ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet71b08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463383.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1485 Score = 168 bits (85), Expect = 6e-39 Identities = 142/161 (88%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 |||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||| Sbjct: 14 agccactgcacatcctcttcctcccgttcctcgtgcccggccacctcatcccgatcgccg 73 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 ||||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||| Sbjct: 74 acatggccgcgctcttcgcggcacgcggcgtcaggtgcaccatcctcaccacccccgtca 133 Query: 231 acgccgccatcatccgctccgcagtccaccgcgccaacgac 271 | |||||| || ||||| | || || |||||||||||||| Sbjct: 134 atgccgccgtcgtccgccctgccgtggaccgcgccaacgac 174
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 168 bits (85), Expect = 6e-39 Identities = 142/161 (88%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 |||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||| Sbjct: 23452288 agccactgcacatcctcttcctcccgttcctcgtgcccggccacctcatcccgatcgccg 23452347 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 ||||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||| Sbjct: 23452348 acatggccgcgctcttcgcggcacgcggcgtcaggtgcaccatcctcaccacccccgtca 23452407 Query: 231 acgccgccatcatccgctccgcagtccaccgcgccaacgac 271 | |||||| || ||||| | || || |||||||||||||| Sbjct: 23452408 atgccgccgtcgtccgccctgccgtggaccgcgccaacgac 23452448 Score = 159 bits (80), Expect = 6e-36 Identities = 113/124 (91%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 |||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||| Sbjct: 23459869 agccactgcacatcctcttcctcccgttcctcgtgcccggccacctcatcccgatcgccg 23459928 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 ||||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||| Sbjct: 23459929 acatggccgcgctcttcgcggcacgcggcgtcaggtgcaccatcctcaccacccccgtca 23459988 Query: 231 acgc 234 |||| Sbjct: 23459989 acgc 23459992 Score = 151 bits (76), Expect = 2e-33 Identities = 121/136 (88%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 ||||| |||||||||||||||||||||| | || |||||||||||||||| | |||| Sbjct: 25609596 agccgttgcacatcctcttcttcccgtttatcgcgcacggccacctcatcccggtggccg 25609655 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 ||||||||||||| ||||||| ||||||||| ||||| |||||||||||||| ||||||| Sbjct: 25609656 acatggccgcgcttttcgccgcccgcggcgttcggtgtaccatcctcaccacccccgtca 25609715 Query: 231 acgccgccatcatccg 246 |||||||| ||||||| Sbjct: 25609716 acgccgccgtcatccg 25609731 Score = 141 bits (71), Expect = 1e-30 Identities = 140/163 (85%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 |||| |||||||||||||||||||| ||||| || |||| || |||||||||||||||| Sbjct: 25592277 agccactgcacatcctcttcttcccattcctcgcgcccggtcatctcatcccgatcgccg 25592336 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 | |||||||| || ||||||| || |||||| ||||||||||||||||||| || |||| Sbjct: 25592337 atatggccgctctgttcgccgctcgtggcgtcaggtgcaccatcctcaccacccctgtca 25592396 Query: 231 acgccgccatcatccgctccgcagtccaccgcgccaacgactc 273 |||||||| | |||||||| || || |||| ||||||||||| Sbjct: 25592397 acgccgccgtgatccgctcggccgtggaccgtgccaacgactc 25592439 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 216 tcaccacgcccgtcaacgccgc 237 |||||||||||||||||||||| Sbjct: 3915162 tcaccacgcccgtcaacgccgc 3915141
