>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate
           carboxylase activase (RcaB) gene, complete cds; and
           ribulose 1,5-bisphosphate carboxylase activase  (RcaA)
           gene, alternatively spliced, complete cds
          Length = 8766

 Score =  563 bits (284), Expect = e-157
 Identities = 284/284 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcggcatcgcatctgtacctgctaaccactgcacccctctcttttatccatatcagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 atcggcatcgcatctgtacctgctaaccactgcacccctctcttttatccatatcagctc 356

                                                                       
Query: 61  catccatcactgacgatcgatctcagtccacctgcatctgtaggtgtactagtagtacgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 catccatcactgacgatcgatctcagtccacctgcatctgtaggtgtactagtagtacgc 416

                                                                       
Query: 121 cggcctaatccagctgagagctgatcgagctagcttgcatataccactgcacgtacgcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cggcctaatccagctgagagctgatcgagctagcttgcatataccactgcacgtacgcac 476

                                                                       
Query: 181 atcaaattaattagaaactactgtaattaagttatcagcagcgagaagagaacgatcgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 atcaaattaattagaaactactgtaattaagttatcagcagcgagaagagaacgatcgat 536

                                                       
Query: 241 caacaccatggcttctgctttctcgtccaccgttggagctccgg 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 caacaccatggcttctgctttctcgtccaccgttggagctccgg 580



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                          
Query: 283  ggcgtcgaccccgaccatcttcctgggcaa 312
            ||||||||||||||||||||||||||||||
Sbjct: 2801 ggcgtcgaccccgaccatcttcctgggcaa 2830

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score =  515 bits (260), Expect = e-143
 Identities = 260/260 (100%)
 Strand = Plus / Plus

                                                                       
Query: 53  atcagctccatccatcactgacgatcgatctcagtccacctgcatctgtaggtgtactag 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   atcagctccatccatcactgacgatcgatctcagtccacctgcatctgtaggtgtactag 61

                                                                       
Query: 113 tagtacgccggcctaatccagctgagagctgatcgagctagcttgcatataccactgcac 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  tagtacgccggcctaatccagctgagagctgatcgagctagcttgcatataccactgcac 121

                                                                       
Query: 173 gtacgcacatcaaattaattagaaactactgtaattaagttatcagcagcgagaagagaa 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gtacgcacatcaaattaattagaaactactgtaattaagttatcagcagcgagaagagaa 181

                                                                       
Query: 233 cgatcgatcaacaccatggcttctgctttctcgtccaccgttggagctccggcgtcgacc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cgatcgatcaacaccatggcttctgctttctcgtccaccgttggagctccggcgtcgacc 241

                               
Query: 293 ccgaccatcttcctgggcaa 312
           ||||||||||||||||||||
Sbjct: 242 ccgaccatcttcctgggcaa 261

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B
           (RcaB) mRNA, complete cds; nuclear gene for chloroplast
           product
          Length = 1525

 Score =  111 bits (56), Expect = 1e-21
 Identities = 62/64 (96%)
 Strand = Plus / Plus

                                                                       
Query: 243 acaccatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatct 302
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 21  acacgatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccacct 80

               
Query: 303 tcct 306
           ||||
Sbjct: 81  tcct 84

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase (rca) mRNA, complete cds
          Length = 1675

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 248 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 307
           |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| |||||||
Sbjct: 35  atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 94

             
Query: 308 gg 309
           ||
Sbjct: 95  gg 96

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for
           ribulose-bisphosphate carboxylase activase large isoform
           precursor protein, complete cds, clone: 13YPR038
          Length = 1558

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 248 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 307
           |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| |||||||
Sbjct: 27  atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 86

             
Query: 308 gg 309
           ||
Sbjct: 87  gg 88

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
           insert sequence
          Length = 1721

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 248 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 307
           |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| |||||||
Sbjct: 75  atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 134

