Clone Information

BLAST Search Result

Clone Name	baet71b01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PRA_MYCTU (O53426) Proline-rich antigen homolog	34	0.10
2	TEGU_EBV (P03186) Large tegument protein	33	0.17
3	XRN2_HUMAN (Q9H0D6) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (DHM1-...	31	0.85
4	XRN2_MOUSE (Q9DBR1) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (Prote...	31	0.85
5	YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6	30	1.1
6	CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor	30	1.1
7	IF2_BDEBA (Q6MMS6) Translation initiation factor IF-2	30	1.1
8	CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor	30	1.4
9	Y1491_HELPY (O26024) Putative phosphate permease HP1491	30	1.9
10	SP39_RHIME (Q92KZ7) Probable sugar-binding periplasmic protein p...	30	1.9
11	SP39_BRUSU (Q8FVX5) Probable sugar-binding periplasmic protein p...	29	2.5
12	SP39_BRUME (Q8YCE2) Probable sugar-binding periplasmic protein p...	29	2.5
13	SP39_BRUAB (O06875) Probable sugar-binding periplasmic protein p...	29	2.5
14	ACH10_RAT (Q9JLB5) Neuronal acetylcholine receptor protein, alph...	29	2.5
15	CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22	29	2.5
16	YE91_HELPJ (Q9ZJC8) Putative phosphate permease jhp_1384	29	3.2
17	RECO_PROAC (Q6A969) DNA repair protein recO (Recombination prote...	29	3.2
18	OPSD_SEPOF (O16005) Rhodopsin	29	3.2
19	HXADA_BRARE (Q6W990) Homeobox protein Hox-A13a	29	3.2
20	ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein ...	29	3.2
21	AA2AR_CAVPO (P46616) Adenosine A2a receptor	29	3.2
22	CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit...	29	3.2
23	FXR2_MOUSE (Q9WVR4) Fragile X mental retardation syndrome-relate...	29	3.2
24	GAG_MLVDE (P29168) Gag polyprotein [Contains: Core protein p15; ...	28	4.2
25	EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline...	28	5.5
26	SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF	28	5.5
27	VGLH_HHV1E (P08356) Glycoprotein H precursor	28	5.5
28	VGLH_HHV11 (P06477) Glycoprotein H precursor	28	5.5
29	GAG_MLVDU (P23090) Gag polyprotein [Contains: Core protein p15; ...	28	5.5
30	SRF3_CAEEL (Q93890) UDP-galactose/UDP-N-acetylglucosamine transp...	28	5.5
31	SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-li...	28	7.2
32	DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain)...	28	7.2
33	DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)	28	7.2
34	KISS1_HUMAN (Q15726) Metastasis-suppressor KiSS-1 precursor (Kis...	28	7.2
35	CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor	28	7.2
36	DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)	28	7.2
37	CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Frag...	28	7.2
38	NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleopor...	28	7.2
39	EFNB3_MOUSE (O35393) Ephrin-B3 precursor	28	7.2
40	EFNB3_HUMAN (Q15768) Ephrin-B3 precursor (EPH-related receptor t...	28	7.2
41	VP40_EBV (P03234) Capsid protein P40 (Virion structural protein ...	27	9.4
42	VCAP_EHV1V (Q6S6S9) Major capsid protein (MCP) (Capsid protein VP5)	27	9.4
43	VCAP_EHV1B (P28920) Major capsid protein (MCP) (Capsid protein VP5)	27	9.4
44	CDSA_CHLTR (O84457) Phosphatidate cytidylyltransferase (EC 2.7.7...	27	9.4
45	FOXD1_HUMAN (Q16676) Forkhead box protein D1 (Forkhead-related p...	27	9.4
46	CP27A_RABIT (P17177) Cytochrome P450 27, mitochondrial precursor...	27	9.4
47	PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor	27	9.4
48	HEM1_NEUCR (Q7RVY5) 5-aminolevulinate synthase, mitochondrial pr...	27	9.4
49	CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain	27	9.4
50	LPP_HUMAN (Q93052) Lipoma-preferred partner (LIM domain-containi...	27	9.4
51	CDSA_CHLPN (Q9Z7Y6) Phosphatidate cytidylyltransferase (EC 2.7.7...	27	9.4

>PRA_MYCTU (O53426) Proline-rich antigen homolog|
          Length = 240

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -2

Query: 142 PGPAGGFDPRAYAVDAMEDH---PPPDTRHGHDPRPIPPAG 29
           PGP+GG +P   A      +   PPP +  G+ P P PP G
Sbjct: 18  PGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPGG 58