>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025A05 Length = 154298 Score = 168 bits (85), Expect = 6e-39 Identities = 142/161 (88%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 |||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||| Sbjct: 15593 agccactgcacatcctcttcctcccgttcctcgtgcccggccacctcatcccgatcgccg 15652 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 ||||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||| Sbjct: 15653 acatggccgcgctcttcgcggcacgcggcgtcaggtgcaccatcctcaccacccccgtca 15712 Query: 231 acgccgccatcatccgctccgcagtccaccgcgccaacgac 271 | |||||| || ||||| | || || |||||||||||||| Sbjct: 15713 atgccgccgtcgtccgccctgccgtggaccgcgccaacgac 15753 Score = 159 bits (80), Expect = 6e-36 Identities = 113/124 (91%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 |||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||| Sbjct: 23174 agccactgcacatcctcttcctcccgttcctcgtgcccggccacctcatcccgatcgccg 23233 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 ||||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||| Sbjct: 23234 acatggccgcgctcttcgcggcacgcggcgtcaggtgcaccatcctcaccacccccgtca 23293 Query: 231 acgc 234 |||| Sbjct: 23294 acgc 23297
>dbj|AK102671.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033102B03, full insert sequence Length = 1675 Score = 168 bits (85), Expect = 6e-39 Identities = 142/161 (88%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 |||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||| Sbjct: 103 agccactgcacatcctcttcctcccgttcctcgtgcccggccacctcatcccgatcgccg 162 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 ||||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||| Sbjct: 163 acatggccgcgctcttcgcggcacgcggcgtcaggtgcaccatcctcaccacccccgtca 222 Query: 231 acgccgccatcatccgctccgcagtccaccgcgccaacgac 271 | |||||| || ||||| | || || |||||||||||||| Sbjct: 223 atgccgccgtcgtccgccctgccgtggaccgcgccaacgac 263
>dbj|AK063325.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-H06, full insert sequence Length = 1962 Score = 168 bits (85), Expect = 6e-39 Identities = 142/161 (88%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 |||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||| Sbjct: 104 agccactgcacatcctcttcctcccgttcctcgtgcccggccacctcatcccgatcgccg 163 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 ||||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||| Sbjct: 164 acatggccgcgctcttcgcggcacgcggcgtcaggtgcaccatcctcaccacccccgtca 223 Query: 231 acgccgccatcatccgctccgcagtccaccgcgccaacgac 271 | |||||| || ||||| | || || |||||||||||||| Sbjct: 224 atgccgccgtcgtccgccctgccgtggaccgcgccaacgac 264
>gb|DQ123897.1| Zea mays RFLP probe umc63 (CBM 3.09) genomic sequence Length = 881 Score = 161 bits (81), Expect = 2e-36 Identities = 141/161 (87%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 ||||||||||||||||||||||||||||||| || | || ||||||||||||||||||| Sbjct: 425 agccgctgcacatcctcttcttcccgttcctcgcgccggggcacctcatcccgatcgccg 484 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 ||||||||||||||||||| | ||| |||||| ||||||||||||||||||| || || | Sbjct: 485 acatggccgcgctcttcgctgcccgaggcgtcaggtgcaccatcctcaccacaccggtga 544 Query: 231 acgccgccatcatccgctccgcagtccaccgcgccaacgac 271 ||||| |||||||||| || || |||||||||||||| Sbjct: 545 acgcccaactcatccgctcggcggtagaccgcgccaacgac 585
>ref|NM_192249.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1491 Score = 151 bits (76), Expect = 2e-33 Identities = 121/136 (88%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 ||||| |||||||||||||||||||||| | || |||||||||||||||| | |||| Sbjct: 26 agccgttgcacatcctcttcttcccgtttatcgcgcacggccacctcatcccggtggccg 85 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 ||||||||||||| ||||||| ||||||||| ||||| |||||||||||||| ||||||| Sbjct: 86 acatggccgcgcttttcgccgcccgcggcgttcggtgtaccatcctcaccacccccgtca 145 Query: 231 acgccgccatcatccg 246 |||||||| ||||||| Sbjct: 146 acgccgccgtcatccg 161
