>AMY_THECU (P29750) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 605

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 19/67 (28%), Positives = 26/67 (38%)
 Frame = -1

Query: 383 GSWQQGHSATYNAPSRI*VVCKGFSPPPVGKGASRRPITAHRPDRLSPWHGPLGAQAPLT 204
           GSWQ          S    V  G    P G G   + +   + +R +PW G   A A   
Sbjct: 532 GSWQPAQGVRLRTDSGTYPVWSGAVDLPAGVGFEYKYV---KLNRTAPWSGSRAATASPP 588

Query: 203 WVGASGG 183
           W+ + GG
Sbjct: 589 WMTSGGG 595

>RTN4R_MOUSE (Q99PI8) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 415 RIRAAWGWISVDRGSKATLPLTMPRRVFKSSAKDSAHRPL-GRELRGGQSRHIGRTDL 245
           R R  W W+   RGS + +P  +P+R+     K  A   L G  +  G  R I  + L
Sbjct: 267 RARPLWAWLQKFRGSSSEVPCNLPQRLADRDLKRLAASDLEGCAVASGPFRPIQTSQL 324

>LRCH4_MOUSE (Q921G6) Leucine-rich repeats and calponin homology|
           domain-containing protein 4
          Length = 680

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = -3

Query: 456 CCDGYLHLVWVPWYESVRHGAGSQWIVAARPLCHLQCPVAYLSRLQRIQPTARWEGSFEA 277
           C  G LH+      E+ R GA    +V +RP     CP       + + P  R++G  ++
Sbjct: 247 CLKGKLHIFKYLTMEAGRRGAALGDLVPSRPPSFSPCPA------EDLFPGRRYDGGLDS 300

Query: 276 ANHGTSAG 253
             H   +G
Sbjct: 301 GFHSVDSG 308

>SMCA2_HUMAN (P51531) Probable global transcription activator SNF2L2 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA2) (SNF2-alpha)
           (SWI/SNF-related matrix associated actin dependent
           regulator of chromatin subfamily A member 2) (hBRM)
          Length = 1586

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 317 GFSPPPVGKGASRRPITAHRPDRLSPWHGPLGAQAPLTWVGASGG 183
           G  PP  G G  + P+  H    +SP   PLGA   ++   + GG
Sbjct: 98  GMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGG 142

>BETA_RHILO (Q985M5) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)|
          Length = 550

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 240 MARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAP 106
           + R + G SA +  RG+  +  SH   D DL+ F  + A  ++ P
Sbjct: 423 LTREIFGQSAFDAFRGQEISPGSHVQSDDDLDVFIRDHAESAYHP 467

>INP5E_HUMAN (Q9NRR6) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)|
           (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase)
           (Phosphatidylinositol polyphosphate 5-phosphatase type
           IV)
          Length = 644

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 137 LNASKSESKLACDACARRSPRPTLGALAPPRAR 235
           L   +  S LACD C+ RS + +   LAP R++
Sbjct: 234 LGPGRPRSPLACDDCSLRSAKSSFSLLAPIRSK 266

>RTN4R_MACFA (Q9N0E3) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 415 RIRAAWGWISVDRGSKATLPLTMPRRV 335
           R R  W W+   RGS + +P ++P+R+
Sbjct: 267 RARPLWAWLQKFRGSSSEVPCSLPQRL 293

>RTN4R_HUMAN (Q9BZR6) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 415 RIRAAWGWISVDRGSKATLPLTMPRRV 335
           R R  W W+   RGS + +P ++P+R+
Sbjct: 267 RARPLWAWLQKFRGSSSEVPCSLPQRL 293

>PRGR_MOUSE (Q00175) Progesterone receptor (PR)|
          Length = 923

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -3

Query: 237 ARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPSAMTNCVNQR 61
           A   GG S+  V      A +S ++L+  L      P  GSFAPL  +P A  +C+  R
Sbjct: 432 AAVAGGPSSAAVSP----ASSSGSALECILYKAEAPPTQGSFAPLPCKPPAAASCLLPR 486

