ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet71f12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469954.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2252 Score = 327 bits (165), Expect = 1e-86 Identities = 315/366 (86%) Strand = Plus / Plus Query: 9 atcaaggccaccgtgccgctcaacgccgacgtctacaactcgccctccgccaacccggtg 68 |||||||||||||||||||||||||||||||| ||| ||||||| | | | | |||| Sbjct: 1070 atcaaggccaccgtgccgctcaacgccgacgtatacgactcgccgcaggaccagcaggtg 1129 Query: 69 ccgtcggcaggccggttccggacggacgtcacccagctcatgacgcagatggtgcagttc 128 |||||||| || |||||||| | ||| || || | || ||||||||||||||||||||| Sbjct: 1130 ccgtcggcggggcggttccgcgccgacatcgccgacctgatgacgcagatggtgcagttc 1189 Query: 129 ctggccaacaacagcgcgccattcaccgtcaacatctacccctacctcagcctctacctc 188 |||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||| Sbjct: 1190 ctggccaacaacagcgcgccgttcaccgtcaacatctaccctttcatcagcctctacctc 1249 Query: 189 agcgccgacttccccgtcgacttcgccttcttcgacggcctcgcaacgccggtggtcgac 248 | || |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| Sbjct: 1250 aacgacgacttccccgtcgacttcgccttcttcgacggcggcgcgacgccggtggtggac 1309 Query: 249 ggcgtcaacacgtacaccaacgtgttcgacgccaacttcgacacgctggtgtccgcgctg 308 || || | | ||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 1310 aacggcatctcctacaccaacgtgttcgacgccaacttcgacacgctggtggcggcgctc 1369 Query: 309 gccgccgtcggncacggngacctgcccatcatcatcggcgaggncggctggccgacggac 368 | |||||| ||||| ||| |||||||| || ||||||||| ||||||||| || ||| Sbjct: 1370 aagggcgtcggccacggcgacatgcccatcgtcgtcggcgaggtcggctggcccaccgac 1429 Query: 369 ggcgac 374 |||||| Sbjct: 1430 ggcgac 1435
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 327 bits (165), Expect = 1e-86 Identities = 315/366 (86%) Strand = Plus / Minus Query: 9 atcaaggccaccgtgccgctcaacgccgacgtctacaactcgccctccgccaacccggtg 68 |||||||||||||||||||||||||||||||| ||| ||||||| | | | | |||| Sbjct: 75757 atcaaggccaccgtgccgctcaacgccgacgtatacgactcgccgcaggaccagcaggtg 75698 Query: 69 ccgtcggcaggccggttccggacggacgtcacccagctcatgacgcagatggtgcagttc 128 |||||||| || |||||||| | ||| || || | || ||||||||||||||||||||| Sbjct: 75697 ccgtcggcggggcggttccgcgccgacatcgccgacctgatgacgcagatggtgcagttc 75638 Query: 129 ctggccaacaacagcgcgccattcaccgtcaacatctacccctacctcagcctctacctc 188 |||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||| Sbjct: 75637 ctggccaacaacagcgcgccgttcaccgtcaacatctaccctttcatcagcctctacctc 75578 Query: 189 agcgccgacttccccgtcgacttcgccttcttcgacggcctcgcaacgccggtggtcgac 248 | || |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| Sbjct: 75577 aacgacgacttccccgtcgacttcgccttcttcgacggcggcgcgacgccggtggtggac 75518 Query: 249 ggcgtcaacacgtacaccaacgtgttcgacgccaacttcgacacgctggtgtccgcgctg 308 || || | | ||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 75517 aacggcatctcctacaccaacgtgttcgacgccaacttcgacacgctggtggcggcgctc 75458 Query: 309 gccgccgtcggncacggngacctgcccatcatcatcggcgaggncggctggccgacggac 368 | |||||| ||||| ||| |||||||| || ||||||||| ||||||||| || ||| Sbjct: 75457 aagggcgtcggccacggcgacatgcccatcgtcgtcggcgaggtcggctggcccaccgac 75398 Query: 369 ggcgac 374 |||||| Sbjct: 75397 ggcgac 75392
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 327 bits (165), Expect = 1e-86 Identities = 315/366 (86%) Strand = Plus / Plus Query: 9 atcaaggccaccgtgccgctcaacgccgacgtctacaactcgccctccgccaacccggtg 68 |||||||||||||||||||||||||||||||| ||| ||||||| | | | | |||| Sbjct: 32668150 atcaaggccaccgtgccgctcaacgccgacgtatacgactcgccgcaggaccagcaggtg 32668209 Query: 69 ccgtcggcaggccggttccggacggacgtcacccagctcatgacgcagatggtgcagttc 128 |||||||| || |||||||| | ||| || || | || ||||||||||||||||||||| Sbjct: 32668210 ccgtcggcggggcggttccgcgccgacatcgccgacctgatgacgcagatggtgcagttc 32668269 Query: 129 ctggccaacaacagcgcgccattcaccgtcaacatctacccctacctcagcctctacctc 188 |||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||| Sbjct: 32668270 ctggccaacaacagcgcgccgttcaccgtcaacatctaccctttcatcagcctctacctc 32668329 Query: 189 agcgccgacttccccgtcgacttcgccttcttcgacggcctcgcaacgccggtggtcgac 248 | || |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| Sbjct: 32668330 aacgacgacttccccgtcgacttcgccttcttcgacggcggcgcgacgccggtggtggac 32668389 Query: 249 ggcgtcaacacgtacaccaacgtgttcgacgccaacttcgacacgctggtgtccgcgctg 308 || || | | ||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 32668390 aacggcatctcctacaccaacgtgttcgacgccaacttcgacacgctggtggcggcgctc 32668449 Query: 309 gccgccgtcggncacggngacctgcccatcatcatcggcgaggncggctggccgacggac 368 | |||||| ||||| ||| |||||||| || ||||||||| ||||||||| || ||| Sbjct: 32668450 aagggcgtcggccacggcgacatgcccatcgtcgtcggcgaggtcggctggcccaccgac 32668509 Query: 369 ggcgac 374 |||||| Sbjct: 32668510 ggcgac 32668515 Score = 117 bits (59), Expect = 3e-23 Identities = 179/219 (81%) Strand = Plus / Plus Query: 9 atcaaggccaccgtgccgctcaacgccgacgtctacaactcgccctccgccaacccggtg 68 |||||||||||||||||||| ||||||||||| ||||||||||| || | |||| Sbjct: 25339351 atcaaggccaccgtgccgctgaacgccgacgtgtacaactcgccggagaacatgcaggtg 25339410 Query: 69 ccgtcggcaggccggttccggacggacgtcacccagctcatgacgcagatggtgcagttc 128 |||||||| || |||||||| ||||| || || ||| |||||| |||| ||||||||| Sbjct: 25339411 ccgtcggcggggaggttccggccggacatcgccgggctgatgacggagatcgtgcagttc 25339470 Query: 129 ctggccaacaacagcgcgccattcaccgtcaacatctacccctacctcagcctctacctc 188 ||| | | | | ||||||| |||||||||||||||||||||| ||| ||||| ||| | Sbjct: 25339471 ctgaaccagagcggcgcgcccttcaccgtcaacatctaccccttcctgagcctgtacggc 25339530 Query: 189 agcgccgacttccccgtcgacttcgccttcttcgacggc 227 | || | ||||||| |||||| |||||||||||||||| Sbjct: 25339531 aacgacaacttcccgctcgactacgccttcttcgacggc 25339569 Score = 99.6 bits (50), Expect = 6e-18 Identities = 98/115 (85%) Strand = Plus / Plus Query: 260 gtacaccaacgtgttcgacgccaacttcgacacgctggtgtccgcgctggccgccgtcgg 319 |||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||| Sbjct: 25339605 gtacaccaacgtgttcgacgccaacttcgacacgctcgtgtcggcgctggtcgccgccgg 25339664 Query: 320 ncacggngacctgcccatcatcatcggcgaggncggctggccgacggacggcgac 374 ||| | ||| ||| || || ||||||||| ||| ||||| || ||||||||| Sbjct: 25339665 cgtcgggggcctccccgtcgtcgtcggcgaggtcgggtggccaaccgacggcgac 25339719 Score = 63.9 bits (32), Expect = 3e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 260 gtacaccaacgtgttcgacgccaacttcgacacgct 295 |||||||||||||||||||||||||| ||||||||| Sbjct: 15909920 gtacaccaacgtgttcgacgccaactacgacacgct 15909955 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Plus Query: 17 caccgtgccgctcaacgccgacgtctac 44 |||||| ||||||||||||||||||||| Sbjct: 15909668 caccgtcccgctcaacgccgacgtctac 15909695 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgc 280 |||||||||||||||||||| Sbjct: 6340689 tacaccaacgtgttcgacgc 6340708
