>SEM6C_MOUSE (Q9WTM3) Semaphorin-6C precursor (Semaphorin Y) (Sema Y)|
          Length = 931

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 35/123 (28%), Positives = 46/123 (37%), Gaps = 18/123 (14%)
 Frame = -1

Query: 342 NHWKQVQVRKLSLPK-LSVCSLRRL--GSPSPLWNP-----CRTSRAHAAAMKPQA*GKP 187
           N  +   +    LP+ LS+ SL RL  G P P   P      +T + +   + P   G P
Sbjct: 634 NRRRSKDIETPGLPRPLSLRSLARLHGGGPEPPPPPKDGDAAQTPQLYTTFLPPPDGGSP 693

Query: 186 IE----------PPGEFRRLAGVGRSGWGWEERLGFGVGGRGETPLGLSLASRPADRVSL 37
            E          P    + L   G   W W +       G G  P G S A  PA RV +
Sbjct: 694 PELACLPTPETTPELPVKHLRASG-GPWEWNQNGNNASEGPGRPPRGCSGAGGPAPRVLV 752

Query: 36  TPP 28
            PP
Sbjct: 753 RPP 755

>VL2_HPV58 (P26538) Minor capsid protein L2|
          Length = 472

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
 Frame = -1

Query: 279 RRLGSPSPLWNPCRTSRAHAAAMKPQA*GKPIEPPGEFRRLAGVGRSGWGWEERLGFGVG 100
           R+  S + L+  C+ S      + P+  G  I    +  R   +G    G     G G G
Sbjct: 9   RKRASATQLYQTCKASGTCPPDVIPKVEGTTIAD--QILRYGSLGVFFGGLGIGTGSGTG 66

Query: 99  GR-GETPLGLSLASRPADRVSLTPPVTED 16
           GR G  PLG +  S       + PPVT D
Sbjct: 67  GRTGYVPLGSTPPSEAIPLQPIRPPVTVD 95

>SPP2_USTMA (Q4P9X4) Pre-mRNA-splicing factor SPP2|
          Length = 417

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
 Frame = -1

Query: 138 GWGWEERLGFGVGGRGETP----------LGLSLASRPADRVSLTPP 28
           G GW+E +G G GG+G             LGL    RP   ++L+ P
Sbjct: 237 GMGWKEGMGAGKGGKGPQQAAEPRKRAALLGLGAKERPTGPLNLSKP 283

>SC5A1_SHEEP (P53791) Sodium/glucose cotransporter 1 (Na(+)/glucose|
           cotransporter 1) (High affinity sodium-glucose
           cotransporter)
          Length = 664

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 192 FLKPVASSRQHELCWFCKDSKEE 260
           F KP+A    + LCW  ++SKEE
Sbjct: 547 FTKPIADVHLYRLCWSLRNSKEE 569

>CG029_HUMAN (Q96FA7) Protein C7orf29|
          Length = 236

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
 Frame = -1

Query: 342 NHWKQVQVRKLSLPKLSVCSLRRLGSPSPLWNP---C--RTSRAHAAAMKPQA*GKPIE 181
           +HWKQV V K+   ++S  S   L SPSPL +P   C   T  A ++ ++ ++ G+P++
Sbjct: 97  DHWKQVLVYKVKEIRVSEYS---LNSPSPLQSPRGLCVDPTRVAKSSGVEGRSQGEPLQ 152

>SYQ_XYLFT (Q87DU6) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 580

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +1

Query: 211 HRGSMSSAGSARIPKRRRTTKASEAADRQLREGQFPDLNLLPVVEALNTGGSLSINEPVS 390
           +RG+++ AG    P R R+   +    RQ+R G FPD       +     G++++ +P  
Sbjct: 139 YRGTLTEAGRPS-PWRERSPDENLELFRQMRAGTFPDGTRTLRAKIDMASGNINLRDPAL 197

