>TRUA_NEIMB (Q9JXI2) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 265

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 163 DGVGLLHGRPVA-HVHGRPDERHGEVRGLAEAGPLQHPLLERHA 35
           +G+ +LH R VA   H R D      R L E+ P++ PLL+  A
Sbjct: 91  EGIAVLHARQVAPEFHARFDAYGRHYRYLLESAPVRSPLLKNRA 134

>TRUA_NEIMA (Q9JWF1) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 265

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 163 DGVGLLHGRPVA-HVHGRPDERHGEVRGLAEAGPLQHPLLERHA 35
           +G+ +LH R VA   H R D      R L E+ P++ PLL+  A
Sbjct: 91  EGIAVLHARQVAPEFHARFDAYGRHYRYLLESAPVRSPLLKNRA 134

>FABH_CAUCR (Q9A8I4) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase III)
           (Beta-ketoacyl-ACP synthase III) (KAS III)
          Length = 322

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 9/121 (7%)
 Frame = +2

Query: 131 DRTAMEESHA---------VIFGVVDEVLRKSGVAAGDVGVLIFNXXXXXXXXXXXXXIV 283
           +RT + + H          + F    E L  +G  A DV ++I               IV
Sbjct: 35  ERTGIRQRHQAADDQPVSDLAFEAAKEALAAAGKTAADVDLIIVATTTGDLTFPATATIV 94

Query: 284 NRYRFRDDVVTHNLSGMGCSAGIIAIDPAKRLLQVHRNTYALVVSTENITLTPTWHNRPC 463
            R       V  ++  + CS  + A+  A   +    +  ALV+  E +T    W +R  
Sbjct: 95  QRKLGAPVGVAFDVQAV-CSGFVYAMSVADGFVARGHSKCALVIGAEAMTRLMDWSDRGT 153

Query: 464 C 466
           C
Sbjct: 154 C 154

>TRUA_NEIG1 (Q5F5V8) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 265

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 163 DGVGLLHGRPVAH-VHGRPDERHGEVRGLAEAGPLQHPLLERHA 35
           +G+ +LH R VA   H R D      R L E+ P++ PLL+  A
Sbjct: 91  EGIAVLHARQVAPGFHARFDASGRHYRYLLESAPVRSPLLKNRA 134

>RS5_NITMU (Q2YAY0) 30S ribosomal protein S5|
          Length = 180

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -2

Query: 211 GRHAGLAEDLVDDPEDDGVGLLHGR----PVAHVHGRPDERHGEVRGLAEAGPLQHPLLE 44
           GR  G A   V    D GVG+  G+    PVA      + R   ++   + G LQHP++ 
Sbjct: 39  GRILGFAALTVVGNGDGGVGMGKGKSREVPVAVQKAMDEARRKMIKVSLKNGTLQHPVIG 98

Query: 43  RH 38
           RH
Sbjct: 99  RH 100

>UVRA_METTH (O26543) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 962

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
 Frame = -2

Query: 214 AGRHAGLA------EDLVDDPEDDGVGLLHGR---PVAHVHGRPDERHGEVRGLAE 74
           AG H G        E++++DP+      L GR   P+  V  RP  R+  VRG AE
Sbjct: 574 AGEHGGCVVAEGTPEEIMEDPDSLTGAYLSGRETIPLPEVRRRPSGRYLTVRGAAE 629

>SYT12_HUMAN (Q8IV01) Synaptotagmin-12 (Synaptotagmin XII) (SytXII)|
          Length = 421

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 177 TTPKMTAWDSSMAVR-SHMSTGGRMSDMGKCVASPRPDRSSIRFWNAMLCSLNRP 16
           + P +   D S+ V  +  S+ GR  ++G  +  P         WN ML +L RP
Sbjct: 357 SVPAIVLQDLSLRVTVAESSSDGRGDNVGHVIIGPSASGMGTTHWNQMLATLRRP 411

>SYT12_RAT (P97610) Synaptotagmin-12 (Synaptotagmin XII) (SytXII)|
           (Synaptotagmin-related gene 1 protein) (Srg1)
          Length = 421

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 177 TTPKMTAWDSSMAVR-SHMSTGGRMSDMGKCVASPRPDRSSIRFWNAMLCSLNRP 16
           + P +   D S+ V  +  S+ GR  ++G  +  P         WN ML +L RP
Sbjct: 357 SVPAIVLQDLSLRVTVAESSSDGRGDNVGHVIIGPGASGMGTTHWNQMLATLRRP 411

>GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC 2.5.1.18)|
           (Protein bronze-2)
          Length = 236

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 20/45 (44%), Positives = 25/45 (55%)
 Frame = +1

Query: 4   LPAVRAVQRAEHGVPEADAGAVRPRRGHALPHVAHPAARGHVRPD 138
           LPA+RA +R  HG+   DA A     G +    AHPAA+  V PD
Sbjct: 172 LPALRACERL-HGLSLIDASATPLLDGWSQRFAAHPAAK-RVLPD 214