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 327 bits (165), Expect = 1e-86 Identities = 315/366 (86%) Strand = Plus / Plus Query: 9 atcaaggccaccgtgccgctcaacgccgacgtctacaactcgccctccgccaacccggtg 68 |||||||||||||||||||||||||||||||| ||| ||||||| | | | | |||| Sbjct: 32758660 atcaaggccaccgtgccgctcaacgccgacgtatacgactcgccgcaggaccagcaggtg 32758719 Query: 69 ccgtcggcaggccggttccggacggacgtcacccagctcatgacgcagatggtgcagttc 128 |||||||| || |||||||| | ||| || || | || ||||||||||||||||||||| Sbjct: 32758720 ccgtcggcggggcggttccgcgccgacatcgccgacctgatgacgcagatggtgcagttc 32758779 Query: 129 ctggccaacaacagcgcgccattcaccgtcaacatctacccctacctcagcctctacctc 188 |||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||| Sbjct: 32758780 ctggccaacaacagcgcgccgttcaccgtcaacatctaccctttcatcagcctctacctc 32758839 Query: 189 agcgccgacttccccgtcgacttcgccttcttcgacggcctcgcaacgccggtggtcgac 248 | || |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| Sbjct: 32758840 aacgacgacttccccgtcgacttcgccttcttcgacggcggcgcgacgccggtggtggac 32758899 Query: 249 ggcgtcaacacgtacaccaacgtgttcgacgccaacttcgacacgctggtgtccgcgctg 308 || || | | ||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 32758900 aacggcatctcctacaccaacgtgttcgacgccaacttcgacacgctggtggcggcgctc 32758959 Query: 309 gccgccgtcggncacggngacctgcccatcatcatcggcgaggncggctggccgacggac 368 | |||||| ||||| ||| |||||||| || ||||||||| ||||||||| || ||| Sbjct: 32758960 aagggcgtcggccacggcgacatgcccatcgtcgtcggcgaggtcggctggcccaccgac 32759019 Query: 369 ggcgac 374 |||||| Sbjct: 32759020 ggcgac 32759025 Score = 117 bits (59), Expect = 3e-23 Identities = 179/219 (81%) Strand = Plus / Plus Query: 9 atcaaggccaccgtgccgctcaacgccgacgtctacaactcgccctccgccaacccggtg 68 |||||||||||||||||||| ||||||||||| ||||||||||| || | |||| Sbjct: 25430660 atcaaggccaccgtgccgctgaacgccgacgtgtacaactcgccggagaacatgcaggtg 25430719 Query: 69 ccgtcggcaggccggttccggacggacgtcacccagctcatgacgcagatggtgcagttc 128 |||||||| || |||||||| ||||| || || ||| |||||| |||| ||||||||| Sbjct: 25430720 ccgtcggcggggaggttccggccggacatcgccgggctgatgacggagatcgtgcagttc 25430779 Query: 129 ctggccaacaacagcgcgccattcaccgtcaacatctacccctacctcagcctctacctc 188 ||| | | | | ||||||| |||||||||||||||||||||| ||| ||||| ||| | Sbjct: 25430780 ctgaaccagagcggcgcgcccttcaccgtcaacatctaccccttcctgagcctgtacggc 25430839 Query: 189 agcgccgacttccccgtcgacttcgccttcttcgacggc 227 | || | ||||||| |||||| |||||||||||||||| Sbjct: 25430840 aacgacaacttcccgctcgactacgccttcttcgacggc 25430878 Score = 99.6 bits (50), Expect = 6e-18 Identities = 98/115 (85%) Strand = Plus / Plus Query: 260 gtacaccaacgtgttcgacgccaacttcgacacgctggtgtccgcgctggccgccgtcgg 319 |||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||| Sbjct: 25430914 gtacaccaacgtgttcgacgccaacttcgacacgctcgtgtcggcgctggtcgccgccgg 25430973 Query: 320 ncacggngacctgcccatcatcatcggcgaggncggctggccgacggacggcgac 374 ||| | ||| ||| || || ||||||||| ||| ||||| || ||||||||| Sbjct: 25430974 cgtcgggggcctccccgtcgtcgtcggcgaggtcgggtggccaaccgacggcgac 25431028 Score = 63.9 bits (32), Expect = 3e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 260 gtacaccaacgtgttcgacgccaacttcgacacgct 295 |||||||||||||||||||||||||| ||||||||| Sbjct: 15904454 gtacaccaacgtgttcgacgccaactacgacacgct 15904489 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Plus Query: 17 caccgtgccgctcaacgccgacgtctac 44 |||||| ||||||||||||||||||||| Sbjct: 15904202 caccgtcccgctcaacgccgacgtctac 15904229 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgc 280 |||||||||||||||||||| Sbjct: 6339902 tacaccaacgtgttcgacgc 6339921
>ref|XM_476739.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2008 Score = 226 bits (114), Expect = 4e-56 Identities = 216/251 (86%) Strand = Plus / Plus Query: 124 agttcctggccaacaacagcgcgccattcaccgtcaacatctacccctacctcagcctct 183 ||||||||||||| |||| |||||| |||||||||||||||||||||| ||||||||| | Sbjct: 960 agttcctggccaagaacaacgcgcccttcaccgtcaacatctaccccttcctcagcctgt 1019 Query: 184 acctcagcgccgacttccccgtcgacttcgccttcttcgacggcctcgcaacgccggtgg 243 |||| || ||||||| || |||||||||||||||||||| | ||||||||||| Sbjct: 1020 acctggacgaacacttcccgatcaacttcgccttcttcgacggcggctcaacgccggtga 1079 Query: 244 tcgacggcgtcaacacgtacaccaacgtgttcgacgccaacttcgacacgctggtgtccg 303 |||||||| || || ||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1080 acgacggcggcatcatgtacaccaacgtgttcgacgccaacttcgacacgctggttgccg 1139 Query: 304 cgctggccgccgtcggncacggngacctgcccatcatcatcggcgaggncggctggccga 363 |||| |||||||| ||||| ||| |||| |||||| ||||||||| ||| ||||||| Sbjct: 1140 cgctcaaggccgtcgggcacggcgacatgccgatcatcgtcggcgaggtcgggtggccga 1199 Query: 364 cggacggcgac 374 ||||||||||| Sbjct: 1200 cggacggcgac 1210 Score = 50.1 bits (25), Expect = 0.005 Identities = 31/33 (93%) Strand = Plus / Plus Query: 8 gatcaaggccaccgtgccgctcaacgccgacgt 40 ||||||||||||||| || |||||||||||||| Sbjct: 856 gatcaaggccaccgtccctctcaacgccgacgt 888
