ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet72a03 |
|---|---|
| Clone Library Name | barley_pub |
>PROB_GLUOX (Q5FUL1) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 378 Score = 32.3 bits (72), Expect = 0.28 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +2 Query: 65 HHPSKTKDKAKMGSRYEVEVTVGAARDLKNVNWRNGDLKPYAVLWIDAGAR 217 HHP + + + + + G+AR W G L+P L IDAGAR Sbjct: 249 HHPLRRLQNGGLCTWFMAQTDAGSARK----RWIGGSLQPKGTLTIDAGAR 295
>YLZ5_CAEEL (P34418) Hypothetical protein F42H10.5| Length = 810 Score = 31.6 bits (70), Expect = 0.49 Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 1/100 (1%) Frame = +2 Query: 71 PSKTKDKAKMGSRYEVEVTVGA-ARDLKNVNWRNGDLKPYAVLWIDAGARCSTRVDLDNG 247 P+ T A + + + +T+ A + +++ WRN D K + A A ++ VD + Sbjct: 245 PTPTSSNAGLNALQQAGLTLAANGQIIQSKKWRNDDKKQKELCTKFALALATSHVDFEVV 304 Query: 248 ENPTWDDKVVVLLPPASRLQDAVLYLDIVHANAPEGVKPL 367 +NP W + V + P + Y IV++ + + ++ L Sbjct: 305 QNPLWKE-VFEMAQPKFSIPTESQYEHIVNSTSHKLIQSL 343
>WWP1_MOUSE (Q8BZZ3) NEDD4-like E3 ubiquitin-protein ligase WWP1 (EC 6.3.2.-)| (WW domain-containing protein 1) Length = 918 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/67 (23%), Positives = 36/67 (53%) Frame = +2 Query: 107 RYEVEVTVGAARDLKNVNWRNGDLKPYAVLWIDAGARCSTRVDLDNGENPTWDDKVVVLL 286 R +++VTV +A+ + NW + Y + +D + + + + NP WD++++V + Sbjct: 17 RLQLKVTVSSAKLKRKKNWFGTAI--YTEVIVDGEVKKTAKSS--SSSNPKWDEQLIVNV 72 Query: 287 PPASRLQ 307 P + L+ Sbjct: 73 TPQTTLE 79
>LRP1_HUMAN (Q07954) Low-density lipoprotein receptor-related protein 1 precursor| (LRP) (Alpha-2-macroglobulin receptor) (A2MR) (Apolipoprotein E receptor) (APOER) (CD91 antigen) Length = 4544 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%) Frame = +2 Query: 152 NVNWRNG---DLKPYAVLWIDAGARCSTRVDLDNGENPTWDDKVVVL------LPPASRL 304 +++W NG D + + W DA R+DL+ GEN + VVL + S Sbjct: 2050 SISWPNGISVDYQDGKLYWCDARTDKIERIDLETGEN-----REVVLSSNNMDMFSVSVF 2104 Query: 305 QDAVLYLDIVHAN 343 +D + + D HAN Sbjct: 2105 EDFIYWSDRTHAN 2117
>LRP1_CHICK (P98157) Low-density lipoprotein receptor-related protein 1 precursor| (LRP) (Alpha-2-macroglobulin receptor) (A2MR) Length = 4543 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%) Frame = +2 Query: 152 NVNWRNG---DLKPYAVLWIDAGARCSTRVDLDNGENPTWDDKVVVL------LPPASRL 304 +++W NG D + + W DA R+DL+ GEN + VVL + S Sbjct: 2046 SISWPNGISVDYEDGKLYWCDARTDKIERIDLETGEN-----REVVLSSDNMDMFSVSVF 2100 Query: 305 QDAVLYLDIVHAN 343 +D + + D HAN Sbjct: 2101 EDYIYWSDRTHAN 2113
>DHMA1_MYCTU (P64301) Haloalkane dehalogenase 1 (EC 3.8.1.5)| Length = 300 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = +2 Query: 170 GDLKPYAVLWIDAGARCSTRVDLDNGENPTWDDKVVVLLPPASRLQDAVLYLDIV 334 GD +P + ++D G + L +GE PTW ++PP S VL D++ Sbjct: 29 GDTQPLRMHYVDEGPGDGPPIVLLHGE-PTWSYLYRTMIPPLSAAGHRVLAPDLI 82
>DHMA1_MYCBO (P64302) Haloalkane dehalogenase 1 (EC 3.8.1.5)| Length = 300 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = +2 Query: 170 GDLKPYAVLWIDAGARCSTRVDLDNGENPTWDDKVVVLLPPASRLQDAVLYLDIV 334 GD +P + ++D G + L +GE PTW ++PP S VL D++ Sbjct: 29 GDTQPLRMHYVDEGPGDGPPIVLLHGE-PTWSYLYRTMIPPLSAAGHRVLAPDLI 82