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>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 145 SPGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPAGQR 23
           +P PA    P A  ++  ++HPP   R G +  P PP GQ+
Sbjct: 603 APPPAQQLPPSATTLEPEKNHPPAADRAGTEISPSPPFGQQ 643

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>XRN2_HUMAN (Q9H0D6) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (DHM1-like protein)|
           (DHP protein)
          Length = 950

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
 Frame = -2

Query: 286 KTGE*MAKRRAKEM*VRRARQQPATSPIPSFLGSILLSSLASRGCLRSPGPAGGFDPR-- 113
           K  E   +RR KE   R  R QPA +P     G +   +L SR    SPG     +PR  
Sbjct: 408 KDDEDSFRRRQKEKRKRMKRDQPAFTP----SGILTPHALGSR---NSPGSQVASNPRQA 460

Query: 112 AYAVDAMEDHPP---PDTRHGHDPRPIPPAGQRKR 17
           AY +    +  P   P+T    D  P P  G +++
Sbjct: 461 AYEMRMQNNSSPSISPNTSFTSDGSPSPLGGIKRK 495

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>XRN2_MOUSE (Q9DBR1) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (Protein Dhm1)|
          Length = 951

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
 Frame = -2

Query: 286 KTGE*MAKRRAKEM*VRRARQQPATSPIPSFLGSILLSSLASRGCLRSPGPAGGFDPR-- 113
           K  E   +RR KE   R  R QPA +P     G +   +L SR    SPG     +PR  
Sbjct: 408 KDDEDSFRRRQKEKRKRMKRDQPAFTP----SGILTPHALGSR---NSPGCQVASNPRQA 460

Query: 112 AYAVDAMEDHPP---PDTRHGHDPRPIPPAGQRKR 17
           AY +    +  P   P+T    D  P P  G +++
Sbjct: 461 AYEMRMQRNSSPSISPNTSFASDGSPSPLGGIKRK 495

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>YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6|
          Length = 278

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = -2

Query: 163 SRGCLRSPGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPA 32
           S G   +PGPAG   P           P PD   GHD +P P A
Sbjct: 224 SAGAPGAPGPAGA--PGVDGQPGANGQPGPDGEQGHDGQPGPDA 265

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>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 160  RGCLRSPGPAGGFDPRAYAVDAMEDHPPP--DTRHGHDPRPIPPAGQRKRRNK 8
            +G + SPGPAG   P       +  H PP  D   GH P PI P G R  R +
Sbjct: 1126 QGAIGSPGPAGPRGP-------VGPHGPPGKDGTSGH-PGPIGPPGPRGNRGE 1170

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>IF2_BDEBA (Q6MMS6) Translation initiation factor IF-2|
          Length = 975

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 220 PATSPIPSFLGSILLSSLASRGCLRSPG--PAGGFDPRA 110
           PA++P  + +G + LS + S+   R  G  PAGGF PRA
Sbjct: 221 PASAPKRNIIGRMDLSRVQSQAPQRPQGERPAGGFTPRA 259

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>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 160  RGCLRSPGPAGGFDPRAYAVDAMEDHPPP--DTRHGHDPRPIPPAGQRKRRNK 8
            +G + SPGPAG   P       +  H PP  D   GH P PI P G R  R +
Sbjct: 1126 QGAVGSPGPAGPRGP-------VGPHGPPGKDGSSGH-PGPIGPPGPRGNRGE 1170

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>Y1491_HELPY (O26024) Putative phosphate permease HP1491|
          Length = 533

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 162 LAKELSRIEPKKLGIGLVAGCCLALLTYISFARLFAIYSPVFEST 296
           + K L R+      I L  GC LALL +I F R     +P  E++
Sbjct: 238 IVKVLKRLYALNFEIQLACGCILALLIFILFKRFVLKKAPQLENS 282

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>SP39_RHIME (Q92KZ7) Probable sugar-binding periplasmic protein precursor|
          Length = 414

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 267 AIYSPVFESTSMVMKNAPPASTAVPSTE 350
           AI SP F+S   V+K + PA T VP T+
Sbjct: 319 AIESPAFQSAFNVVKGSVPARTDVPDTD 346

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>SP39_BRUSU (Q8FVX5) Probable sugar-binding periplasmic protein precursor|
          Length = 421

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 267 AIYSPVFESTSMVMKNAPPASTAVPST 347
           AI SP F+S   V+K + PA T VP T
Sbjct: 326 AIESPAFQSAFNVVKGSAPARTDVPDT 352

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>SP39_BRUME (Q8YCE2) Probable sugar-binding periplasmic protein precursor|
          Length = 421