>ref|XM_506182.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0050F10.9 mRNA Length = 2205 Score = 226 bits (114), Expect = 4e-56 Identities = 216/251 (86%) Strand = Plus / Plus Query: 124 agttcctggccaacaacagcgcgccattcaccgtcaacatctacccctacctcagcctct 183 ||||||||||||| |||| |||||| |||||||||||||||||||||| ||||||||| | Sbjct: 1021 agttcctggccaagaacaacgcgcccttcaccgtcaacatctaccccttcctcagcctgt 1080 Query: 184 acctcagcgccgacttccccgtcgacttcgccttcttcgacggcctcgcaacgccggtgg 243 |||| || ||||||| || |||||||||||||||||||| | ||||||||||| Sbjct: 1081 acctggacgaacacttcccgatcaacttcgccttcttcgacggcggctcaacgccggtga 1140 Query: 244 tcgacggcgtcaacacgtacaccaacgtgttcgacgccaacttcgacacgctggtgtccg 303 |||||||| || || ||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1141 acgacggcggcatcatgtacaccaacgtgttcgacgccaacttcgacacgctggttgccg 1200 Query: 304 cgctggccgccgtcggncacggngacctgcccatcatcatcggcgaggncggctggccga 363 |||| |||||||| ||||| ||| |||| |||||| ||||||||| ||| ||||||| Sbjct: 1201 cgctcaaggccgtcgggcacggcgacatgccgatcatcgtcggcgaggtcgggtggccga 1260 Query: 364 cggacggcgac 374 ||||||||||| Sbjct: 1261 cggacggcgac 1271 Score = 50.1 bits (25), Expect = 0.005 Identities = 31/33 (93%) Strand = Plus / Plus Query: 8 gatcaaggccaccgtgccgctcaacgccgacgt 40 ||||||||||||||| || |||||||||||||| Sbjct: 917 gatcaaggccaccgtccctctcaacgccgacgt 949
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 226 bits (114), Expect = 4e-56 Identities = 216/251 (86%) Strand = Plus / Plus Query: 124 agttcctggccaacaacagcgcgccattcaccgtcaacatctacccctacctcagcctct 183 ||||||||||||| |||| |||||| |||||||||||||||||||||| ||||||||| | Sbjct: 3703224 agttcctggccaagaacaacgcgcccttcaccgtcaacatctaccccttcctcagcctgt 3703283 Query: 184 acctcagcgccgacttccccgtcgacttcgccttcttcgacggcctcgcaacgccggtgg 243 |||| || ||||||| || |||||||||||||||||||| | ||||||||||| Sbjct: 3703284 acctggacgaacacttcccgatcaacttcgccttcttcgacggcggctcaacgccggtga 3703343 Query: 244 tcgacggcgtcaacacgtacaccaacgtgttcgacgccaacttcgacacgctggtgtccg 303 |||||||| || || ||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 3703344 acgacggcggcatcatgtacaccaacgtgttcgacgccaacttcgacacgctggttgccg 3703403 Query: 304 cgctggccgccgtcggncacggngacctgcccatcatcatcggcgaggncggctggccga 363 |||| |||||||| ||||| ||| |||| |||||| ||||||||| ||| ||||||| Sbjct: 3703404 cgctcaaggccgtcgggcacggcgacatgccgatcatcgtcggcgaggtcgggtggccga 3703463 Query: 364 cggacggcgac 374 ||||||||||| Sbjct: 3703464 cggacggcgac 3703474 Score = 50.1 bits (25), Expect = 0.005 Identities = 31/33 (93%) Strand = Plus / Plus Query: 8 gatcaaggccaccgtgccgctcaacgccgacgt 40 ||||||||||||||| || |||||||||||||| Sbjct: 3703120 gatcaaggccaccgtccctctcaacgccgacgt 3703152 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgc 280 |||||||||||||||||||| Sbjct: 19384502 tacaccaacgtgttcgacgc 19384521
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0050F10 Length = 151986 Score = 226 bits (114), Expect = 4e-56 Identities = 216/251 (86%) Strand = Plus / Plus Query: 124 agttcctggccaacaacagcgcgccattcaccgtcaacatctacccctacctcagcctct 183 ||||||||||||| |||| |||||| |||||||||||||||||||||| ||||||||| | Sbjct: 47575 agttcctggccaagaacaacgcgcccttcaccgtcaacatctaccccttcctcagcctgt 47634 Query: 184 acctcagcgccgacttccccgtcgacttcgccttcttcgacggcctcgcaacgccggtgg 243 |||| || ||||||| || |||||||||||||||||||| | ||||||||||| Sbjct: 47635 acctggacgaacacttcccgatcaacttcgccttcttcgacggcggctcaacgccggtga 47694 Query: 244 tcgacggcgtcaacacgtacaccaacgtgttcgacgccaacttcgacacgctggtgtccg 303 |||||||| || || ||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 47695 acgacggcggcatcatgtacaccaacgtgttcgacgccaacttcgacacgctggttgccg 47754 Query: 304 cgctggccgccgtcggncacggngacctgcccatcatcatcggcgaggncggctggccga 363 |||| |||||||| ||||| ||| |||| |||||| ||||||||| ||| ||||||| Sbjct: 47755 cgctcaaggccgtcgggcacggcgacatgccgatcatcgtcggcgaggtcgggtggccga 47814 Query: 364 cggacggcgac 374 ||||||||||| Sbjct: 47815 cggacggcgac 47825 Score = 50.1 bits (25), Expect = 0.005 Identities = 31/33 (93%) Strand = Plus / Plus Query: 8 gatcaaggccaccgtgccgctcaacgccgacgt 40 ||||||||||||||| || |||||||||||||| Sbjct: 47471 gatcaaggccaccgtccctctcaacgccgacgt 47503
>dbj|AK105668.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-H12, full insert sequence Length = 2008 Score = 226 bits (114), Expect = 4e-56 Identities = 216/251 (86%) Strand = Plus / Plus Query: 124 agttcctggccaacaacagcgcgccattcaccgtcaacatctacccctacctcagcctct 183 ||||||||||||| |||| |||||| |||||||||||||||||||||| ||||||||| | Sbjct: 960 agttcctggccaagaacaacgcgcccttcaccgtcaacatctaccccttcctcagcctgt 1019 Query: 184 acctcagcgccgacttccccgtcgacttcgccttcttcgacggcctcgcaacgccggtgg 243 |||| || ||||||| || |||||||||||||||||||| | ||||||||||| Sbjct: 1020 acctggacgaacacttcccgatcaacttcgccttcttcgacggcggctcaacgccggtga 1079 Query: 244 tcgacggcgtcaacacgtacaccaacgtgttcgacgccaacttcgacacgctggtgtccg 303 |||||||| || || ||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1080 acgacggcggcatcatgtacaccaacgtgttcgacgccaacttcgacacgctggttgccg 1139 Query: 304 cgctggccgccgtcggncacggngacctgcccatcatcatcggcgaggncggctggccga 363 |||| |||||||| ||||| ||| |||| |||||| ||||||||| ||| ||||||| Sbjct: 1140 cgctcaaggccgtcgggcacggcgacatgccgatcatcgtcggcgaggtcgggtggccga 1199 Query: 364 cggacggcgac 374 ||||||||||| Sbjct: 1200 cggacggcgac 1210 Score = 50.1 bits (25), Expect = 0.005 Identities = 31/33 (93%) Strand = Plus / Plus Query: 8 gatcaaggccaccgtgccgctcaacgccgacgt 40 ||||||||||||||| || |||||||||||||| Sbjct: 856 gatcaaggccaccgtccccctcaacgccgacgt 888
