL---RRCWPVGRPFSSGG------------PAPAHPR-------RQGPDRA*H 218 D+GGF ++ RR PVG P G P P R R+GP Sbjct: 235 DYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPP 294 Query: 219 GLS-QGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQEG*P 335 G +G + PLP P P P G A+D+ G P Sbjct: 295 GRGGRGGSRARNLPLP-----PPPPPRGGDLMAYDRRGRP 329
>HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K| Length = 463 Score = 28.9 bits (63), Expect = 6.3 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 23/100 (23%) Frame = +3 Query: 105 DHGGFELL---RRCWPVGRPFSSGG------------PAPAHPR-------RQGPDRA*H 218 D+GGF ++ RR PVG P G P P R R+GP Sbjct: 235 DYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPP 294 Query: 219 GLS-QGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQEG*P 335 G +G + PLP P P P G A+D+ G P Sbjct: 295 GRGGRGGSRARNLPLP-----PPPPPRGGDLMAYDRRGRP 329
>HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| (Transformation up-regulated nuclear protein) (TUNP) Length = 463 Score = 28.9 bits (63), Expect = 6.3 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 23/100 (23%) Frame = +3 Query: 105 DHGGFELL---RRCWPVGRPFSSGG------------PAPAHPR-------RQGPDRA*H 218 D+GGF ++ RR PVG P G P P R R+GP Sbjct: 235 DYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPP 294 Query: 219 GLS-QGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQEG*P 335 G +G + PLP P P P G A+D+ G P Sbjct: 295 GRGGRGGSRARNLPLP-----PPPPPRGGDLMAYDRRGRP 329
>IASPP_MOUSE (Q5I1X5) RelA-associated inhibitor (Inhibitor of ASPP protein)| (Protein iASPP) (PPP1R13B-like protein) (NFkB-interacting protein 1) Length = 824 Score = 28.9 bits (63), Expect = 6.3 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = +3 Query: 165 GGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQ 323 GGP P GP+ +++G + R P P P P+P P P + +Q Sbjct: 551 GGPGPG-----GPEPELSTITEGSEARAGPPAPAPP-APIPPPAPPQSSPPEQ 597
>CT151_HUMAN (Q8NC74) Protein C20orf151| Length = 664 Score = 28.9 bits (63), Expect = 6.3 Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 2/74 (2%) Frame = +3 Query: 153 PFSSGGPAPAHPRRQGPDRA*HGLSQG--DDERVDFPLPLPEHEPVPDPDPGSTQAHDQE 326 P P P R P S G +DE PLP P +P P P P H + Sbjct: 501 PEQEEASTPMDPSRPLPGSQLSLSSPGSTEDEDTGRPLPPPHPQPPPHPQPPDLDGHPEP 560 Query: 327 G*PLGLGRARVQRP 368 +A V RP Sbjct: 561 ------SKAEVLRP 568
>GNDS_HUMAN (Q12967) Ral guanine nucleotide dissociation stimulator (RalGEF)| (RalGDS) Length = 914 Score = 28.9 bits (63), Expect = 6.3 Identities = 20/55 (36%), Positives = 25/55 (45%) Frame = +3 Query: 171 PAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQEG*P 335 PAPA +Q P+ A GL P P E EP P+ DP +Q + E P Sbjct: 309 PAPAPELQQAPEPA-VGLESA-------PAPALELEPAPEQDPAPSQTLELEPAP 355 Score = 28.5 bits (62), Expect = 8.2 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGS 305 P P PE EP P P PGS Sbjct: 287 PAPAPEPEPAPTPAPGS 303
>PAR1_TRYBB (P08469) Procyclic form-specific polypeptide B1-alpha precursor| (Procyclin B1-alpha) (PARP) Length = 143 Score = 28.5 bits (62), Expect = 8.2 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +3 Query: 144 VGRPFSSGGPAPAHPRRQGPDRA*HGLSQG-DDERVDFPLPLPEHEPVPDPDP 299 VG ++ GP + G + G G DD P P PE EP P+P+P Sbjct: 22 VGFAAAAEGPEDKGLTKGGKGKGEKGTKVGADDTNGTDPDPEPEPEPEPEPEP 74