Query: 391 HR 396
           +R
Sbjct: 198 YR 199

>SYQ_XYLFA (Q9PDP1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 580

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +1

Query: 211 HRGSMSSAGSARIPKRRRTTKASEAADRQLREGQFPDLNLLPVVEALNTGGSLSINEPVS 390
           +RG+++ AG    P R R+   +    RQ+R G FPD       +     G++++ +P  
Sbjct: 139 YRGTLTEAGRPS-PWRERSPDENLELFRQMRAGTFPDGTRTLRAKIDMASGNINLRDPAL 197

Query: 391 HR 396
           +R
Sbjct: 198 YR 199

>CCDC9_MOUSE (Q8VC31) Coiled-coil domain-containing protein 9|
          Length = 543

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = -1

Query: 156 AGVGRSGWGWE----ERLGFGVGGRGETPLG 76
           AGVGR+  GWE    E+L  G GGRG    G
Sbjct: 102 AGVGRASQGWEDGAGEQLRGGPGGRGRRGRG 132

>ALK_MOUSE (P97793) ALK tyrosine kinase receptor precursor (EC 2.7.10.1)|
           (Anaplastic lymphoma kinase) (CD246 antigen)
          Length = 1621

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 135 WGWEERLGFGVGGRG 91
           WGWE R GFG GG G
Sbjct: 917 WGWETRGGFGGGGGG 931

>ALK_HUMAN (Q9UM73) ALK tyrosine kinase receptor precursor (EC 2.7.10.1)|
           (Anaplastic lymphoma kinase) (CD246 antigen)
          Length = 1620

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 135 WGWEERLGFGVGGRG 91
           WGWE R GFG GG G
Sbjct: 913 WGWETRGGFGGGGGG 927

>CCG8_NEUCR (Q01306) Clock-controlled protein 8|
          Length = 661

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 331 LPVVEALNTGGSLSINEPVSHRQPPPMVV 417
           LP + +LN G SL   +P    QPPP  V
Sbjct: 176 LPSIASLNVGSSLPTLQPTPTPQPPPKFV 204

>MURE_PSEPK (Q88N81) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 496

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = -1

Query: 111 FGVGG---RGETPLGLSLASRPADRVSLTP--PVTED 16
           FG GG   RG+ PL   +A R ADRV +T   P TED
Sbjct: 381 FGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTED 417

>LAS17_YEAST (Q12446) Proline-rich protein LAS17|
          Length = 633

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 24/90 (26%), Positives = 32/90 (35%)
 Frame = -1

Query: 306 LPKLSVCSLRRLGSPSPLWNPCRTSRAHAAAMKPQA*GKPIEPPGEFRRLAGVGRSGWGW 127
           LP+L   + R +  P P+      S     A  P     P  PP   R +     +  G 
Sbjct: 313 LPQLPNRNNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRGPAPPPPPHRHVTSNTLNSAGG 372

Query: 126 EERLGFGVGGRGETPLGLSLASRPADRVSL 37
              L    G RG  P     ASRP   V++
Sbjct: 373 NSLLPQATGRRGPAPPPPPRASRPTPNVTM 402

>US02_EHV1K (P32517) US1 protein|
          Length = 303

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 25/65 (38%), Positives = 28/65 (43%)
 Frame = -1

Query: 279 RRLGSPSPLWNPCRTSRAHAAAMKPQA*GKPIEPPGEFRRLAGVGRSGWGWEERLGFGVG 100
           RR  S   +  P R SRA A A    A   P  P G+ R  A        W ERL +GV 
Sbjct: 239 RRRPSEGGMRAPRRRSRAPAPARSTAAAATPPRP-GDPRAPAARRAGDVTWMERLLWGVF 297

Query: 99  GRGET 85
           GR  T
Sbjct: 298 GRTST 302

>VS41_GIALA (P92127) Variant-specific surface protein VSP4A1 precursor|
           (CRISP-90)
          Length = 687