>dbj|AK068262.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149M23, full insert sequence Length = 2205 Score = 226 bits (114), Expect = 4e-56 Identities = 216/251 (86%) Strand = Plus / Plus Query: 124 agttcctggccaacaacagcgcgccattcaccgtcaacatctacccctacctcagcctct 183 ||||||||||||| |||| |||||| |||||||||||||||||||||| ||||||||| | Sbjct: 1021 agttcctggccaagaacaacgcgcccttcaccgtcaacatctaccccttcctcagcctgt 1080 Query: 184 acctcagcgccgacttccccgtcgacttcgccttcttcgacggcctcgcaacgccggtgg 243 |||| || ||||||| || |||||||||||||||||||| | ||||||||||| Sbjct: 1081 acctggacgaacacttcccgatcaacttcgccttcttcgacggcggctcaacgccggtga 1140 Query: 244 tcgacggcgtcaacacgtacaccaacgtgttcgacgccaacttcgacacgctggtgtccg 303 |||||||| || || ||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1141 acgacggcggcatcatgtacaccaacgtgttcgacgccaacttcgacacgctggttgccg 1200 Query: 304 cgctggccgccgtcggncacggngacctgcccatcatcatcggcgaggncggctggccga 363 |||| |||||||| ||||| ||| |||| |||||| ||||||||| ||| ||||||| Sbjct: 1201 cgctcaaggccgtcgggcacggcgacatgccgatcatcgtcggcgaggtcgggtggccga 1260 Query: 364 cggacggcgac 374 ||||||||||| Sbjct: 1261 cggacggcgac 1271 Score = 50.1 bits (25), Expect = 0.005 Identities = 31/33 (93%) Strand = Plus / Plus Query: 8 gatcaaggccaccgtgccgctcaacgccgacgt 40 ||||||||||||||| || |||||||||||||| Sbjct: 917 gatcaaggccaccgtccctctcaacgccgacgt 949
>gb|AF466201.1| Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds Length = 100773 Score = 141 bits (71), Expect = 2e-30 Identities = 182/219 (83%) Strand = Plus / Minus Query: 9 atcaaggccaccgtgccgctcaacgccgacgtctacaactcgccctccgccaacccggtg 68 |||||||||||||||||||| ||||||||||| |||||||| ||| | | | |||| Sbjct: 43617 atcaaggccaccgtgccgctgaacgccgacgtgtacaactcccccacggagagcccgtac 43558 Query: 69 ccgtcggcaggccggttccggacggacgtcacccagctcatgacgcagatggtgcagttc 128 |||||||| || ||||||||| ||||| || || | ||||||||| |||| ||||||||| Sbjct: 43557 ccgtcggcggggcggttccggtcggacatcgccgacctcatgacggagatcgtgcagttc 43498 Query: 129 ctggccaacaacagcgcgccattcaccgtcaacatctacccctacctcagcctctacctc 188 ||| | | | | ||||||| |||||||||||||||||||| | ||| ||||||||| | Sbjct: 43497 ctgaaccagagcggcgcgcccttcaccgtcaacatctacccgttcctgagcctctacgac 43438 Query: 189 agcgccgacttccccgtcgacttcgccttcttcgacggc 227 |||| ||||||||| | |||| |||||||||||||||| Sbjct: 43437 agcgacgacttcccgctggactacgccttcttcgacggc 43399 Score = 99.6 bits (50), Expect = 6e-18 Identities = 53/54 (98%) Strand = Plus / Minus Query: 260 gtacaccaacgtgttcgacgccaacttcgacacgctggtgtccgcgctggccgc 313 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 43360 gtacaccaacgtgttcgacgccaacttcgacacgctggtgtccgcgctcgccgc 43307
>ref|XM_469078.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1753 Score = 117 bits (59), Expect = 3e-23 Identities = 179/219 (81%) Strand = Plus / Plus Query: 9 atcaaggccaccgtgccgctcaacgccgacgtctacaactcgccctccgccaacccggtg 68 |||||||||||||||||||| ||||||||||| ||||||||||| || | |||| Sbjct: 500 atcaaggccaccgtgccgctgaacgccgacgtgtacaactcgccggagaacatgcaggtg 559 Query: 69 ccgtcggcaggccggttccggacggacgtcacccagctcatgacgcagatggtgcagttc 128 |||||||| || |||||||| ||||| || || ||| |||||| |||| ||||||||| Sbjct: 560 ccgtcggcggggaggttccggccggacatcgccgggctgatgacggagatcgtgcagttc 619 Query: 129 ctggccaacaacagcgcgccattcaccgtcaacatctacccctacctcagcctctacctc 188 ||| | | | | ||||||| |||||||||||||||||||||| ||| ||||| ||| | Sbjct: 620 ctgaaccagagcggcgcgcccttcaccgtcaacatctaccccttcctgagcctgtacggc 679 Query: 189 agcgccgacttccccgtcgacttcgccttcttcgacggc 227 | || | ||||||| |||||| |||||||||||||||| Sbjct: 680 aacgacaacttcccgctcgactacgccttcttcgacggc 718 Score = 99.6 bits (50), Expect = 6e-18 Identities = 98/115 (85%) Strand = Plus / Plus Query: 260 gtacaccaacgtgttcgacgccaacttcgacacgctggtgtccgcgctggccgccgtcgg 319 |||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||| Sbjct: 754 gtacaccaacgtgttcgacgccaacttcgacacgctcgtgtcggcgctggtcgccgccgg 813 Query: 320 ncacggngacctgcccatcatcatcggcgaggncggctggccgacggacggcgac 374 ||| | ||| ||| || || ||||||||| ||| ||||| || ||||||||| Sbjct: 814 cgtcgggggcctccccgtcgtcgtcggcgaggtcgggtggccaaccgacggcgac 868
>gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence Length = 152828 Score = 117 bits (59), Expect = 3e-23 Identities = 179/219 (81%) Strand = Plus / Minus Query: 9 atcaaggccaccgtgccgctcaacgccgacgtctacaactcgccctccgccaacccggtg 68 |||||||||||||||||||| ||||||||||| ||||||||||| || | |||| Sbjct: 104009 atcaaggccaccgtgccgctgaacgccgacgtgtacaactcgccggagaacatgcaggtg 103950 Query: 69 ccgtcggcaggccggttccggacggacgtcacccagctcatgacgcagatggtgcagttc 128 |||||||| || |||||||| ||||| || || ||| |||||| |||| ||||||||| Sbjct: 103949 ccgtcggcggggaggttccggccggacatcgccgggctgatgacggagatcgtgcagttc 103890 Query: 129 ctggccaacaacagcgcgccattcaccgtcaacatctacccctacctcagcctctacctc 188 ||| | | | | ||||||| |||||||||||||||||||||| ||| ||||| ||| | Sbjct: 103889 ctgaaccagagcggcgcgcccttcaccgtcaacatctaccccttcctgagcctgtacggc 103830 Query: 189 agcgccgacttccccgtcgacttcgccttcttcgacggc 227 | || | ||||||| |||||| |||||||||||||||| Sbjct: 103829 aacgacaacttcccgctcgactacgccttcttcgacggc 103791 Score = 99.6 bits (50), Expect = 6e-18 Identities = 98/115 (85%) Strand = Plus / Minus Query: 260 gtacaccaacgtgttcgacgccaacttcgacacgctggtgtccgcgctggccgccgtcgg 319 |||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||| Sbjct: 103755 gtacaccaacgtgttcgacgccaacttcgacacgctcgtgtcggcgctggtcgccgccgg 103696 Query: 320 ncacggngacctgcccatcatcatcggcgaggncggctggccgacggacggcgac 374 ||| | ||| ||| || || ||||||||| ||| ||||| || ||||||||| Sbjct: 103695 cgtcgggggcctccccgtcgtcgtcggcgaggtcgggtggccaaccgacggcgac 103641
>dbj|AK069506.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019N22, full insert sequence Length = 1811 Score = 117 bits (59), Expect = 3e-23 Identities = 179/219 (81%) Strand = Plus / Plus Query: 9 atcaaggccaccgtgccgctcaacgccgacgtctacaactcgccctccgccaacccggtg 68 |||||||||||||||||||| ||||||||||| ||||||||||| || | |||| Sbjct: 547 atcaaggccaccgtgccgctgaacgccgacgtgtacaactcgccggagaacatgcaggtg 606 Query: 69 ccgtcggcaggccggttccggacggacgtcacccagctcatgacgcagatggtgcagttc 128 |||||||| || |||||||| ||||| || || ||| |||||| |||| ||||||||| Sbjct: 607 ccgtcggcggggaggttccggccggacatcgccgggctgatgacggagatcgtgcagttc 666 Query: 129 ctggccaacaacagcgcgccattcaccgtcaacatctacccctacctcagcctctacctc 188 ||| | | | | ||||||| |||||||||||||||||||||| ||| ||||| ||| | Sbjct: 667 ctgaaccagagcggcgcgcccttcaccgtcaacatctaccccttcctgagcctgtacggc 726 Query: 189 agcgccgacttccccgtcgacttcgccttcttcgacggc 227 | || | ||||||| |||||| |||||||||||||||| Sbjct: 727 aacgacaacttcccgctcgactacgccttcttcgacggc 765 Score = 99.6 bits (50), Expect = 6e-18 Identities = 98/115 (85%) Strand = Plus / Plus Query: 260 gtacaccaacgtgttcgacgccaacttcgacacgctggtgtccgcgctggccgccgtcgg 319 |||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||| Sbjct: 801 gtacaccaacgtgttcgacgccaacttcgacacgctcgtgtcggcgctggtcgccgccgg 860 Query: 320 ncacggngacctgcccatcatcatcggcgaggncggctggccgacggacggcgac 374 ||| | ||| ||| || || ||||||||| ||| ||||| || ||||||||| Sbjct: 861 cgtcgggggcctccccgtcgtcgtcggcgaggtcgggtggccaaccgacggcgac 915