>TOP1_HAEIN (P43012) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 868 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Frame = +2 Query: 71 PSKTKDKAK-MGSRYEVEVTVGAARDLKNVNWRNGD-LKPYAVLWIDAGARCSTRVD 235 P+K K K +GS+Y V+ +VG RDL V G+ KP + +DA + + + Sbjct: 11 PAKAKTINKYLGSQYVVKSSVGHIRDLPTVGSSTGEKAKPISTKGMDAEEKAKIKAE 67
>PLCL4_HUMAN (O75038) 1-phosphatidylinositol-4,5-bisphosphate| phosphodiesterase-like 4 (EC 3.1.4.11) (Phosphoinositide phospholipase C-like 4) (Phospholipase C-like 4) (Fragment) Length = 1182 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +2 Query: 212 ARCSTRVDLDNGENPTWDDKVVVLL 286 +R TRV DNG NPTW++ +V ++ Sbjct: 827 SREQTRVVDDNGFNPTWEETLVFMV 851
>WWP1_HUMAN (Q9H0M0) NEDD4-like E3 ubiquitin-protein ligase WWP1 (EC 6.3.2.-)| (WW domain-containing protein 1) (Atropin-1-interacting protein 5) (AIP5) Length = 922 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/67 (23%), Positives = 33/67 (49%) Frame = +2 Query: 107 RYEVEVTVGAARDLKNVNWRNGDLKPYAVLWIDAGARCSTRVDLDNGENPTWDDKVVVLL 286 R +++VTV +A+ + NW + Y + +D + + NP WD+++ V + Sbjct: 17 RLQLQVTVSSAKLKRKKNWFGTAI--YTEVVVDG--EITKTAKSSSSSNPKWDEQLTVNV 72 Query: 287 PPASRLQ 307 P + L+ Sbjct: 73 TPQTTLE 79
>Y1099_VIBCH (Q9KT06) UPF0208 membrane protein VC1099| Length = 150 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -1 Query: 174 SPLRQLTFLRSRAAPTVTSTSYREPIFALSLVLLGWWWL 58 S L Q+ F ++A P + +FA+SL L G WWL Sbjct: 54 SVLTQMVFANTQAMPQAIVVA----LFAMSLPLQGIWWL 88
>AKAP1_MOUSE (O08715) A kinase anchor protein 1, mitochondrial precursor| (Protein kinase A-anchoring protein 1) (PRKA1) (Dual-specificity A-kinase-anchoring protein 1) (D-AKAP-1) (Spermatid A-kinase anchor protein) (S-AKAP) Length = 857 Score = 28.1 bits (61), Expect = 5.4 Identities = 9/11 (81%), Positives = 9/11 (81%) Frame = -1 Query: 84 LVLLGWWWLFS 52 L LLGWWW FS Sbjct: 17 LALLGWWWFFS 27
>AKAP1_HUMAN (Q92667) A kinase anchor protein 1, mitochondrial precursor| (Protein kinase A-anchoring protein 1) (PRKA1) (A-kinase anchor protein 149 kDa) (AKAP 149) (Dual specificity A-kinase-anchoring protein 1) (D-AKAP-1) (Spermatid A-kinase anchor prot Length = 903 Score = 28.1 bits (61), Expect = 5.4 Identities = 9/11 (81%), Positives = 9/11 (81%) Frame = -1 Query: 84 LVLLGWWWLFS 52 L LLGWWW FS Sbjct: 17 LALLGWWWFFS 27
>TOP1_PASMU (Q9CN30) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 868 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +2 Query: 71 PSKTKDKAK-MGSRYEVEVTVGAARDLKNVNWRNGD 175 P+K K K +GS Y V+ +VG RDL V NG+ Sbjct: 11 PAKAKTINKYLGSNYVVKSSVGHIRDLPTVGSSNGE 46
>AKAP1_RAT (O88884) A kinase anchor protein 1, mitochondrial precursor| (Protein kinase A-anchoring protein 1) (PRKA1) (A-kinase anchor protein 121 kDa) (AKAP 121) (Dual specificity A-kinase-anchoring protein 1) (D-AKAP-1) (Spermatid A-kinase anchor protei Length = 854 Score = 28.1 bits (61), Expect = 5.4 Identities = 9/11 (81%), Positives = 9/11 (81%) Frame = -1 Query: 84 LVLLGWWWLFS 52 L LLGWWW FS Sbjct: 17 LALLGWWWFFS 27
