| Clone Name | baet71b12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Plus Query: 208 ttccatccccatcattgcagccttt 232 ||||||||||||||||||||||||| Sbjct: 21599945 ttccatccccatcattgcagccttt 21599969
>dbj|AP004235.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0006G05 Length = 56865 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Plus Query: 208 ttccatccccatcattgcagccttt 232 ||||||||||||||||||||||||| Sbjct: 46319 ttccatccccatcattgcagccttt 46343
>dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1612_A04 Length = 124833 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Plus Query: 208 ttccatccccatcattgcagccttt 232 ||||||||||||||||||||||||| Sbjct: 30401 ttccatccccatcattgcagccttt 30425
>emb|AL590627.25| Human DNA sequence from clone RP13-467E5 on chromosome 9 Contains a pseudogene similar to part of SET translocation (myeloid leukemia-associated) (SET), the 5' end of the gene for euchromatic histone methyltransferase 1 (FLJ12879, KIAA1876) (Eu-HMTase1) and two CpG islands, complete sequence Length = 166141 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 53 tggcattgaccactcatcagga 74 |||||||||||||||||||||| Sbjct: 47238 tggcattgaccactcatcagga 47259
>gb|AC120555.9| Mus musculus chromosome 12, clone RP24-311D18, complete sequence Length = 164820 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 185 gccatcccctttgtgcttgct 205 ||||||||||||||||||||| Sbjct: 10060 gccatcccctttgtgcttgct 10080
>gb|AC123620.14| Mus musculus chromosome 12, clone RP23-53J21, complete sequence Length = 182783 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 185 gccatcccctttgtgcttgct 205 ||||||||||||||||||||| Sbjct: 143414 gccatcccctttgtgcttgct 143434
>ref|XM_468382.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1327 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ggcagcttcggcttgggctt 150 |||||||||||||||||||| Sbjct: 727 ggcagcttcggcttgggctt 708
>ref|XM_507042.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1293_E04.28 mRNA Length = 1332 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ggcagcttcggcttgggctt 150 |||||||||||||||||||| Sbjct: 728 ggcagcttcggcttgggctt 709
>ref|XM_874397.1| PREDICTED: Bos taurus similar to splicing factor, arginine/serine-rich 12, transcript variant 9 (LOC507801), mRNA Length = 2478 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggcagcttcggcttgggctt 150 |||||||||||||||||||| Sbjct: 92 ggcagcttcggcttgggctt 111
>ref|XM_874322.1| PREDICTED: Bos taurus similar to splicing factor, arginine/serine-rich 12, transcript variant 8 (LOC507801), mRNA Length = 2467 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggcagcttcggcttgggctt 150 |||||||||||||||||||| Sbjct: 57 ggcagcttcggcttgggctt 76
>ref|XM_874236.1| PREDICTED: Bos taurus similar to splicing factor, arginine/serine-rich 12, transcript variant 7 (LOC507801), mRNA Length = 1207 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggcagcttcggcttgggctt 150 |||||||||||||||||||| Sbjct: 92 ggcagcttcggcttgggctt 111
>ref|XM_874148.1| PREDICTED: Bos taurus similar to splicing factor, arginine/serine-rich 12, transcript variant 6 (LOC507801), mRNA Length = 2449 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggcagcttcggcttgggctt 150 |||||||||||||||||||| Sbjct: 57 ggcagcttcggcttgggctt 76
>ref|XM_873967.1| PREDICTED: Bos taurus similar to splicing factor, arginine/serine-rich 12, transcript variant 5 (LOC507801), mRNA Length = 860 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggcagcttcggcttgggctt 150 |||||||||||||||||||| Sbjct: 57 ggcagcttcggcttgggctt 76
>ref|XM_873871.1| PREDICTED: Bos taurus similar to splicing factor, arginine/serine-rich 12, transcript variant 4 (LOC507801), mRNA Length = 640 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggcagcttcggcttgggctt 150 |||||||||||||||||||| Sbjct: 125 ggcagcttcggcttgggctt 144
>ref|XM_873776.1| PREDICTED: Bos taurus similar to splicing factor, arginine/serine-rich 12, transcript variant 3 (LOC507801), mRNA Length = 562 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggcagcttcggcttgggctt 150 |||||||||||||||||||| Sbjct: 59 ggcagcttcggcttgggctt 78