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 267 AIYSPVFESTSMVMKNAPPASTAVPST 347
           AI SP F+S   V+K + PA T VP T
Sbjct: 326 AIESPAFQSAFNVVKGSAPARTDVPDT 352

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>SP39_BRUAB (O06875) Probable sugar-binding periplasmic protein precursor|
           (Immunogenic 39 kDa protein) (P39)
          Length = 421

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 267 AIYSPVFESTSMVMKNAPPASTAVPST 347
           AI SP F+S   V+K + PA T VP T
Sbjct: 326 AIESPAFQSAFNVVKGSAPARTDVPDT 352

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>ACH10_RAT (Q9JLB5) Neuronal acetylcholine receptor protein, alpha-10 subunit|
           precursor (Nicotinic acetylcholine receptor subunit
           alpha 10) (NACHR alpha 10)
          Length = 447

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -2

Query: 220 PATSPIPSFLGSILLSSLASRGCLRSPG-PAGGFDPRAYAVDAMEDHPPPDTRHG--HDP 50
           P   P+P++   +LL  LA   C+R  G P G   P   A       PPP +  G  H+P
Sbjct: 327 PNAHPVPAWARVLLLGHLAKGLCVRERGEPCGQSKPLESAPSL---QPPPASPAGPCHEP 383

Query: 49  R 47
           R
Sbjct: 384 R 384

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>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22|
          Length = 831

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 148 RSPGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPR-PIPPAGQRK 20
           RSP P      R Y+ D+    PPP  R+  D R P PP  +R+
Sbjct: 760 RSPSPP---PRRRYSGDSRSPSPPPRRRYADDSRSPSPPPHRRR 800



 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/48 (37%), Positives = 20/48 (41%)
 Frame = -2

Query: 157 GCLRSPGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPAGQRKRR 14
           G  RSP P      R YA D+    PPP  R   D    P    R+RR
Sbjct: 772 GDSRSPSPP---PRRRYADDSRSPSPPPHRRRYSDDSRSPSPPPRRRR 816

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>YE91_HELPJ (Q9ZJC8) Putative phosphate permease jhp_1384|
          Length = 533

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 162 LAKELSRIEPKKLGIGLVAGCCLALLTYISFARLFAIYSPVFEST 296
           + K L R+      I L  GC LALL +I F R     +P  E++
Sbjct: 238 IVKVLKRLYAVGFEIQLACGCVLALLIFILFKRFVLKKAPQLENS 282

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>RECO_PROAC (Q6A969) DNA repair protein recO (Recombination protein O)|
          Length = 246

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
 Frame = -2

Query: 208 PIPSFLGSILLSSLASRG-------CLR--SPGPAGGFDPRAYAVDAMEDHPPPDTRHGH 56
           P    L S LL SL++ G       C+R  +PGP  GF P    V  + +  PP T H H
Sbjct: 135 PPEMVLDSYLLRSLSASGYAPDLVDCVRCGTPGPHQGFSPSLGGVVCI-NCQPPGTPHPH 193

Query: 55  D 53
           +
Sbjct: 194 E 194

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>OPSD_SEPOF (O16005) Rhodopsin|
          Length = 464

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 136 PAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPAGQ 26
           P GG+ P+ Y        PPP  + G+ P+  PP  Q
Sbjct: 395 PQGGYPPQGY--------PPPPAQGGYPPQGYPPPPQ 423

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>HXADA_BRARE (Q6W990) Homeobox protein Hox-A13a|
          Length = 310

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = -2

Query: 301 MDVLSKTGE*MAKRRAKEM*VRRARQQPATSPIPSFLGSILLSSLASRGCLRSPGPAGGF 122
           MD  + TGE     RAKE  +  +       P+PS+L   ++ ++           +G +
Sbjct: 135 MDTSASTGEDYTSSRAKEFALYSSYASSPYQPVPSYLDVPVVQAI-----------SGPW 183

Query: 121 DPRAYAVDAMEDHPP 77
           +PR  ++  ME + P
Sbjct: 184 EPRHESLLPMESYQP 198

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>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3726

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
 Frame = -2

Query: 214  TSPIPSFLG----SILLSSLASRGCLRSPGPAGGFDPR-AYAVDAMEDHPPPDTRHGHDP 50
            TSP P+ +G    ++    L + G    P  A    P  A A  AM   PPP  +    P
Sbjct: 3153 TSPKPNLMGLPSTTVPSPGLPTSGLPNKPSSASLSSPTPAQATMAMAPQPPPQPQQPQPP 3212

Query: 49   ---RPIPPAGQR 23
                P PPA Q+
Sbjct: 3213 VQQPPPPPAAQQ 3224