>LRP1B_MOUSE (Q9JI18) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Frame = +2 Query: 89 KAKM-GSRYEVEVTVGAARDLKNVNWRNG---DLKPYAVLWIDAGARCSTRVDLDNGEN 253 KA++ GS + V+VG + W NG D + + W DA + R+DLD G N Sbjct: 2023 KARLDGSEKVMIVSVG-------ITWPNGISIDYEENKLYWCDARSDKIERIDLDTGAN 2074
>AGRP_PIG (Q9TU18) Agouti-related protein precursor| Length = 134 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = -1 Query: 276 TTLSSQVGFSPLSRSTRVEQRAPASIQSTA*GLRSPLRQLTFLRSRAA 133 T L +Q+G +PL R++Q +Q GL+ PL++ T R+ A Sbjct: 17 TMLGAQIGLAPLEGIGRLDQALFPELQDL--GLQPPLKRTTAERAEEA 62
>UB2E3_MOUSE (P52483) Ubiquitin-conjugating enzyme E2 E3 (EC 6.3.2.19)| (Ubiquitin-protein ligase E3) (Ubiquitin carrier protein E3) (Ubiquitin-conjugating enzyme E2-23 kDa) (UbcM2) Length = 207 Score = 27.7 bits (60), Expect = 7.0 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 2/110 (1%) Frame = +2 Query: 53 ENNHHHPSKTKDK--AKMGSRYEVEVTVGAARDLKNVNWRNGDLKPYAVLWIDAGARCST 226 E PS T+ K K+ S+ +++ A R K + A + +D CS Sbjct: 34 EQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKEL----------AEITLDPPPNCSA 83 Query: 227 RVDLDNGENPTWDDKVVVLLPPASRLQDAVLYLDIVHANAPEGVKPLVGF 376 DN ++ + +L PP S + V +LDI ++ P V F Sbjct: 84 GPKGDN----IYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTF 129
>UB2E3_HUMAN (Q969T4) Ubiquitin-conjugating enzyme E2 E3 (EC 6.3.2.19)| (Ubiquitin-protein ligase E3) (Ubiquitin carrier protein E3) (Ubiquitin-conjugating enzyme E2-23 kDa) (UbcH9) (UbcM2) Length = 207 Score = 27.7 bits (60), Expect = 7.0 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 2/110 (1%) Frame = +2 Query: 53 ENNHHHPSKTKDK--AKMGSRYEVEVTVGAARDLKNVNWRNGDLKPYAVLWIDAGARCST 226 E PS T+ K K+ S+ +++ A R K + A + +D CS Sbjct: 34 EQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKEL----------AEITLDPPPNCSA 83 Query: 227 RVDLDNGENPTWDDKVVVLLPPASRLQDAVLYLDIVHANAPEGVKPLVGF 376 DN ++ + +L PP S + V +LDI ++ P V F Sbjct: 84 GPKGDN----IYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTF 129
>HYEP_STIAU (Q06816) Epoxide hydrolase (EC 3.3.2.3) (Epoxide hydratase)| Length = 232 Score = 27.7 bits (60), Expect = 7.0 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Frame = +2 Query: 203 DAGARCSTRVDL---DNGENPTWDDKVVVLLPPASRLQDAVLYLDIVHANAPEGVKPLV 370 DA R TRV + D NP D V+ LP + VL NAPEG+KP V Sbjct: 63 DATERRFTRVKIPFADYAVNPKNSDWVIYGLPVTAIADGEVL---TCWRNAPEGLKPAV 118
>AROK_ARATH (Q9SJ05) Probable shikimate kinase, chloroplast precursor (EC| 2.7.1.71) Length = 292 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/36 (30%), Positives = 19/36 (52%) Frame = +2 Query: 59 NHHHPSKTKDKAKMGSRYEVEVTVGAARDLKNVNWR 166 N +T K+ SRY+V V+ G ++ +NW+ Sbjct: 156 NFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWK 191
>Y2222_VIBVU (Q8DAH7) UPF0208 membrane protein VV1_2222| Length = 150 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -1 Query: 174 SPLRQLTFLRSRAAPTVTSTSYREPIFALSLVLLGWWWL 58 S L Q+ F +A P + +FALSL L G WWL Sbjct: 54 SVLTQMAFNNYQALPQAIVMA----LFALSLPLQGMWWL 88
>Y2132_VIBVY (Q7MJM9) UPF0208 membrane protein VV2132| Length = 150 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -1 Query: 174 SPLRQLTFLRSRAAPTVTSTSYREPIFALSLVLLGWWWL 58 S L Q+ F +A P + +FALSL L G WWL Sbjct: 54 SVLTQMAFNNYQALPQAIVMA----LFALSLPLQGMWWL 88