>gb|AC133218.3| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0549G05, complete sequence Length = 147182 Score = 87.7 bits (44), Expect = 2e-14 Identities = 47/48 (97%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgccaacttcgacacgctggtgtccgcgctg 308 ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 58404 tacaccaacgtgttcgacgccaacttcgacacgctggtgtcggcgctg 58451 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 142 gcgcgccattcaccgtcaacatctacccctacctcagcctctacctcagcgccgacttcc 201 ||||||| |||| |||||||||||||||| ||||||||||||| || || |||||||| Sbjct: 58279 gcgcgccgctcacagtcaacatctaccccttcctcagcctctacggcaacgacgacttcc 58338 Query: 202 ccgtcgacttcgccttcttcgacggc 227 | |||||| |||||||||||||||| Sbjct: 58339 cgctcgactacgccttcttcgacggc 58364 Score = 52.0 bits (26), Expect = 0.001 Identities = 31/33 (93%) Strand = Plus / Plus Query: 342 atcggcgaggncggctggccgacggacggcgac 374 |||||||||| ||| |||||||||||||||||| Sbjct: 58485 atcggcgaggtcgggtggccgacggacggcgac 58517 Score = 50.1 bits (25), Expect = 0.005 Identities = 58/69 (84%) Strand = Plus / Plus Query: 8 gatcaaggccaccgtgccgctcaacgccgacgtctacaactcgccctccgccaacccggt 67 ||||||||| || |||||| | ||||||||||| ||| ||||||| | ||||||||| Sbjct: 58145 gatcaaggcgacggtgccggtgaacgccgacgtgtacgactcgccggcgagcaacccggt 58204 Query: 68 gccgtcggc 76 ||||||||| Sbjct: 58205 gccgtcggc 58213
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 87.7 bits (44), Expect = 2e-14 Identities = 47/48 (97%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgccaacttcgacacgctggtgtccgcgctg 308 ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 20936792 tacaccaacgtgttcgacgccaacttcgacacgctggtgtcggcgctg 20936839 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 142 gcgcgccattcaccgtcaacatctacccctacctcagcctctacctcagcgccgacttcc 201 ||||||| |||| |||||||||||||||| ||||||||||||| || || |||||||| Sbjct: 20936667 gcgcgccgctcacagtcaacatctaccccttcctcagcctctacggcaacgacgacttcc 20936726 Query: 202 ccgtcgacttcgccttcttcgacggc 227 | |||||| |||||||||||||||| Sbjct: 20936727 cgctcgactacgccttcttcgacggc 20936752 Score = 52.0 bits (26), Expect = 0.001 Identities = 31/33 (93%) Strand = Plus / Plus Query: 342 atcggcgaggncggctggccgacggacggcgac 374 |||||||||| ||| |||||||||||||||||| Sbjct: 20936873 atcggcgaggtcgggtggccgacggacggcgac 20936905 Score = 50.1 bits (25), Expect = 0.005 Identities = 58/69 (84%) Strand = Plus / Plus Query: 8 gatcaaggccaccgtgccgctcaacgccgacgtctacaactcgccctccgccaacccggt 67 ||||||||| || |||||| | ||||||||||| ||| ||||||| | ||||||||| Sbjct: 20936533 gatcaaggcgacggtgccggtgaacgccgacgtgtacgactcgccggcgagcaacccggt 20936592 Query: 68 gccgtcggc 76 ||||||||| Sbjct: 20936593 gccgtcggc 20936601
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 87.7 bits (44), Expect = 2e-14 Identities = 47/48 (97%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgccaacttcgacacgctggtgtccgcgctg 308 ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 21247027 tacaccaacgtgttcgacgccaacttcgacacgctggtgtcggcgctg 21247074 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 142 gcgcgccattcaccgtcaacatctacccctacctcagcctctacctcagcgccgacttcc 201 ||||||| |||| |||||||||||||||| ||||||||||||| || || |||||||| Sbjct: 21246902 gcgcgccgctcacagtcaacatctaccccttcctcagcctctacggcaacgacgacttcc 21246961 Query: 202 ccgtcgacttcgccttcttcgacggc 227 | |||||| |||||||||||||||| Sbjct: 21246962 cgctcgactacgccttcttcgacggc 21246987 Score = 52.0 bits (26), Expect = 0.001 Identities = 31/33 (93%) Strand = Plus / Plus Query: 342 atcggcgaggncggctggccgacggacggcgac 374 |||||||||| ||| |||||||||||||||||| Sbjct: 21247108 atcggcgaggtcgggtggccgacggacggcgac 21247140 Score = 50.1 bits (25), Expect = 0.005 Identities = 58/69 (84%) Strand = Plus / Plus Query: 8 gatcaaggccaccgtgccgctcaacgccgacgtctacaactcgccctccgccaacccggt 67 ||||||||| || |||||| | ||||||||||| ||| ||||||| | ||||||||| Sbjct: 21246768 gatcaaggcgacggtgccggtgaacgccgacgtgtacgactcgccggcgagcaacccggt 21246827 Query: 68 gccgtcggc 76 ||||||||| Sbjct: 21246828 gccgtcggc 21246836
>gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bin: 5.00, complete sequence Length = 50000 Score = 73.8 bits (37), Expect = 4e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 259 cgtacaccaacgtgttcgacgccaacttcgacacgctggtg 299 |||||||||||||||||||||||||||||||||| |||||| Sbjct: 32567 cgtacaccaacgtgttcgacgccaacttcgacaccctggtg 32527 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Minus Query: 12 aaggccaccgtgccgctcaacgccgacgtctaca 45 ||||||||||| ||||| ||||||||||| |||| Sbjct: 32830 aaggccaccgtcccgctgaacgccgacgtgtaca 32797
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 73.8 bits (37), Expect = 4e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 155 cgtcaacatctacccctacctcagcctctacctcagcgccgacttccccgtcgacttcgc 214 ||||||||||||||||| ||||||||| |||| |||| ||||||||| |||| ||||| Sbjct: 22804606 cgtcaacatctaccccttcctcagcctgtaccagagcgacgacttcccgttcgagttcgc 22804547 Query: 215 cttcttcgacggc 227 |||| |||||||| Sbjct: 22804546 cttcgtcgacggc 22804534 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 265 ccaacgtgttcgacgccaacttcgacacgctggtgtccgcgctg 308 ||||||||||||||||||||| |||||||||||| |||||||| Sbjct: 22804496 ccaacgtgttcgacgccaactacgacacgctggtcaccgcgctg 22804453 Score = 50.1 bits (25), Expect = 0.005 Identities = 30/32 (93%) Strand = Plus / Minus Query: 343 tcggcgaggncggctggccgacggacggcgac 374 ||||||||| |||||||||||| ||||||||| Sbjct: 22804418 tcggcgaggtcggctggccgaccgacggcgac 22804387
>dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0633E08 Length = 136471 Score = 73.8 bits (37), Expect = 4e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 155 cgtcaacatctacccctacctcagcctctacctcagcgccgacttccccgtcgacttcgc 214 ||||||||||||||||| ||||||||| |||| |||| ||||||||| |||| ||||| Sbjct: 91557 cgtcaacatctaccccttcctcagcctgtaccagagcgacgacttcccgttcgagttcgc 91498 Query: 215 cttcttcgacggc 227 |||| |||||||| Sbjct: 91497 cttcgtcgacggc 91485 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 265 ccaacgtgttcgacgccaacttcgacacgctggtgtccgcgctg 308 ||||||||||||||||||||| |||||||||||| |||||||| Sbjct: 91447 ccaacgtgttcgacgccaactacgacacgctggtcaccgcgctg 91404 Score = 50.1 bits (25), Expect = 0.005 Identities = 30/32 (93%) Strand = Plus / Minus Query: 343 tcggcgaggncggctggccgacggacggcgac 374 ||||||||| |||||||||||| ||||||||| Sbjct: 91369 tcggcgaggtcggctggccgaccgacggcgac 91338
>dbj|AK101025.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150D21, full insert sequence Length = 1685 Score = 73.8 bits (37), Expect = 4e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 155 cgtcaacatctacccctacctcagcctctacctcagcgccgacttccccgtcgacttcgc 214 ||||||||||||||||| ||||||||| |||| |||| ||||||||| |||| ||||| Sbjct: 693 cgtcaacatctaccccttcctcagcctgtaccagagcgacgacttcccgttcgagttcgc 752 Query: 215 cttcttcgacggc 227 |||| |||||||| Sbjct: 753 cttcgtcgacggc 765 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 265 ccaacgtgttcgacgccaacttcgacacgctggtgtccgcgctg 308 ||||||||||||||||||||| |||||||||||| |||||||| Sbjct: 803 ccaacgtgttcgacgccaactacgacacgctggtcaccgcgctg 846 Score = 50.1 bits (25), Expect = 0.005 Identities = 30/32 (93%) Strand = Plus / Plus Query: 343 tcggcgaggncggctggccgacggacggcgac 374 ||||||||| |||||||||||| ||||||||| Sbjct: 881 tcggcgaggtcggctggccgaccgacggcgac 912
>ref|XM_470875.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1479 Score = 63.9 bits (32), Expect = 3e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 260 gtacaccaacgtgttcgacgccaacttcgacacgct 295 |||||||||||||||||||||||||| ||||||||| Sbjct: 732 gtacaccaacgtgttcgacgccaactacgacacgct 767 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Plus Query: 17 caccgtgccgctcaacgccgacgtctac 44 |||||| ||||||||||||||||||||| Sbjct: 480 caccgtcccgctcaacgccgacgtctac 507
>gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0087G11, complete sequence Length = 169728 Score = 63.9 bits (32), Expect = 3e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 260 gtacaccaacgtgttcgacgccaacttcgacacgct 295 |||||||||||||||||||||||||| ||||||||| Sbjct: 140497 gtacaccaacgtgttcgacgccaactacgacacgct 140462 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 17 caccgtgccgctcaacgccgacgtctac 44 |||||| ||||||||||||||||||||| Sbjct: 140749 caccgtcccgctcaacgccgacgtctac 140722
>gb|BT018501.1| Zea mays clone EL01N0427D08.d mRNA sequence Length = 1911 Score = 52.0 bits (26), Expect = 0.001 Identities = 62/74 (83%) Strand = Plus / Plus Query: 150 ttcaccgtcaacatctacccctacctcagcctctacctcagcgccgacttccccgtcgac 209 |||||||||||||||||||| | | | ||||||||| || | | |||||||||| ||| Sbjct: 897 ttcaccgtcaacatctacccgttcataagcctctacatcgacccgaacttccccgtggac 956 Query: 210 ttcgccttcttcga 223 | |||||||||||| Sbjct: 957 tacgccttcttcga 970 Score = 48.1 bits (24), Expect = 0.020 Identities = 41/47 (87%) Strand = Plus / Plus Query: 328 acctgcccatcatcatcggcgaggncggctggccgacggacggcgac 374 |||||||| | ||| |||||||| ||| |||||||||||||||||| Sbjct: 1075 acctgcccgtgatcgtcggcgagatcgggtggccgacggacggcgac 1121
>gb|BT018181.1| Zea mays clone EL01N0557H05.c mRNA sequence Length = 1118 Score = 52.0 bits (26), Expect = 0.001 Identities = 62/74 (83%) Strand = Plus / Plus Query: 150 ttcaccgtcaacatctacccctacctcagcctctacctcagcgccgacttccccgtcgac 209 |||||||||||||||||||| | | | ||||||||| || | | |||||||||| ||| Sbjct: 276 ttcaccgtcaacatctacccgttcataagcctctacatcgacccgaacttccccgtggac 335 Query: 210 ttcgccttcttcga 223 | |||||||||||| Sbjct: 336 tacgccttcttcga 349 Score = 48.1 bits (24), Expect = 0.020 Identities = 41/47 (87%) Strand = Plus / Plus Query: 328 acctgcccatcatcatcggcgaggncggctggccgacggacggcgac 374 |||||||| | ||| |||||||| ||| |||||||||||||||||| Sbjct: 454 acctgcccgtgatcgtcggcgagatcgggtggccgacggacggcgac 500
>gb|AY107843.2| Zea mays PCO081831 mRNA sequence Length = 1428 Score = 52.0 bits (26), Expect = 0.001 Identities = 62/74 (83%) Strand = Plus / Plus Query: 150 ttcaccgtcaacatctacccctacctcagcctctacctcagcgccgacttccccgtcgac 209 |||||||||||||||||||| | | | ||||||||| || | | |||||||||| ||| Sbjct: 401 ttcaccgtcaacatctacccgttcataagcctctacatcgacccgaacttccccgtggac 460 Query: 210 ttcgccttcttcga 223 | |||||||||||| Sbjct: 461 tacgccttcttcga 474 Score = 48.1 bits (24), Expect = 0.020 Identities = 41/47 (87%) Strand = Plus / Plus Query: 328 acctgcccatcatcatcggcgaggncggctggccgacggacggcgac 374 |||||||| | ||| |||||||| ||| |||||||||||||||||| Sbjct: 579 acctgcccgtgatcgtcggcgagatcgggtggccgacggacggcgac 625
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Plus Query: 49 cgccctccgccaacccggtgccgtcggc 76 ||||||||||| |||||||||||||||| Sbjct: 517539 cgccctccgcccacccggtgccgtcggc 517566 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 gccaccgtgccgctcaacgcc 35 ||||||||||||||||||||| Sbjct: 5801316 gccaccgtgccgctcaacgcc 5801336 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 49 cgccctccgccaacccggtgccgtcggca 77 ||||||||||| | ||||||||||||||| Sbjct: 3586321 cgccctccgcccagccggtgccgtcggca 3586349 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 ggtgtccgcgctggccgccgtcgg 319 |||| ||||||||||||||||||| Sbjct: 6777242 ggtggccgcgctggccgccgtcgg 6777265