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>AA2AR_CAVPO (P46616) Adenosine A2a receptor|
          Length = 409

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 138 PGERRQPRLAKELSRIEPKKLGIGLVAGCCLAL 236
           PGER +  L KE+   +   + +GL A CCL L
Sbjct: 214 PGERTRSTLQKEVHPAKSLAIIVGLFALCCLPL 246

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>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/80 (27%), Positives = 26/80 (32%), Gaps = 22/80 (27%)
 Frame = -2

Query: 220 PATSPIPSFLGSILLSSLASRGCLRSPGPAGGFDPRAYAVDAMED--------------- 86
           P   P+P   G + +S        R P P+GG  PR    DA  D               
Sbjct: 304 PVVGPVPLERGQMQISD-PRPPMPRGPMPSGGIPPRGLLGDAPNDPRGGTLLSVTGEVEP 362

Query: 85  -------HPPPDTRHGHDPR 47
                  H  P   HGHD R
Sbjct: 363 RGYMGPPHQGPPMHHGHDNR 382

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>FXR2_MOUSE (Q9WVR4) Fragile X mental retardation syndrome-related protein 2|
          Length = 673

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = -2

Query: 238 RRARQQPATSPIPSFLGSILLSSLASRGCLRSPGPAGGFDPRAYAV-DAMEDHPPPDTRH 62
           RR R  P   P P    +   +S +    L+ P      D   Y++ D  E  PP D+  
Sbjct: 483 RRRRLGPGKGPPPVPRPTSRYNSSSISSVLKDP------DSNPYSLLDTSEPEPPVDSEP 536

Query: 61  GHDPRPIPPAGQRKRRNK 8
           G  P    PA  R+RR++
Sbjct: 537 GEPP----PASARRRRSR 550

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>GAG_MLVDE (P29168) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30; Nucleoprotein p10]
          Length = 535

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 142 PGPAGGFDPRAYAV--DAMEDHPPPDTRHGHDPRPIP 38
           PGP G  D   Y V  +A+  HPPP  +    P+P P
Sbjct: 70  PGPHGHPDQVPYIVTWEALAYHPPPWVKPFVSPKPFP 106

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>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -2

Query: 136 PAGGFDPRAYAVDAMEDHPPPDTRHGHDPRP 44
           P+GG  P           P P +RHGH P P
Sbjct: 151 PSGGHTPPRGQHPPSHRRPSPPSRHGHPPPP 181

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>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF|
          Length = 1097

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 142 PGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPAGQ 26
           PG  G  +  A  +  +  + PP    G  PRP PP GQ
Sbjct: 27  PGSQGNPNSLAANMQNLNINRPPPPMPGSGPRPSPPFGQ 65

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>VGLH_HHV1E (P08356) Glycoprotein H precursor|
          Length = 838

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 232 ARQQPATSPIPSFLGSILLSSLASRGCLRSPGPAGGFDPRA 110
           AR+ P T    + L +   + LA+RG LRSPG    F P A
Sbjct: 201 ARRHPTTELDITHLHNASTTWLATRGLLRSPGRYVYFSPSA 241

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>VGLH_HHV11 (P06477) Glycoprotein H precursor|
          Length = 838

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 232 ARQQPATSPIPSFLGSILLSSLASRGCLRSPGPAGGFDPRA 110
           AR+ P T    + L +   + LA+RG LRSPG    F P A
Sbjct: 201 ARRHPTTELDITHLHNASTTWLATRGLLRSPGRYVYFSPSA 241

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>GAG_MLVDU (P23090) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30; Nucleoprotein p10]
          Length = 528

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 142 PGPAGGFDPRAYAV--DAMEDHPPPDTRHGHDPRPIP 38
           PGP G  D   Y V  +A+  HPPP  +    P+P P
Sbjct: 70  PGPHGHPDQVPYIVTWEALVYHPPPWVKPFVSPKPFP 106

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>SRF3_CAEEL (Q93890) UDP-galactose/UDP-N-acetylglucosamine transporter srf-3|
           (Surface antigenicity abnormal 3)
          Length = 328

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +3

Query: 165 AKELSRIEPKKLGIGLVAGCCLALLTYISFARLFAIYSPVFESTSMVMKNAPPASTAVPS 344
           AKE S   P    + +V  CCL+    I F ++    +PV    S+ M+N   A  ++P+
Sbjct: 154 AKESSGESPFVGFVAVVVACCLSGFAGIYFEKILKGSAPV----SLWMRNVQMAVFSIPA 209

Query: 345 TEQAV 359
           +  A+
Sbjct: 210 SFSAI 214

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>SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-like At4g32640|
          Length = 1069