             
Query: 308 gg 309
           ||
Sbjct: 135 gg 136

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
           insert sequence
          Length = 1682

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 248 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 307
           |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| |||||||
Sbjct: 63  atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 122

             
Query: 308 gg 309
           ||
Sbjct: 123 gg 124

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
           insert sequence
          Length = 1680

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 248 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 307
           |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| |||||||
Sbjct: 64  atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 123

             
Query: 308 gg 309
           ||
Sbjct: 124 gg 125

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
           insert sequence
          Length = 1691

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 248 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 307
           |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| |||||||
Sbjct: 63  atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 122

             
Query: 308 gg 309
           ||
Sbjct: 123 gg 124

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
           precursor, complete cds
          Length = 1706

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 248 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 307
           |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| |||||||
Sbjct: 68  atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 127

             
Query: 308 gg 309
           ||
Sbjct: 128 gg 129

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
           precursor, complete cds
          Length = 1623

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 248 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 307
           |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| |||||||
Sbjct: 62  atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 121

             
Query: 308 gg 309
           ||
Sbjct: 122 gg 123

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 248 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 307
           |||||| |||| ||||| |||||||| ||||||||||| || || ||||||| |||||| 
Sbjct: 80  atggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagcttcctc 139

                
Query: 308 ggcaa 312
           |||||
Sbjct: 140 ggcaa 144

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 248 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 307
           |||||| |||| ||||| |||||||| ||||||||||| || || || |||| |||||| 
Sbjct: 70  atggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagcttcctc 129

                
Query: 308 ggcaa 312
           |||||
Sbjct: 130 ggcaa 134

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                   
Query: 248    atggcttctgctttctcgtccaccgttggagctccgg 284
              |||||| |||| ||||| |||||||||||||||||||
Sbjct: 109982 atggctgctgccttctcctccaccgttggagctccgg 109946



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 248    atggcttctgctttctcgtccaccgttggagctccgg 284
              ||||||||||||||||| ||||| || ||||| ||||
Sbjct: 113920 atggcttctgctttctcctccactgtcggagccccgg 113884

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 248   atggcttctgctttctcgtccaccgttggagctccgg 284
             |||||| |||| ||||| |||||||||||||||||||
Sbjct: 31859 atggctgctgccttctcctccaccgttggagctccgg 31823



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 248   atggcttctgctttctcgtccaccgttggagctccgg 284
             ||||||||||||||||| ||||| || ||||| ||||
Sbjct: 35797 atggcttctgctttctcctccactgtcggagccccgg 35761

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 248      atggcttctgctttctcgtccaccgttggagctccgg 284
                |||||| |||| ||||| |||||||||||||||||||
Sbjct: 28305121 atggctgctgccttctcctccaccgttggagctccgg 28305085



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 248      atggcttctgctttctcgtccaccgttggagctccgg 284
                ||||||||||||||||| ||||| || ||||| ||||
Sbjct: 28309059 atggcttctgctttctcctccactgtcggagccccgg 28309023

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 248      atggcttctgctttctcgtccaccgttggagctccgg 284
                |||||| |||| ||||| |||||||||||||||||||
Sbjct: 28287570 atggctgctgccttctcctccaccgttggagctccgg 28287534



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 248      atggcttctgctttctcgtccaccgttggagctccgg 284
                ||||||||||||||||| ||||| || ||||| ||||
Sbjct: 28291508 atggcttctgctttctcctccactgtcggagccccgg 28291472

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
           precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 260 ttctcgtccaccgttggagctccggcgtcgaccccgacca 299
           ||||| |||||||| ||||||||||| || ||||||||||
Sbjct: 33  ttctcctccaccgtcggagctccggcctccaccccgacca 72

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 260 ttctcgtccaccgttggagctccggcgtcgaccccgacca 299
           ||||| |||||||| ||||||||||| || ||||||||||
Sbjct: 33  ttctcctccaccgtcggagctccggcctccaccccgacca 72