>ref|XM_864599.1| PREDICTED: Bos taurus similar to splicing factor, arginine/serine-rich 12, transcript variant 2 (LOC507801), mRNA Length = 4002 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggcagcttcggcttgggctt 150 |||||||||||||||||||| Sbjct: 92 ggcagcttcggcttgggctt 111
>ref|XM_323119.1| Neurospora crassa OR74A hypothetical protein (NCU03819.1) partial mRNA Length = 6255 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 cttcggcttgggcttttctt 155 |||||||||||||||||||| Sbjct: 5457 cttcggcttgggcttttctt 5438
>ref|XM_956115.1| Neurospora crassa OR74A hypothetical protein (NCU03819.1) partial mRNA Length = 6255 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 cttcggcttgggcttttctt 155 |||||||||||||||||||| Sbjct: 5457 cttcggcttgggcttttctt 5438
>gb|AC125360.4| Mus musculus BAC clone RP23-58E21 from 12, complete sequence Length = 170040 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 tcctcctttcctgctccagatttg 52 |||| ||||||||||||||||||| Sbjct: 134679 tccttctttcctgctccagatttg 134702
>gb|AC108436.5| Mus musculus chromosome 8, clone RP23-230G11, complete sequence Length = 185534 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 gctcctcctttcctgctcca 46 |||||||||||||||||||| Sbjct: 135269 gctcctcctttcctgctcca 135250
>emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chromosome 9 Contains the 5' end of the SLC24A2 gene for solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 (NCKX2) and a CpG island, complete sequence Length = 159900 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tcctcctttcctgctccaga 48 |||||||||||||||||||| Sbjct: 5167 tcctcctttcctgctccaga 5148
>emb|AL109827.8|HSJ309K20 Human DNA sequence from clone RP1-309K20 on chromosome 20 Contains the 5' end of the FER1L4 gene for fer-1-like 4 (C. elegans), the C20orf124 gene for chromosome 20 open reading frame 124, the SPAG4 gene for sperm associated antigen 4, the CPNE1 gene for copine I, the RBM12 gene for RNA binding motif protein 12, the 3' end of the NIFS gene for nitrogen fixation 1 (S. cerevisiae) and four CpG islands, complete sequence Length = 98599 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ctcctcctttcctgctccag 47 |||||||||||||||||||| Sbjct: 4207 ctcctcctttcctgctccag 4188
>gb|AC162858.6| Mus musculus chromosome 8, clone RP23-117O14, complete sequence Length = 167086 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gctcctcctttcctgctcca 46 |||||||||||||||||||| Sbjct: 8033 gctcctcctttcctgctcca 8052
>emb|BX842617.1| Neurospora crassa DNA linkage group V cosmid clone 82C3 Length = 40661 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 cttcggcttgggcttttctt 155 |||||||||||||||||||| Sbjct: 1414 cttcggcttgggcttttctt 1395
>emb|BX571660.1| Wolinella succinogenes, complete genome; segment 4/7 Length = 349926 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 agcttcggcttgggcttttc 153 |||||||||||||||||||| Sbjct: 180575 agcttcggcttgggcttttc 180556
>emb|AL451018.1|NC99H12 Neurospora crassa DNA linkage group V Cosmid contig 99H12 Length = 85165 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 cttcggcttgggcttttctt 155 |||||||||||||||||||| Sbjct: 71660 cttcggcttgggcttttctt 71641
>gb|AC161626.6| Pan troglodytes BAC clone CH251-114C24 from chromosome unknown, complete sequence Length = 167136 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ctcctcctttcctgctccag 47 |||||||||||||||||||| Sbjct: 57359 ctcctcctttcctgctccag 57340
>ref|NM_169206.1| Drosophila melanogaster grain CG9656-RA (grn), mRNA Length = 3467 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 gtgtgggtggtgccgctgcc 187 |||||||||||||||||||| Sbjct: 1164 gtgtgggtggtgccgctgcc 1145
>gb|AC090877.4| Homo sapiens chromosome 15, clone RP11-758N13, complete sequence Length = 181460 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 ttgggcttttctttctggga 162 |||||||||||||||||||| Sbjct: 71668 ttgggcttttctttctggga 71649
>gb|AY071369.1| Drosophila melanogaster RE40104 full length cDNA Length = 3465 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 gtgtgggtggtgccgctgcc 187 |||||||||||||||||||| Sbjct: 1164 gtgtgggtggtgccgctgcc 1145