>SAPS2_MOUSE (Q8R3Q2) SAPS domain family member 2| Length = 923 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 13/56 (23%) Frame = +2 Query: 116 VEVTVGAARDLKNVNWRNG-------------DLKPYAVLWIDAGARCSTRVDLDN 244 + T GAARD+ + W G D +P+ + G RCS+ VD+D+ Sbjct: 699 LSATPGAARDVGSSAWAAGPSVVEEKGWAKFTDFQPFCCS--ETGPRCSSPVDMDH 752
>MANA_RAT (Q68FX1) Mannose-6-phosphate isomerase (EC 5.3.1.8) (Phosphomannose| isomerase) (PMI) (Phosphohexomutase) Length = 423 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/50 (34%), Positives = 27/50 (54%) Frame = +2 Query: 95 KMGSRYEVEVTVGAARDLKNVNWRNGDLKPYAVLWIDAGARCSTRVDLDN 244 K+GS+ EV + + L ++ + KPYA LW+ A R ++ LDN Sbjct: 20 KVGSKSEVACLLACSDPLTQIS----EDKPYAELWMGAHPRGDAKI-LDN 64
>GAS6_MOUSE (Q61592) Growth-arrest-specific protein 6 precursor (GAS-6)| Length = 674 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +2 Query: 224 TRVDLDNGENPTWDDKVVVLLPPAS 298 TR LD G TW+ KVV + PA+ Sbjct: 490 TRTSLDVGTETTWEVKVVARIRPAT 514
>SIR2_ASHGO (Q757M7) NAD-dependent histone deacetylase SIR2 (EC 3.5.1.-)| (Regulatory protein SIR2) (Silent information regulator 2) Length = 559 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +2 Query: 200 IDAGARCSTRVDLDNGENPTWDDKVVVLLPPASRLQDAV 316 +D G T+VD+D+G + D+K ++ A L + V Sbjct: 19 VDVGGAKRTKVDMDDGSSSNNDEKELLEATKADELDEVV 57
>GYRB_HAEIN (P43701) DNA gyrase subunit B (EC 5.99.1.3)| Length = 806 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 193 HGVGLEVAVAPVDVLEVPRRAHGHLH 116 HGVG+ V A D L++ R GH+H Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVH 145
>PLC1_YEAST (P32383) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (PLC-1) (Phospholipase C-1) Length = 869 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%) Frame = +2 Query: 173 DLKPYAVLWIDAGAR-----CSTRVDLDNGENPTWDDKVVVLL 286 D +P + ID G R ST+ NG NP WD +V + L Sbjct: 769 DDEPTMPISIDKGTRISATEASTKSSQGNGFNPIWDAEVSITL 811
>MASZ_BRUSU (Q8FZ50) Malate synthase G (EC 2.3.3.9)| Length = 728 Score = 27.3 bits (59), Expect = 9.2 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 11/67 (16%) Frame = +2 Query: 77 KTKDKAKMGSRYEVEVTVGAARDLKNVNWRNGDLKP-----------YAVLWIDAGARCS 223 K++ +AK+ V V V NW D++ Y V WID G CS Sbjct: 571 KSRPRAKLDDILSVPVAV-------RPNWTPDDIQHEIDNNAQGILGYVVRWIDQGVGCS 623 Query: 224 TRVDLDN 244 D++N Sbjct: 624 KVPDINN 630
>MASZ_BRUME (Q8YIR3) Malate synthase G (EC 2.3.3.9)| Length = 728 Score = 27.3 bits (59), Expect = 9.2 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 11/67 (16%) Frame = +2 Query: 77 KTKDKAKMGSRYEVEVTVGAARDLKNVNWRNGDLKP-----------YAVLWIDAGARCS 223 K++ +AK+ V V V NW D++ Y V WID G CS Sbjct: 571 KSRPRAKLDDILSVPVAV-------RPNWTPDDIQHEIDNNAQGILGYVVRWIDQGVGCS 623 Query: 224 TRVDLDN 244 D++N Sbjct: 624 KVPDINN 630 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,550,443 Number of Sequences: 219361 Number of extensions: 560727 Number of successful extensions: 2168 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 2137 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2168 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