>dbj|AB070949.1| Streptomyces avermitilis polyene macrolide biosynthetic gene cluster Length = 78210 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 49 cgccctccgccaacccggtgccgtcggc 76 ||||||||||| |||||||||||||||| Sbjct: 47319 cgccctccgcccacccggtgccgtcggc 47292
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 46.1 bits (23), Expect = 0.081 Identities = 31/34 (91%) Strand = Plus / Minus Query: 332 gcccatcatcatcggcgaggncggctggccgacg 365 ||||||| | |||||||||| ||||||||||||| Sbjct: 2750890 gcccatcctgatcggcgaggccggctggccgacg 2750857
>gb|AC119291.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052K01, complete sequence Length = 144395 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 294 ctggtgtccgcgctggccgccg 315 |||||||||||||||||||||| Sbjct: 44248 ctggtgtccgcgctggccgccg 44269
>ref|NM_190937.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1014 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 257 cacgtacaccaacgtgttcgacgcca 282 ||||||||||||| |||||||||||| Sbjct: 684 cacgtacaccaacatgttcgacgcca 709
>emb|AL590416.4| Human DNA sequence from clone RP11-89C21 on chromosome 10p13-14 Contains the 3' end of the gene for a protein related to the N terminus of tre (RNTRE) (KIAA0019), gene FLJ34168, a novel gene and a CpG island, complete sequence Length = 171026 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 170 ctacctcagcctctacctcagc 191 |||||||||||||||||||||| Sbjct: 120620 ctacctcagcctctacctcagc 120641
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 294 ctggtgtccgcgctggccgccg 315 |||||||||||||||||||||| Sbjct: 26530773 ctggtgtccgcgctggccgccg 26530794
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 257 cacgtacaccaacgtgttcgacgcca 282 ||||||||||||| |||||||||||| Sbjct: 33943171 cacgtacaccaacatgttcgacgcca 33943146
>gb|U72253.1|OSU72253 Oryza sativa beta-1,3-glucanase precursor (Gns7) gene, complete cds Length = 2813 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 257 cacgtacaccaacgtgttcgacgcca 282 ||||||||||||| |||||||||||| Sbjct: 2483 cacgtacaccaacatgttcgacgcca 2508
>dbj|AP003221.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0003D09 Length = 161970 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 257 cacgtacaccaacgtgttcgacgcca 282 ||||||||||||| |||||||||||| Sbjct: 74614 cacgtacaccaacatgttcgacgcca 74589
>dbj|AK099192.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110B18, full insert sequence Length = 1283 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 257 cacgtacaccaacgtgttcgacgcca 282 ||||||||||||| |||||||||||| Sbjct: 761 cacgtacaccaacatgttcgacgcca 786
>dbj|AK060529.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-H06, full insert sequence Length = 1288 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 257 cacgtacaccaacgtgttcgacgcca 282 ||||||||||||| |||||||||||| Sbjct: 762 cacgtacaccaacatgttcgacgcca 787
>ref|XM_480764.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2162 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 272 gttcgacgccaacttcgacacgctggtgtccgcgctg 308 ||||||||||||| ||||||||||||| | |||||| Sbjct: 1273 gttcgacgccaaccacgacacgctggtggcggcgctg 1309 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 gtgccgctcaacgccgacgt 40 |||||||||||||||||||| Sbjct: 1028 gtgccgctcaacgccgacgt 1047
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 atggtgcagttcctggccaac 137 ||||||||||||||||||||| Sbjct: 1969806 atggtgcagttcctggccaac 1969786
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 cgacgccaacttcgacacgct 295 ||||||||||||||||||||| Sbjct: 4104020 cgacgccaacttcgacacgct 4104000
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 272 gttcgacgccaacttcgacacgctggtgtccgcgctg 308 ||||||||||||| ||||||||||||| | |||||| Sbjct: 7581101 gttcgacgccaaccacgacacgctggtggcggcgctg 7581137 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 gtgccgctcaacgccgacgt 40 |||||||||||||||||||| Sbjct: 7580612 gtgccgctcaacgccgacgt 7580631
>dbj|AP003799.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1006_H01 Length = 113769 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 272 gttcgacgccaacttcgacacgctggtgtccgcgctg 308 ||||||||||||| ||||||||||||| | |||||| Sbjct: 108182 gttcgacgccaaccacgacacgctggtggcggcgctg 108218 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 gtgccgctcaacgccgacgt 40 |||||||||||||||||||| Sbjct: 107693 gtgccgctcaacgccgacgt 107712
>dbj|AP004751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0494D11 Length = 149198 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 272 gttcgacgccaacttcgacacgctggtgtccgcgctg 308 ||||||||||||| ||||||||||||| | |||||| Sbjct: 6296 gttcgacgccaaccacgacacgctggtggcggcgctg 6332 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 gtgccgctcaacgccgacgt 40 |||||||||||||||||||| Sbjct: 5807 gtgccgctcaacgccgacgt 5826
>dbj|AK106897.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-H02, full insert sequence Length = 2162 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 272 gttcgacgccaacttcgacacgctggtgtccgcgctg 308 ||||||||||||| ||||||||||||| | |||||| Sbjct: 1273 gttcgacgccaaccacgacacgctggtggcggcgctg 1309 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 gtgccgctcaacgccgacgt 40 |||||||||||||||||||| Sbjct: 1028 gtgccgctcaacgccgacgt 1047
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 15 gccaccgtgccgctcaacgccgacg 39 |||||||||||||||| |||||||| Sbjct: 1446612 gccaccgtgccgctcatcgccgacg 1446588 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 gctggtgtccgcgctggccg 312 |||||||||||||||||||| Sbjct: 1297448 gctggtgtccgcgctggccg 1297467
>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster Length = 104326 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 49 cgccctccgccaacccggtgccgtcggca 77 ||||||||||| | ||||||||||||||| Sbjct: 51484 cgccctccgcccagccggtgccgtcggca 51456
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 agatggtgcagttcctggccaaca 138 ||||||||||||||| |||||||| Sbjct: 713205 agatggtgcagttccaggccaaca 713182