>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004A09 Length = 158826 Score = 151 bits (76), Expect = 2e-33 Identities = 121/136 (88%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 ||||| |||||||||||||||||||||| | || |||||||||||||||| | |||| Sbjct: 56402 agccgttgcacatcctcttcttcccgtttatcgcgcacggccacctcatcccggtggccg 56461 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 ||||||||||||| ||||||| ||||||||| ||||| |||||||||||||| ||||||| Sbjct: 56462 acatggccgcgcttttcgccgcccgcggcgttcggtgtaccatcctcaccacccccgtca 56521 Query: 231 acgccgccatcatccg 246 |||||||| ||||||| Sbjct: 56522 acgccgccgtcatccg 56537 Score = 141 bits (71), Expect = 1e-30 Identities = 140/163 (85%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 |||| |||||||||||||||||||| ||||| || |||| || |||||||||||||||| Sbjct: 39083 agccactgcacatcctcttcttcccattcctcgcgcccggtcatctcatcccgatcgccg 39142 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 | |||||||| || ||||||| || |||||| ||||||||||||||||||| || |||| Sbjct: 39143 atatggccgctctgttcgccgctcgtggcgtcaggtgcaccatcctcaccacccctgtca 39202 Query: 231 acgccgccatcatccgctccgcagtccaccgcgccaacgactc 273 |||||||| | |||||||| || || |||| ||||||||||| Sbjct: 39203 acgccgccgtgatccgctcggccgtggaccgtgccaacgactc 39245
>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696E01 Length = 194056 Score = 151 bits (76), Expect = 2e-33 Identities = 121/136 (88%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 ||||| |||||||||||||||||||||| | || |||||||||||||||| | |||| Sbjct: 137199 agccgttgcacatcctcttcttcccgtttatcgcgcacggccacctcatcccggtggccg 137258 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 ||||||||||||| ||||||| ||||||||| ||||| |||||||||||||| ||||||| Sbjct: 137259 acatggccgcgcttttcgccgcccgcggcgttcggtgtaccatcctcaccacccccgtca 137318 Query: 231 acgccgccatcatccg 246 |||||||| ||||||| Sbjct: 137319 acgccgccgtcatccg 137334 Score = 141 bits (71), Expect = 1e-30 Identities = 140/163 (85%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 |||| |||||||||||||||||||| ||||| || |||| || |||||||||||||||| Sbjct: 119880 agccactgcacatcctcttcttcccattcctcgcgcccggtcatctcatcccgatcgccg 119939 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 | |||||||| || ||||||| || |||||| ||||||||||||||||||| || |||| Sbjct: 119940 atatggccgctctgttcgccgctcgtggcgtcaggtgcaccatcctcaccacccctgtca 119999 Query: 231 acgccgccatcatccgctccgcagtccaccgcgccaacgactc 273 |||||||| | |||||||| || || |||| ||||||||||| Sbjct: 120000 acgccgccgtgatccgctcggccgtggaccgtgccaacgactc 120042
>ref|NM_192244.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1476 Score = 141 bits (71), Expect = 1e-30 Identities = 140/163 (85%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 |||| |||||||||||||||||||| ||||| || |||| || |||||||||||||||| Sbjct: 23 agccactgcacatcctcttcttcccattcctcgcgcccggtcatctcatcccgatcgccg 82 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 | |||||||| || ||||||| || |||||| ||||||||||||||||||| || |||| Sbjct: 83 atatggccgctctgttcgccgctcgtggcgtcaggtgcaccatcctcaccacccctgtca 142 Query: 231 acgccgccatcatccgctccgcagtccaccgcgccaacgactc 273 |||||||| | |||||||| || || |||| ||||||||||| Sbjct: 143 acgccgccgtgatccgctcggccgtggaccgtgccaacgactc 185
>dbj|AK103824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147K24, full insert sequence Length = 1896 Score = 141 bits (71), Expect = 1e-30 Identities = 140/163 (85%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 |||| |||||||||||||||||||| ||||| || |||| || |||||||||||||||| Sbjct: 120 agccactgcacatcctcttcttcccattcctcgcgcccggtcatctcatcccgatcgccg 179 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 | |||||||| || ||||||| || |||||| ||||||||||||||||||| || |||| Sbjct: 180 atatggccgctctgttcgccgctcgtggcgtcaggtgcaccatcctcaccacccctgtca 239 Query: 231 acgccgccatcatccgctccgcagtccaccgcgccaacgactc 273 |||||||| | |||||||| || || |||| ||||||||||| Sbjct: 240 acgccgccgtgatccgctcggccgtggaccgtgccaacgactc 282
