>XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG protein)|
          Length = 439

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = -1

Query: 218 PTFHLAPAPERSSMVEAHGGEPLSARREGEGDEPGWRRARAPSPSESPE 72
           P   +APAP       A GG P  A  EGE   P    A AP+P+E  E
Sbjct: 31  PAEGVAPAP-------AEGGAPAPAPAEGEAPAPAEGGAPAPAPAEGAE 72



 Score = 30.8 bits (68), Expect = 0.93
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 203 APAP-ERSSMVEAHGGEPLSARREGEGDEPGWRRARAPSPS 84
           APAP E  +   A GG P  A  EGE   P      AP+P+
Sbjct: 102 APAPAEGGAPAPAEGGAPAPAPAEGEAPAPAPAEGEAPAPA 142



 Score = 30.0 bits (66), Expect = 1.6
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 203 APAP-ERSSMVEAHGGEPLSARREGEGDEPGWRRARAPSPSE 81
           APAP E  +   A G  P  A  EGE   P      APSP+E
Sbjct: 280 APAPAEGEAPAPAEGEAPAPAPAEGEAPAPAPAEGGAPSPAE 321



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -1

Query: 203 APAP---ERSSMVEAHGGEPLSARREGEGDEPGWRRARAPSPSE 81
           APAP   E  +   A G  P  A  EGE   P    A AP+P+E
Sbjct: 260 APAPAEGEAPAPAPAEGEAPAPAPAEGEAPAPAEGEAPAPAPAE 303



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = -1

Query: 203 APAP---ERSSMVEAHGGEPLSARREGEGDEPGWRRARAPSPSESP 75
           APAP   E  +   A G  P  A  EGE   P      AP+P+ +P
Sbjct: 168 APAPAEGEAPAPAPAEGEAPAPAPAEGEAPAPAPAEGEAPAPAPAP 213



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -1

Query: 203 APAP---ERSSMVEAHGGEPLSARREGEGDEPGWRRARAPSPSE 81
           APAP   E  +   A G  P  A  EGE   P    A AP+P+E
Sbjct: 120 APAPAEGEAPAPAPAEGEAPAPAPAEGEAPAPAEGEAPAPAPAE 163



 Score = 29.3 bits (64), Expect = 2.7
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 203 APAP-ERSSMVEAHGGEPLSARREGEGDEPGWRRARAPSPSE 81
           APAP E  +   A GG P  A  EG    P    A AP+P+E
Sbjct: 46  APAPAEGEAPAPAEGGAPAPAPAEGAEPAPADGGAPAPAPAE 87



 Score = 28.9 bits (63), Expect = 3.5
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -1

Query: 203 APAP---ERSSMVEAHGGEPLSARREGEGDEPGWRRARAPSPSE 81
           APAP   E  +   A G  P  A  EGE   P      AP+P+E
Sbjct: 250 APAPAEGEAPAPAPAEGEAPAPAPAEGEAPAPAPAEGEAPAPAE 293



 Score = 27.7 bits (60), Expect = 7.9
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = -1

Query: 203 APAPERSSMVEAHGGEPLSARREGEGDEPGWRRARAPSPSE 81
           APAP       A GG P  A  EG    P    A AP+P+E
Sbjct: 90  APAP-----APAEGGAPAPAPAEGGAPAPAEGGAPAPAPAE 125

>EXTL1_MOUSE (Q9JKV7) Exostosin-like 1 (EC 2.4.1.224)|
           (Glucuronosyl-N-acetylglucosaminyl-proteoglycan
           4-alpha-N-acetylglucosaminyltransferase) (Exostosin-L)
           (Multiple exostosis-like protein)
          Length = 669

 Score = 31.6 bits (70), Expect = 0.55
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 101 ALAAIPARHPLPPSSLTKARRHGPQPSTTVLA 196
           AL  +P  HPL   +  K ++H PQP  T+LA
Sbjct: 191 ALPYLPEAHPLRGGAPGKLQQHSPQPGATLLA 222

>KCNC3_RAT (Q01956) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 889

 Score = 31.6 bits (70), Expect = 0.55
 Identities = 16/29 (55%), Positives = 16/29 (55%)
 Frame = +1

Query: 88  GLGARARRHPGSSPSPSLLADKGSPPWAS 174
           G   R  RHPG SPSP   A  G PP AS
Sbjct: 801 GKHQRGGRHPGVSPSPQQRACVGEPPSAS 829

>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase|
           (EC 2.7.11.1) (Aortic preferentially expressed protein
           1) (APEG-1)
          Length = 3223