>gb|AC010767.7| Homo sapiens chromosome 17, clone RP11-188K10, complete sequence Length = 184952 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 tgggcttttctttctgggag 163 |||||||||||||||||||| Sbjct: 165012 tgggcttttctttctgggag 164993
>gb|AC015943.7| Homo sapiens chromosome 17, clone RP11-581B19, complete sequence Length = 161958 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 tgggcttttctttctgggag 163 |||||||||||||||||||| Sbjct: 97927 tgggcttttctttctgggag 97946
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ggcagcttcggcttgggctt 150 |||||||||||||||||||| Sbjct: 34942307 ggcagcttcggcttgggctt 34942288
>gb|AC008094.5|AC008094 Drosophila melanogaster, chromosome 3R, region 84F-84F, BAC clone BACR45A07, complete sequence Length = 170498 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 gtgtgggtggtgccgctgcc 187 |||||||||||||||||||| Sbjct: 46222 gtgtgggtggtgccgctgcc 46241
>dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643F09 Length = 161001 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ggcagcttcggcttgggctt 150 |||||||||||||||||||| Sbjct: 2648 ggcagcttcggcttgggctt 2629
>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_E04 Length = 118192 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ggcagcttcggcttgggctt 150 |||||||||||||||||||| Sbjct: 101804 ggcagcttcggcttgggctt 101785
>gb|AF092497.1|AF092497 Yarrowia lipolytica squalene synthase (SQS) gene, complete cds Length = 2293 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 tcatcaggaaggactctccc 85 |||||||||||||||||||| Sbjct: 1862 tcatcaggaaggactctccc 1881
>dbj|AK104489.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B08, full insert sequence Length = 1328 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ggcagcttcggcttgggctt 150 |||||||||||||||||||| Sbjct: 727 ggcagcttcggcttgggctt 708
>dbj|AK067252.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098L06, full insert sequence Length = 1332 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ggcagcttcggcttgggctt 150 |||||||||||||||||||| Sbjct: 728 ggcagcttcggcttgggctt 709
>gb|AC078889.20| Homo sapiens 12 BAC RP11-335I12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163992 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 tccagatttgtggcattgaccact 66 |||||||||||| ||||||||||| Sbjct: 110623 tccagatttgtgtcattgaccact 110600
>gb|AE003677.3| Drosophila melanogaster chromosome 3R, section 15 of 118 of the complete sequence Length = 228314 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 gtgtgggtggtgccgctgcc 187 |||||||||||||||||||| Sbjct: 196480 gtgtgggtggtgccgctgcc 196499
>dbj|AP003973.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-89C3, complete sequence Length = 189099 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 cctttgtgcttgctggttcc 211 |||||||||||||||||||| Sbjct: 138103 cctttgtgcttgctggttcc 138084
>gb|AC160565.2| Pan troglodytes BAC clone CH251-539H3 from chromosome unknown, complete sequence Length = 166497 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ctcctcctttcctgctccag 47 |||||||||||||||||||| Sbjct: 158170 ctcctcctttcctgctccag 158151
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tcatcaggaaggactctccc 85 |||||||||||||||||||| Sbjct: 1016169 tcatcaggaaggactctccc 1016150
>dbj|D50542.1|DROGATA Drosophila melanogaster mRNA for GATA transcription factor, complete cds Length = 3112 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 gtgtgggtggtgccgctgcc 187 |||||||||||||||||||| Sbjct: 969 gtgtgggtggtgccgctgcc 950 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,819,646 Number of Sequences: 3902068 Number of extensions: 2819646 Number of successful extensions: 52816 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52716 Number of HSP's gapped (non-prelim): 100 length of query: 287 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 265 effective length of database: 17,147,199,772 effective search space: 4544007939580 effective search space used: 4544007939580 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)