>emb|BX085195.5| Zebrafish DNA sequence from clone DKEY-226A5 in linkage group 3,
             complete sequence
          Length = 227111

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 181   atcaaattaattagaaactactgtaattaa 210
             |||||||||||||||||||| | |||||||
Sbjct: 94967 atcaaattaattagaaactattctaattaa 94996

>emb|BX248357.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
             4/8
          Length = 349535

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 161   ataccactgcacgtacgcaca 181
             |||||||||||||||||||||
Sbjct: 40071 ataccactgcacgtacgcaca 40091

>gb|AC149051.4| Mus musculus BAC clone RP24-325F10 from 8, complete sequence
          Length = 184939

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 177    gcacatcaaattaattagaaa 197
              |||||||||||||||||||||
Sbjct: 141560 gcacatcaaattaattagaaa 141580

>emb|CR388060.19| Zebrafish DNA sequence from clone DKEY-208J8 in linkage group 16,
              complete sequence
          Length = 213586

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    acatcaaattaattagaaac 198
              ||||||||||||||||||||
Sbjct: 134825 acatcaaattaattagaaac 134844

>emb|AL162412.11| Human DNA sequence from clone RP11-109D9 on chromosome 9 Contains the
             5' end of the APBA1 gene for myloid beta (A4) precursor
             protein-binding, family A, member 1 (X11), two novel
             genes, the 5' end of a novel gene possible ortholog of
             mouse RIKEN cDNA 1700028P14 gene and two CpG islands,
             complete sequence
          Length = 189277

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   cacatcaaattaattagaaa 197
             ||||||||||||||||||||
Sbjct: 60853 cacatcaaattaattagaaa 60834

>emb|BX936324.6| Zebrafish DNA sequence from clone CH211-74F16 in linkage group 3,
              complete sequence
          Length = 154312

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    atcaaattaattagaaacta 200
              ||||||||||||||||||||
Sbjct: 118154 atcaaattaattagaaacta 118135

>emb|BX511260.11| Zebrafish DNA sequence from clone CH211-121A2, complete sequence
          Length = 190733

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 188   taattagaaactactgtaattaag 211
             |||||| |||||||||||||||||
Sbjct: 63356 taattacaaactactgtaattaag 63379

>emb|BX927222.8| Zebrafish DNA sequence from clone CH211-256M12 in linkage group 16,
              complete sequence
          Length = 154714

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    acatcaaattaattagaaac 198
              ||||||||||||||||||||
Sbjct: 111012 acatcaaattaattagaaac 110993

>emb|AL732624.6| Mouse DNA sequence from clone RP23-118D1 on chromosome 4, complete
             sequence
          Length = 110038

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   cacatcaaattaattagaaa 197
             ||||||||||||||||||||
Sbjct: 30211 cacatcaaattaattagaaa 30192

>emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in linkage group 19,
              complete sequence
          Length = 180994

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 188    taattagaaactactgtaattaag 211
              |||||| |||||||||||||||||
Sbjct: 115724 taattacaaactactgtaattaag 115701

>gb|AC006566.2|AC006566 Homo sapiens chromosome 18, clone hRPK.376_P_6, complete sequence
          Length = 189199

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    aaattaattagaaactactg 203
              ||||||||||||||||||||
Sbjct: 129327 aaattaattagaaactactg 129308

>dbj|AP005900.1| Homo sapiens genomic DNA, chromosome 18p clone:RP11-931H21, complete
              sequence
          Length = 215253

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    aaattaattagaaactactg 203
              ||||||||||||||||||||
Sbjct: 187843 aaattaattagaaactactg 187862


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,518,193
Number of Sequences: 3902068
Number of extensions: 2518193
Number of successful extensions: 44655
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44591
Number of HSP's gapped (non-prelim): 64
length of query: 312
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 290
effective length of database: 17,147,199,772
effective search space: 4972687933880
effective search space used: 4972687933880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)