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = -1

Query: 218 PTFHLAPAPERSSMVEAHGGEPLS-ARREGEGDEPGWRRARAPS----PSESPE 72
           P F     P+ S  V     +P S +  E  GDEPG  R+R P+    P E P+
Sbjct: 534 PLFSRPSTPKTSRAVSPAAAQPPSPSSAEKPGDEPGRPRSRGPAGRTEPGEGPQ 587

>EXTL1_HUMAN (Q92935) Exostosin-like 1 (EC 2.4.1.224)|
           (Glucuronosyl-N-acetylglucosaminyl-proteoglycan
           4-alpha-N-acetylglucosaminyltransferase) (Exostosin-L)
           (Multiple exostosis-like protein)
          Length = 676

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 101 ALAAIPARHPLPPSSLTKARRHGPQPSTTVLA 196
           AL  +P  HPL   +  + R+H PQP   +LA
Sbjct: 197 ALPFLPEAHPLRGGAPGQLRQHSPQPGVALLA 228

>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator|
            of retinoic acid and thyroid hormone receptor) (SMRT)
            (SMRTe) (Thyroid-, retinoic-acid-receptor-associated
            corepressor) (T3 receptor-associating factor) (TRAC) (CTG
            repeat p
          Length = 2517

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +2

Query: 128  PLPPSSLTKARRHGPQPSTTVLA----PVPGGMLDRRRLLL 238
            P+PP  + KA  H P PS    A    P+P G+ D  R +L
Sbjct: 1056 PVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVL 1096

>PTPRV_MOUSE (P70289) Receptor-type tyrosine-protein phosphatase V precursor (EC|
           3.1.3.48) (Embryonic stem cell protein-tyrosine
           phosphatase) (ES cell phosphatase)
          Length = 1705

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +2

Query: 128 PLPPSSLTKARRHGPQPSTTVLAPVPGGM 214
           PLPP SL    R+ P   T   AP PG M
Sbjct: 473 PLPPQSLEIISRNSPSDLTIGWAPAPGQM 501

>RNH_THET2 (Q72IE1) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 166

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 206 LAPAPERSSMVEAHGGEPLSARREGEGDEPGWRRARAPSPSESPEL 69
           +AP   R   V+ H G P + R + E       +A+ P P ++P L
Sbjct: 116 MAPHRVRFHFVKGHTGHPENERVDREARRQAQSQAKTPCPPQAPTL 161

>Y966_TREPA (O83932) Hypothetical protein TP0966 precursor|
          Length = 544

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +2

Query: 71  APATPMDLVRALAAIPARHPLPPSSLTKARRHGPQPSTTVLAPVPGGMLDRR 226
           AP TP     A  A  A   +PP+   +A    P P      PVPGG +  R
Sbjct: 41  APGTP-----APPAHTASEAVPPAPEPRAEGEQPSPLVPTALPVPGGAVAAR 87

>SURE_CARHZ (Q3ADI0) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside|
           5'-monophosphate phosphohydrolase)
          Length = 264

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 22/64 (34%), Positives = 28/64 (43%)
 Frame = +2

Query: 80  TPMDLVRALAAIPARHPLPPSSLTKARRHGPQPSTTVLAPVPGGMLDRRRLLLIPAISIS 259
           TP D V+   A+ A    PP  +      GP   T VL            +  IPAI+IS
Sbjct: 73  TPADCVKL--AVEALLDKPPDLVLSGINSGPNLGTDVLYSGTVSAAIEAMINGIPAIAIS 130

Query: 260 IGSF 271
           +GSF
Sbjct: 131 MGSF 134

>DOK2_HUMAN (O60496) Docking protein 2 (Downstream of tyrosine kinase 2)|
           (p56(dok-2))
          Length = 412

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/45 (40%), Positives = 20/45 (44%)
 Frame = +2

Query: 71  APATPMDLVRALAAIPARHPLPPSSLTKARRHGPQPSTTVLAPVP 205
           APATP       A IPA  P P S  ++     P PS T   P P
Sbjct: 249 APATPQPQP---ATIPASLPRPDSPYSRPHDSLPPPSPTTPVPAP 290

>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein|
           15) (One-twenty two protein)
          Length = 977

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = -1

Query: 194 PERSSMVEAHGGEPLSARREGEGDEPGWRRARAPSPSESPEL 69
           P +  + E  GG  L   R  E D P  R   APSP  SPEL
Sbjct: 639 PRKRRLPEESGGRHLD--RSPESDRPRKRHC-APSPDRSPEL 677