>RTN4R_RAT (Q99M75) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 415 RIRAAWGWISVDRGSKATLPLTMPRRV 335
           R R  W W+   RGS + +P  +P+R+
Sbjct: 267 RARPLWAWLQKFRGSSSEVPCNLPQRL 293

>SRBP1_RAT (P56720) Sterol regulatory element-binding protein 1 (SREBP-1)|
           (Sterol regulatory element-binding transcription factor
           1) (Adipocyte determination- and
           differentiation-dependent factor 1) (ADD1) (Fragment)
          Length = 1024

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 28/71 (39%), Positives = 35/71 (49%)
 Frame = -3

Query: 291 GSFEAANHGTSAGPT*PMARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSF 112
           G F+A   G   G T P +    GAS+P        + +S ASL S LEAF   P   + 
Sbjct: 21  GLFDAPYAGGETGDTGPSSP---GASSPE-------SFSSPASLGSSLEAFLGGP-KVTP 69

Query: 111 APLAFQPSAMT 79
           APL+  PSA T
Sbjct: 70  APLSPPPSAPT 80

>IL17C_HUMAN (Q9P0M4) Interleukin-17C precursor (IL-17C) (Cytokine CX2)|
          Length = 197

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = -3

Query: 228 LGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPSAMTNC 73
           LG A    + RG +  QA   +L S LEA SH   H        +PSA T C
Sbjct: 44  LGQAPPHLLARGAKWGQALPVALVSSLEAASHRGRHE-------RPSATTQC 88

>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -1

Query: 359 ATYNAPSRI*VVCKGFSPPPVGKGASRRPITAHRPDRLSPWHGPL 225
           ++ N PSR+    +  S PP      +  +  HRP R   W  PL
Sbjct: 860 SSLNLPSRLPHTWRRLSEPPTRAVKPQVRLPFHRPPRAGAWRAPL 904

>PTH_NANEQ (P61235) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 115

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = -3

Query: 207 NVGRGERRAQASHASLDSDLEAFSHN 130
           ++G+G+  AQ +HASLD+ L+ + +N
Sbjct: 12  DIGKGKLCAQVAHASLDAALKVYRNN 37

>PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacemaker protein|
            Rigui) (hPER)
          Length = 1290

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 366  PLCHLQCPVAYLSRLQRIQPTARWEGSFEAANHGTSAGPT*PMARA 229
            PL + +C       L +++   R EG+  A   G+SAGP  P A A
Sbjct: 972  PLFNSRCSSPLQLNLLQLEELPRAEGAAVAGGPGSSAGPPPPSAEA 1017

>PANB_WIGBR (Q8D2A5) 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC|
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
          Length = 265

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 291 LPNGRWAESFADDLNTRRGIVSGRVALLPRSTEIQ 395
           L  G W      +LNTR   V G + L P+S  +Q
Sbjct: 113 LEGGLWVSDIIHELNTRSIPVCGHIGLTPQSINMQ 147

>VL96_IRV1 (P22856) L96 protein|
          Length = 867

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
 Frame = +3

Query: 249 SVRPMCRDWPPRSSLPNGRWAESFADDLNTRRGIVSGRVALLPRSTEIQPHAARIRTKAP 428
           SVRP      PRS  P+ R     A   +    + S   ++ P+S  ++P +  +R   P
Sbjct: 482 SVRPKSPSVRPRSKSPSVRPKSPSARPRSKSPSVRSKSPSVRPKSPSVRPKSPSVR---P 538

Query: 429 RRDEDIHR----SSRCPPPGP 479
           R      R    S R PPP P
Sbjct: 539 RSKSPSVRPKSPSVRPPPPDP 559


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,936,818
Number of Sequences: 219361
Number of extensions: 1637922
Number of successful extensions: 5258
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5249
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)