>dbj|AK101659.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057I21, full insert sequence Length = 1896 Score = 141 bits (71), Expect = 1e-30 Identities = 140/163 (85%) Strand = Plus / Plus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 |||| |||||||||||||||||||| ||||| || |||| || |||||||||||||||| Sbjct: 120 agccactgcacatcctcttcttcccattcctcgcgcccggtcatctcatcccgatcgccg 179 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 | |||||||| || ||||||| || |||||| ||||||||||||||||||| || |||| Sbjct: 180 atatggccgctctgttcgccgctcgtggcgtcaggtgcaccatcctcaccacccctgtca 239 Query: 231 acgccgccatcatccgctccgcagtccaccgcgccaacgactc 273 |||||||| | |||||||| || || |||| ||||||||||| Sbjct: 240 acgccgccgtgatccgctcggccgtggaccgtgccaacgactc 282
>gb|AY459338.1| Oryza sativa (japonica cultivar-group) clone CL029396.2 R2R3-MYB gene region Length = 16710 Score = 133 bits (67), Expect = 4e-28 Identities = 121/139 (87%) Strand = Plus / Minus Query: 111 agccgctgcacatcctcttcttcccgttcctggcctccggccacctcatcccgatcgccg 170 |||| |||||||||||||||||||| ||||| || |||| || |||||||||||||||| Sbjct: 6495 agccactgcacatcctcttcttcccattcctcgcgcccggtcatctcatcccgatcgccg 6436 Query: 171 acatggccgcgctcttcgccggccgcggcgtccggtgcaccatcctcaccacgcccgtca 230 | |||||||| || ||||||| || |||||| ||||||||||||||||||| || |||| Sbjct: 6435 atatggccgctctgttcgccgctcgtggcgtcaggtgcaccatcctcaccacccctgtca 6376 Query: 231 acgccgccatcatccgctc 249 |||||||| | |||||||| Sbjct: 6375 acgccgccgtgatccgctc 6357
>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013F10 Length = 163095 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 216 tcaccacgcccgtcaacgccgc 237 |||||||||||||||||||||| Sbjct: 37066 tcaccacgcccgtcaacgccgc 37045
>ref|XM_483004.1| Oryza sativa (japonica cultivar-group), mRNA Length = 769 Score = 42.1 bits (21), Expect = 1.00 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 172 catggccgcgctcttcgccggccgcggcg 200 ||||||||||||||||||| ||||||||| Sbjct: 124 catggccgcgctcttcgcc-gccgcggcg 151
>ref|XM_473829.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2778 Score = 42.1 bits (21), Expect = 1.00 Identities = 24/25 (96%) Strand = Plus / Plus Query: 92 gccatggctgtccacgacgagccgc 116 |||||||||||| |||||||||||| Sbjct: 2722 gccatggctgtcgacgacgagccgc 2746
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 tcccgatcgccgacatggccg 179 ||||||||||||||||||||| Sbjct: 730331 tcccgatcgccgacatggccg 730311
>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03, complete sequence Length = 179798 Score = 42.1 bits (21), Expect = 1.00 Identities = 24/25 (96%) Strand = Plus / Minus Query: 92 gccatggctgtccacgacgagccgc 116 |||||||||||| |||||||||||| Sbjct: 100564 gccatggctgtcgacgacgagccgc 100540
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.00 Identities = 24/25 (96%) Strand = Plus / Minus Query: 92 gccatggctgtccacgacgagccgc 116 |||||||||||| |||||||||||| Sbjct: 30833043 gccatggctgtcgacgacgagccgc 30833019 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 ccgacatggccgcgctcttc 187 |||||||||||||||||||| Sbjct: 33145992 ccgacatggccgcgctcttc 33146011
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.00 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 172 catggccgcgctcttcgccggccgcggcg 200 ||||||||||||||||||| ||||||||| Sbjct: 23840735 catggccgcgctcttcgcc-gccgcggcg 23840762
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.00 Identities = 24/25 (96%) Strand = Plus / Minus Query: 147 ccggccacctcatcccgatcgccga 171 ||||||||||||||||||| ||||| Sbjct: 8018644 ccggccacctcatcccgatggccga 8018620
>dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0092C08 Length = 131049 Score = 42.1 bits (21), Expect = 1.00 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 172 catggccgcgctcttcgccggccgcggcg 200 ||||||||||||||||||| ||||||||| Sbjct: 129935 catggccgcgctcttcgcc-gccgcggcg 129962
>dbj|AP004213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_H02 Length = 108603 Score = 42.1 bits (21), Expect = 1.00 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 172 catggccgcgctcttcgccggccgcggcg 200 ||||||||||||||||||| ||||||||| Sbjct: 32439 catggccgcgctcttcgcc-gccgcggcg 32466
>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0503B05 Length = 156814 Score = 42.1 bits (21), Expect = 1.00 Identities = 24/25 (96%) Strand = Plus / Minus Query: 147 ccggccacctcatcccgatcgccga 171 ||||||||||||||||||| ||||| Sbjct: 6837 ccggccacctcatcccgatggccga 6813
>dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09 Length = 160665 Score = 42.1 bits (21), Expect = 1.00 Identities = 24/25 (96%) Strand = Plus / Minus Query: 147 ccggccacctcatcccgatcgccga 171 ||||||||||||||||||| ||||| Sbjct: 142059 ccggccacctcatcccgatggccga 142035
>dbj|AK107940.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-A12, full insert sequence Length = 769 Score = 42.1 bits (21), Expect = 1.00 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 172 catggccgcgctcttcgccggccgcggcg 200 ||||||||||||||||||| ||||||||| Sbjct: 124 catggccgcgctcttcgcc-gccgcggcg 151
>dbj|AK099648.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065A21, full insert sequence Length = 2500 Score = 42.1 bits (21), Expect = 1.00 Identities = 24/25 (96%) Strand = Plus / Plus Query: 92 gccatggctgtccacgacgagccgc 116 |||||||||||| |||||||||||| Sbjct: 2255 gccatggctgtcgacgacgagccgc 2279
>ref|XM_474128.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2133 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ccgacatggccgcgctcttc 187 |||||||||||||||||||| Sbjct: 1138 ccgacatggccgcgctcttc 1119
>gb|AF527807.1| Sorghum bicolor clone BAC SB_BBc0126P21 php200725 orthologous region Length = 75840 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 208 caccatcctcaccacgcccgtcaacgcc 235 ||||||| |||||||||||| ||||||| Sbjct: 67505 caccatcatcaccacgcccgccaacgcc 67478
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 tcgccgacatggccgcgctc 184 |||||||||||||||||||| Sbjct: 1337636 tcgccgacatggccgcgctc 1337617
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 tcgccgacatggccgcgctc 184 |||||||||||||||||||| Sbjct: 2122393 tcgccgacatggccgcgctc 2122412
>gb|AY310323.1| Streptomyces sp. FR-008 heptaene macrolide complex synthesis gene cluster, complete sequence Length = 138203 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 ccgcgctcttcgccggccgcggcg 200 ||||| |||||||||||||||||| Sbjct: 31921 ccgcgttcttcgccggccgcggcg 31898
>emb|AL591793.1|SME591793 Sinorhizobium meliloti 1021 complete chromosome; segment 12/12 Length = 273785 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 276 tcgccggcaccggctccccggcca 299 |||||| ||||||||||||||||| Sbjct: 67464 tcgccgccaccggctccccggcca 67441
>emb|Z79690.1|ANPFKA Aspergillus niger pfkA gene Length = 4658 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 acctcatcccgatcgccgac 172 |||||||||||||||||||| Sbjct: 4427 acctcatcccgatcgccgac 4408
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 178 cgcgctcttcgccggccgcggcgtccgg 205 ||||| ||||| |||||||||||||||| Sbjct: 29326 cgcgcacttcggcggccgcggcgtccgg 29353
>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14 Length = 344805 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 178 cgcgctcttcgccggccgcggcgtccgg 205 ||||| ||||| |||||||||||||||| Sbjct: 323907 cgcgcacttcggcggccgcggcgtccgg 323934
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 tcgccgacatggccgcgctc 184 |||||||||||||||||||| Sbjct: 2250829 tcgccgacatggccgcgctc 2250810