>APBA2_MOUSE (P98084) Amyloid beta A4 precursor protein-binding family A member| 2 (Neuron-specific X11L protein) (Neuronal Munc18-1-interacting protein 2) (Mint-2) (Adapter protein X11beta) Length = 750 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +3 Query: 216 HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQE 326 H S G + ++P H P+P+ DP + HDQE Sbjct: 148 HTHSHGAENSQEYP---DGHLPIPEDDPTVLEVHDQE 181
>CD2_MACFA (Q6SZ61) T-cell surface antigen CD2 precursor| Length = 351 Score = 28.5 bits (62), Expect = 8.2 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 13/51 (25%) Frame = +3 Query: 267 PEHEPVPD------------PDPGSTQAHDQEG*PLGLGRARVQ-RPGAGA 380 P H P+P P P TQ H Q+G P L R RVQ +P GA Sbjct: 293 PSHRPLPPGHRVQHQPQKRPPAPSGTQVHQQKGPP--LPRPRVQPKPPQGA 341
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 28.5 bits (62), Expect = 8.2 Identities = 25/80 (31%), Positives = 28/80 (35%) Frame = +3 Query: 153 PFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQEG* 332 P S+G P HP HG S P P P P P PG +Q Sbjct: 275 PPSAGTPGAGHPG--------HGHSH--------PHPFP---PGGMPHPGMSQMQLAHHG 315 Query: 333 PLGLGRARVQRPGAGAHQRP 392 P GLG PG+G P Sbjct: 316 PHGLGHPHAGPPGSGGQPPP 335
>IRX1_HUMAN (P78414) Iroquois-class homeodomain protein IRX-1 (Iroquois| homeobox protein 1) (Homeodomain protein IRXA1) Length = 480 Score = 28.5 bits (62), Expect = 8.2 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Frame = +3 Query: 144 VGRPFSS--GGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQ 311 VG P ++ G PA P Q P G GD V LPE + VP PD + Q Sbjct: 394 VGAPHAAPHGPHLPAPPPPQPPVAIAPGALNGDKASVRSSPTLPERDLVPRPDSPAQQ 451
>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2| Length = 954 Score = 28.5 bits (62), Expect = 8.2 Identities = 26/97 (26%), Positives = 30/97 (30%), Gaps = 13/97 (13%) Frame = +3 Query: 141 PVGRPFSSGGPAPAHPRRQGPDRA*HGLSQGDDERV----DFPLPLPEHEPVPD------ 290 PV + G + P QGP + S+ D P P P P D Sbjct: 167 PVQHQNNRGNASAPRPHAQGPRPGNNPFSRKQGMHTPTPGDIPRPHPMARPTADNGRGGR 226 Query: 291 ---PDPGSTQAHDQEG*PLGLGRARVQRPGAGAHQRP 392 P G Q G G G RPG H RP Sbjct: 227 PGRPGQGQGQGRGFRGGRPGQGGQGGPRPGQWGHNRP 263
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/46 (36%), Positives = 19/46 (41%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGSTQAHDQEG*PLGLGRARVQRPGAGAHQRP 392 P+P P P P P PGST PLG RA P + P Sbjct: 58 PVPGPGPGPGPGPGPGSTSRRLDPKEPLGNQRAASPTPKQASATTP 103
>PROA_TRYBB (P14043) Procyclic form-specific polypeptide precursor (Procyclin)| (PARP) Length = 115 Score = 28.5 bits (62), Expect = 8.2 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +3 Query: 144 VGRPFSSGGPAPAHPRRQGPDRA*HGLSQG-DDERVDFPLPLPEHEPVPDPDP 299 VG ++ GP + G + G G DD P P PE EP P+P+P Sbjct: 22 VGFAAAAEGPEDKGLTKGGKGKGEKGTKVGADDTNGTDPDPEPEPEPEPEPEP 74
>PARC_TRYBB (Q06084) Procyclic form-specific polypeptide B-alpha precursor| (Procyclin) (PARP B-alpha) (PSSA-1) Length = 145 Score = 28.5 bits (62), Expect = 8.2 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +3 Query: 144 VGRPFSSGGPAPAHPRRQGPDRA*HGLSQG-DDERVDFPLPLPEHEPVPDPDP 299 VG ++ GP + G + G G DD P P PE EP P+P+P Sbjct: 22 VGFAAAAEGPEDKGLTKGGKGKGEKGTKVGADDTNGTDPDPEPEPEPEPEPEP 74 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,510,990 Number of Sequences: 219361 Number of extensions: 792567 Number of successful extensions: 3889 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 2901 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3626 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