>TPIS_VIBMA (P50921) Triosephosphate isomerase (EC 5.3.1.1) (TIM)|
           (Triose-phosphate isomerase)
          Length = 256

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +2

Query: 107 IRPP---VDMCDRTAMEESHAVIFGVVDEVLRKSGVAAGDV 220
           + PP   VD+ +RT  E   A+I G  +  L  SG   GD+
Sbjct: 40  VAPPALFVDLAERTLTEAGSAIILGAQNTDLNNSGAFTGDM 80

>TPIS_VIBF1 (Q5E8E5) Triosephosphate isomerase (EC 5.3.1.1) (TIM)|
           (Triose-phosphate isomerase)
          Length = 256

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +2

Query: 107 IRPP---VDMCDRTAMEESHAVIFGVVDEVLRKSGVAAGDV 220
           + PP   VD+ +RT  E   A+I G  +  L  SG   GD+
Sbjct: 40  VAPPALFVDLAERTLTEAGSAIILGAQNTDLNNSGAFTGDM 80

>SYT12_MOUSE (Q920N7) Synaptotagmin-12 (Synaptotagmin XII) (SytXII)|
          Length = 421

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 177 TTPKMTAWDSSMAVR-SHMSTGGRMSDMGKCVASPRPDRSSIRFWNAMLCSLNRP 16
           + P +   D S+ V  +  S+ GR  ++G  +  P         WN ML +L RP
Sbjct: 357 SVPAIVLQDLSLRVTVAESSSDGRGDNVGHVIIGPGVSGMGTTHWNQMLATLRRP 411

>NFIC_HUMAN (P08651) Nuclear factor 1 C-type (Nuclear factor 1/C) (NF1-C)|
           (NFI-C) (NF-I/C) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 508

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = -3

Query: 255 GLSRLELKMSTPTSPAATPDLRRTSSTTPKMTAWDSSMAVRSHMSTGGR 109
           GL RL L  +T   PA T +   TS T+P  +  D+S A RS +  G R
Sbjct: 448 GLPRLALPPAT--KPATTSEGGATSPTSPSYSPPDTSPANRSFVGLGPR 494

>DDX56_HUMAN (Q9NY93) Probable ATP-dependent RNA helicase DDX56 (EC 3.6.1.-)|
           (DEAD box protein 56) (ATP-dependent 61 kDa nucleolar
           RNA helicase) (DEAD-box protein 21)
          Length = 547

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 16  RAVQRAEHGVPEADAGAVRPRRGHALPHVAHPAARGHVRP 135
           R +Q   H +P   A  V+P  GH   ++  PA RG VRP
Sbjct: 469 RDLQLLRHDLPLHPA-VVKPHLGHVPDYLVPPALRGLVRP 507

>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor|
          Length = 725

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -3

Query: 228 STPTSPAATPDLRRTSSTTP--KMTAWDSSMAVRSHMSTGGRMSDMGKCVASPRPDRSSI 55
           ST TSP++T     ++ST+P  K T+  S+       ST   ++     +AS  P  +SI
Sbjct: 258 STSTSPSSTSTSSSSTSTSPSSKSTSASSTSTSSYSTSTSPSLTSSSPTLASTSPSSTSI 317

>PSV_DICDI (P08798) Prespore vesicle protein precursor (PSV)|
          Length = 513

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
 Frame = -2

Query: 208 RHAGLAEDLVDDPEDDGVGLLHGRPVAH----------VHGRPDERHGEVRGLAEAGPLQ 59
           +HA  A      P        H +P AH          V     ++H +      A P+Q
Sbjct: 381 QHAKPAAHTAAKPVQHNAAQQHAKPAAHAKPAVNAARPVQHNAAQQHAKPAAHTAAKPVQ 440

Query: 58  HPLLERHALLAEPPAPL 8
           H   ++HA  A  PA L
Sbjct: 441 HNAAQQHAKPAAKPAKL 457



 Score = 28.5 bits (62), Expect = 9.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 145 HGRPVAHVHGRPDERHGEVRGLAEAGPLQHPLLERHA 35
           H +P  HV  +  ++H +      A P+QH   ++HA
Sbjct: 347 HAKPAQHVAQQQQQQHAKPAAHTAAKPVQHNAQQQHA 383

>GLADA_STRSD (Q2MF12) Putative L-glutamine:3-amino-2,3-dideoxy-scyllo-inosose|
           aminotransferase (EC 2.6.1.-) (Putative
           L-glutamine:amino-DOI aminotransferase)
          Length = 416

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 302 DDVVTHNLSGMGCSAGIIAIDPAKRLLQVHRNTYALVVSTENITLTP 442
           D+V+T   + MG +A I+ I+    L+ +  NT+ +  +     +TP
Sbjct: 90  DEVITTGYTWMGTAASIVHINAVPVLVDIDPNTWCIDPAAVEAAITP 136


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,334,949
Number of Sequences: 219361
Number of extensions: 935500
Number of successful extensions: 4004
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4001
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)