>VP61_NPVAC (Q03209) 61 kDa protein|
          Length = 543

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +2

Query: 74  PATPMDLVRALAAIPARHPLPPSSLTKARRHGPQPSTTVLAPVPGGMLDRRRLLL 238
           PA P      +  IPA  P PP S+++     P P+     P P   LD R+ LL
Sbjct: 181 PAAPPPPPSPVPNIPAPPPPPPPSMSELPPAPPMPT----EPQPAAPLDDRQQLL 231

>UL17_VZVD (P09292) Gene 43 protein|
          Length = 676

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
 Frame = +2

Query: 98  RALAAIPARHPLPPSS-------LTKARRHGPQPSTTVLAPVPGGMLD 220
           RA+  + +RHP+ PSS       L  A+ HG Q S T   P+  G  D
Sbjct: 244 RAVNIVNSRHPVRPSSSRVASGLLQSAKGHGAQTSNT--DPINNGSFD 289

>PACC_GIBMO (Q873X0) pH-response transcription factor pacC/RIM101|
          Length = 613

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +2

Query: 2   SPSRGYATP---HAGAIAFXXXXXXXAPATPMDLVRALAAIPARHPLPPSSLTKARRHGP 172
           SP   + +P   H GA  +         A+PM  + +    PA  P P SS++    H P
Sbjct: 374 SPPTSHRSPTGMHVGADGYQPVSAASM-ASPMTAISSTGT-PAVTP-PSSSMSYTSGHSP 430

Query: 173 QPSTTVLAP 199
            PS++ ++P
Sbjct: 431 SPSSSAMSP 439

>RNH_THET8 (P29253) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 166

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 206 LAPAPERSSMVEAHGGEPLSARREGEGDEPGWRRARAPSPSESPEL 69
           +AP   R   V+ H G P + R + E       +A+ P P  +P L
Sbjct: 116 MAPHRVRFHFVKGHTGHPENERVDREARRQAQSQAKTPCPPRAPTL 161

>MRP_MOUSE (P28667) MARCKS-related protein (MARCKS-like protein 1) (Macrophage|
           myristoylated alanine-rich C kinase substrate)
           (Mac-MARCKS) (MacMARCKS) (Brain protein F52)
          Length = 199

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 203 APAPERSSMVEAHGGEPLSARREGEGDEPGWRRARAPSPSESPE 72
           A A   S   +A G E  +A +EG+ +E    +A  PS    PE
Sbjct: 144 AAATPESQEPQAKGAEASAASKEGDTEEEAGPQAAEPSTPSGPE 187

>BFSP1_BOVIN (Q06002) Filensin (Beaded filament structural protein 1)|
          Length = 756

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 206 LAPAPERSSMVEAHGGEPLSARREGEGDEPGWRRARAP 93
           +AP PE  S   + G + +    EG G   G R AR+P
Sbjct: 664 VAPGPEGPSTPRSQGPQVILGGSEGHGARSGSRLARSP 701

>GLMU_THET8 (Q5SLA8) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 453

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 206 LAPAPERSSMVEAHGGEPLSARREGEGDEPGWRR 105
           LA  PER  +V  HGGE +    EG   E  W++
Sbjct: 40  LALKPERLVVVVGHGGEKVVEALEGYPVEVAWQK 73

>GLMU_THET2 (Q72LP1) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 453

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 206 LAPAPERSSMVEAHGGEPLSARREGEGDEPGWRR 105
           LA  PER  +V  HGGE +    EG   E  W++
Sbjct: 40  LALKPERLVVVVGHGGEKVVEALEGYPVEVAWQK 73

>TRPB2_PYRAB (Q9V150) Tryptophan synthase beta chain 2 (EC 4.2.1.20)|
          Length = 451

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 233 AVFFYPTFHLAPAPERSSMVEAHGGEPLSARREGE 129
           AV F     + PAPE +  V+A   + L ARREG+
Sbjct: 378 AVLFAKAEGIVPAPESAHAVKAVIDKALEARREGK 412

>MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protein) (86 kDa|
           protein)
          Length = 537

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = +2

Query: 71  APATPMDLVRALAAIPARHPLPPSSLTKARRHGPQPSTTVLAPVP 205
           AP  P D  +  A      P P      A   GP P+    AP P
Sbjct: 79  APEHPPDAEQPAAPAAEHAPTPTHEAAPAHEEGPPPAAPAEAPAP 123


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,485,143
Number of Sequences: 219361
Number of extensions: 815518
Number of successful extensions: 3825
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3816
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)