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 231 CWFCKDSKEETDYQGVGGCRPTTSGGTVSGP 323
           C  C D+KE ++ +GV  CR  T     S P
Sbjct: 307 CLLCGDTKEASNDKGVANCRTCTKNANDSPP 337

>GALT9_DROME (Q8MRC9) Putative polypeptide N-acetylgalactosaminyltransferase 9|
           (EC 2.4.1.41) (Protein-UDP
           acetylgalactosaminyltransferase 9)
           (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 9) (pp-GaNTase 9)
          Length = 650

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 153 GVGRSGWGWEERLGFGVGGRGETPLGLSLASRPA 52
           G G SG G    +G G GG G+ P+ L+L + PA
Sbjct: 43  GAGASGAGSAPGVGGGAGGLGD-PIALALRNEPA 75

>SIRT1_MOUSE (Q923E4) NAD-dependent deacetylase sirtuin-1 (EC 3.5.1.-)|
           (SIR2alpha) (mSIR2a) (Sir2) (SIR2-like protein 1)
          Length = 737

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -2

Query: 371 ESEPPVLSASTTGSKFRSGNCPSRSCRSAASDALVVRLLFGILAEPAE 228
           +SE  VLS+S+ GS   SG C S S      D   +   +  L +  E
Sbjct: 650 DSEDDVLSSSSCGSNSDSGTCQSPSLEEPLEDESEIEEFYNGLEDDTE 697

>RR19_PORPU (P51310) Chloroplast 30S ribosomal protein S19|
          Length = 92

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 292 RQLREGQFPDLNLLPVVEALNTGGSLSI 375
           R + +G F D++LL  +EALNT G   +
Sbjct: 3   RSIHKGPFIDVSLLTRIEALNTSGKKEV 30

>UN93L_ARATH (Q94AA1) UNC93-like protein|
          Length = 464

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 371 ESEPPVLSASTTGSKFRSGNCPSRSCRSAASDALVVRLLFG 249
           + E P++SAS    K R+G C +R     +   L++ L +G
Sbjct: 6   DEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYG 46

>SC5A4_MOUSE (Q9ET37) Low affinity sodium-glucose cotransporter (Sodium/glucose|
           cotransporter 3) (Na(+)/glucose cotransporter 3)
          Length = 656

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 198 KPVASSRQHELCWFCKDSKEE 260
           KP+     H LCW  ++SKEE
Sbjct: 549 KPIPDVHLHRLCWALRNSKEE 569

>EXOS3_MOUSE (Q7TQK4) Exosome complex exonuclease RRP40 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 40) (Exosome component 3)
          Length = 273

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 108 GVGGRGETPLGLSLASRPADRVSLTPPVTEDDLCGE 1
           G+GG GE PL L+  +RP  RV   P +     CG+
Sbjct: 43  GLGGAGEQPLRLNAGARPRLRVVCGPGLRR---CGD 75

>Y1728_DEIRA (Q9RTN2) UPF0085 protein DR1728|
          Length = 277

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 153 GVGRSGWGWEERLGFGVGGRGETPLGLSLASRPADRVSLTPPVTEDD 13
           G+G   +G  + +  GV   G+TP  L LA +   R S   P+ EDD
Sbjct: 141 GIGDKQYGLSDVILVGVSRAGKTPTSLFLALQHGIRAS-NYPLAEDD 186

>RP3A_BOVIN (Q06846) Rabphilin-3A (Exophilin-1)|
          Length = 704

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
 Frame = -1

Query: 195 GKPIEPPGEFRRLAGVGRSGWGWEERLGFGVGGRGETPLGLS-----LASRPADRVSLTP 31
           G P+    E  R++  GR    W++  G   G   ++P GL       ASRPA     +P
Sbjct: 233 GPPVRRASE-ARMSSSGRDSDSWDQGHGMAAGDPSQSPAGLRRANSVQASRPAPASMQSP 291


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,377,355
Number of Sequences: 219361
Number of extensions: 1159351
Number of successful extensions: 3927
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3925
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)