>emb|AJ300302.1|SGR300302 Streptomyces griseus partial ORF1, canA gene, canC gene, canF gene, canT gene, canRA gene and canRB gene Length = 39314 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 ccgcgctcttcgccggccgcggcg 200 ||||| |||||||||||||||||| Sbjct: 26415 ccgcgttcttcgccggccgcggcg 26392
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 atcgccgacatggccgcgct 183 |||||||||||||||||||| Sbjct: 964988 atcgccgacatggccgcgct 964969 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 gcgccaacgactccttcgcc 280 |||||||||||||||||||| Sbjct: 687987 gcgccaacgactccttcgcc 687968
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 gcctccggccacctcatccc 162 |||||||||||||||||||| Sbjct: 4466674 gcctccggccacctcatccc 4466655 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 gcctccggccacctcatccc 162 |||||||||||||||||||| Sbjct: 2457069 gcctccggccacctcatccc 2457088
>dbj|AK119889.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-A02, full insert sequence Length = 2554 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ccgacatggccgcgctcttc 187 |||||||||||||||||||| Sbjct: 1167 ccgacatggccgcgctcttc 1148
>dbj|AK120146.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028L17, full insert sequence Length = 2491 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ccgacatggccgcgctcttc 187 |||||||||||||||||||| Sbjct: 1137 ccgacatggccgcgctcttc 1118
>dbj|AK119579.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-B11, full insert sequence Length = 2001 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ccgacatggccgcgctcttc 187 |||||||||||||||||||| Sbjct: 680 ccgacatggccgcgctcttc 661
>dbj|AK100096.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004B22, full insert sequence Length = 2556 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ccgacatggccgcgctcttc 187 |||||||||||||||||||| Sbjct: 1234 ccgacatggccgcgctcttc 1215
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 atcgccgacatggccgcgct 183 |||||||||||||||||||| Sbjct: 671141 atcgccgacatggccgcgct 671122
>emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete sequence Length = 118971 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 ccgacatggccgcgctcttc 187 |||||||||||||||||||| Sbjct: 36375 ccgacatggccgcgctcttc 36394
>gb|AF080235.1|AF080235 Streptomyces cyanogenus landomycin biosynthetic gene cluster, complete sequence Length = 34644 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 tcgccgacatggccgcgctc 184 |||||||||||||||||||| Sbjct: 21387 tcgccgacatggccgcgctc 21406
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 gccggccgcggcgtccggtg 207 |||||||||||||||||||| Sbjct: 957311 gccggccgcggcgtccggtg 957330
>emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02, complete sequence Length = 165745 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 ccgacatggccgcgctcttc 187 |||||||||||||||||||| Sbjct: 28642 ccgacatggccgcgctcttc 28661
>emb|AL929212.8| Mouse DNA sequence from clone RP23-65G6 on chromosome 2, complete sequence Length = 255261 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 tcctcttcttcccgttcctg 142 |||||||||||||||||||| Sbjct: 172432 tcctcttcttcccgttcctg 172451 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,098,692 Number of Sequences: 3902068 Number of extensions: 2098692 Number of successful extensions: 42502 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41529 Number of HSP's gapped (non-prelim): 968 length of query: 300 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 278 effective length of database: 17,147,199,772 effective search space: 4766921536616 effective search space used: 4766921536616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