>ref|XM_478344.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2037 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgc 280 |||||||||||||||||||| Sbjct: 789 tacaccaacgtgttcgacgc 808
>ref|XM_478343.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1743 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgc 280 |||||||||||||||||||| Sbjct: 808 tacaccaacgtgttcgacgc 827
>ref|XM_506361.1| PREDICTED Oryza sativa (japonica cultivar-group), P0409B11.17-1 mRNA Length = 1804 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgc 280 |||||||||||||||||||| Sbjct: 837 tacaccaacgtgttcgacgc 856
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 cggtgccgtcggcaggccggttcc 87 |||||| ||||||||||||||||| Sbjct: 2672292 cggtgcagtcggcaggccggttcc 2672315
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cgtgttcgacgccaacttcg 288 |||||||||||||||||||| Sbjct: 5814515 cgtgttcgacgccaacttcg 5814496
>ref|XM_546320.2| PREDICTED: Canis familiaris similar to chondroitin sulfate proteoglycan 4 (LOC489202), mRNA Length = 7299 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 cagttcctggccaacaacag 142 |||||||||||||||||||| Sbjct: 4070 cagttcctggccaacaacag 4089
>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete sequence Length = 146568 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgc 280 |||||||||||||||||||| Sbjct: 20815 tacaccaacgtgttcgacgc 20834
>emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosynthetic gene cluster Length = 84985 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 49 cgccctccgccaacccggtgccgtcggc 76 ||||||||| | |||||||||||||||| Sbjct: 14379 cgccctccgaccacccggtgccgtcggc 14406
>emb|CR354603.12| Zebrafish DNA sequence from clone CH211-106J11 in linkage group 24, complete sequence Length = 159582 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 catctacccctacctcagcc 180 |||||||||||||||||||| Sbjct: 81410 catctacccctacctcagcc 81429
>emb|AJ514261.1|PST514261 Pseudomonas stutzeri hmpA gene, ORF77 and ORF3 (partial) Length = 2011 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 atcaaggccaccgtgccgct 28 |||||||||||||||||||| Sbjct: 345 atcaaggccaccgtgccgct 364
>gb|AY599911.1| Afipia sp. SP3302452 RNA polymerase beta subunit (rpoB) gene, complete cds Length = 4119 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 tcgcaacgccggtggtcgacggcg 252 |||||||||||||| ||||||||| Sbjct: 3599 tcgcaacgccggtgttcgacggcg 3622
>gb|AY217745.1| Oryza sativa (indica cultivar-group) putative beta 1-3-glucanase (Bg) mRNA, partial cds Length = 709 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgc 280 |||||||||||||||||||| Sbjct: 94 tacaccaacgtgttcgacgc 113
>gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024O21, complete sequence Length = 155651 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgc 280 |||||||||||||||||||| Sbjct: 153897 tacaccaacgtgttcgacgc 153916
>dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0409B11 Length = 168354 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgc 280 |||||||||||||||||||| Sbjct: 74040 tacaccaacgtgttcgacgc 74059
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 gccttcttcgacggcctcgc 232 |||||||||||||||||||| Sbjct: 3955350 gccttcttcgacggcctcgc 3955331
>dbj|AK119620.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-H02, full insert sequence Length = 2049 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgc 280 |||||||||||||||||||| Sbjct: 951 tacaccaacgtgttcgacgc 970
>dbj|AK109516.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-H10, full insert sequence Length = 1838 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgc 280 |||||||||||||||||||| Sbjct: 731 tacaccaacgtgttcgacgc 750
>dbj|AK103138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033120F09, full insert sequence Length = 2075 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgc 280 |||||||||||||||||||| Sbjct: 977 tacaccaacgtgttcgacgc 996
>dbj|AK101250.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032E23, full insert sequence Length = 1742 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgc 280 |||||||||||||||||||| Sbjct: 807 tacaccaacgtgttcgacgc 826
>dbj|AK069383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013E15, full insert sequence Length = 2037 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgc 280 |||||||||||||||||||| Sbjct: 789 tacaccaacgtgttcgacgc 808
>dbj|AK063956.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G01, full insert sequence Length = 1804 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tacaccaacgtgttcgacgc 280 |||||||||||||||||||| Sbjct: 837 tacaccaacgtgttcgacgc 856
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 229 tcgcaacgccggtggtcgacggcg 252 |||||||||||||| ||||||||| Sbjct: 402382 tcgcaacgccggtgttcgacggcg 402359
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 cgccggtggtcgacggcgtc 254 |||||||||||||||||||| Sbjct: 3641455 cgccggtggtcgacggcgtc 3641436
>gb|U96096.1|HVU96096 Hordeum vulgare endo-1,3-beta-glucanase (Hv34) gene, partial cds Length = 2899 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 189 agcgccgacttccccgtcgacttcgcct 216 ||||||| || ||||||||||||||||| Sbjct: 2653 agcgccgtctaccccgtcgacttcgcct 2680
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 tcatgacgcagatggtgcagttcc 129 |||||| ||||||||||||||||| Sbjct: 5866316 tcatgatgcagatggtgcagttcc 5866339 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,580,331 Number of Sequences: 3902068 Number of extensions: 2580331 Number of successful extensions: 70676 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68837 Number of HSP's gapped (non-prelim): 1813 length of query: 374 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 352 effective length of database: 17,147,199,772 effective search space: 6035814319744 effective search space used: 6035814319744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