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 142 PGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPAGQ 26
           PG  G  +  A  +  +  + PP    G  PRP PP GQ
Sbjct: 25  PGSQGNSNALADNMQNLSLNRPPPMMPGSGPRPPPPFGQ 63

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>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)|
          Length = 851

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = -2

Query: 241 VRRARQQPATSPIPSFLG-SILLSSLASRGCLRSPGPAGGFDPRAYAVDAMEDHPPPDTR 65
           V   R+ P +SP P     ++  +   SRG    P PAG          A+   PP  +R
Sbjct: 768 VPAGRRSPTSSPTPQRRAPAVPPARPGSRGPAPGPPPAGS---------ALGGAPPVPSR 818

Query: 64  HGHDPRPIPPAGQ 26
            G  P P  P  Q
Sbjct: 819 PGASPDPFGPPPQ 831

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>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)|
          Length = 864

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = -2

Query: 241 VRRARQQPATSPIPSFLG-SILLSSLASRGCLRSPGPAGGFDPRAYAVDAMEDHPPPDTR 65
           V   R+ P +SP P     ++  +   SRG    P PAG          A+   PP  +R
Sbjct: 768 VPAGRRSPTSSPTPQRRAPAVPPARPGSRGPAPGPPPAGS---------ALGGAPPVPSR 818

Query: 64  HGHDPRPIPPAGQ 26
            G  P P  P  Q
Sbjct: 819 PGASPDPFGPPPQ 831

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>KISS1_HUMAN (Q15726) Metastasis-suppressor KiSS-1 precursor (Kisspeptin-1)|
           [Contains: Metastin (Kisspeptin-54); Kisspeptin-14;
           Kisspeptin-13; Kisspeptin-10]
          Length = 145

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 19/57 (33%), Positives = 21/57 (36%)
 Frame = +3

Query: 45  GRGSWPCLVXXXXXXXMASTAYARGSKPPAGPGERRQPRLAKELSRIEPKKLGIGLV 215
           G  S PC           S      S PP   G R+QP L+   SR  P   G  LV
Sbjct: 47  GEQSLPCTERKPAATARLSRRGTSLSPPPESSGSRQQPGLSAPHSRQIPAPQGAVLV 103

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>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = -2

Query: 160  RGCLRSPGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPAGQRKRRNK 8
            +G + SPGPAG   P           P  D   GH P PI P G R  R +
Sbjct: 1127 QGAIGSPGPAGPRGP-----VGPSGPPGKDGTSGH-PGPIGPPGPRGNRGE 1171

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>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)|
          Length = 867

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = -2

Query: 241 VRRARQQPATSPIPSFLG-SILLSSLASRGCLRSPGPAGGFDPRAYAVDAMEDHPPPDTR 65
           V   R+ P +SP P     ++  +   SRG    P PAG          A+   PP  +R
Sbjct: 768 VPAGRRSPTSSPTPQRRAPAVPPARPGSRGPAPGPPPAGS---------ALGGAPPVPSR 818

Query: 64  HGHDPRPIPPAGQ 26
            G  P P  P  Q
Sbjct: 819 PGASPDPFGPPPQ 831

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>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -2

Query: 169  LASRGCLRSPGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPAGQRKRRNKT 5
            L  +G + SPG +G   P   A       PP     G  P PI P G R  R ++
Sbjct: 925  LGPQGAIGSPGASGARGPPGPA------GPPGKDGRGGYPGPIGPPGPRGNRGES 973

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>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98|
           kDa nucleoporin)
          Length = 937

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 91  EDHPPPDTRHGHDPRPIPPAGQ 26
           E+HPP  T       P+PPAGQ
Sbjct: 892 EEHPPKTTSKKLKTAPLPPAGQ 913

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>EFNB3_MOUSE (O35393) Ephrin-B3 precursor|
          Length = 340

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 94  WRPRRTRAGQSRRPAPASGGSRG 162
           WR RR +  +SR P P S G  G
Sbjct: 251 WRRRRAKPSESRHPGPGSFGRGG 273

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>EFNB3_HUMAN (Q15768) Ephrin-B3 precursor (EPH-related receptor tyrosine kinase|
           ligand 8) (LERK-8) (EPH-related receptor transmembrane
           ligand ELK-L3)
          Length = 340

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 94  WRPRRTRAGQSRRPAPASGGSRG 162
           WR RR +  +SR P P S G  G
Sbjct: 251 WRRRRAKPSESRHPGPGSFGRGG 273

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>VP40_EBV (P03234) Capsid protein P40 (Virion structural protein BVRF2)|
           (EC-RF3 and EC-RF3A) [Contains: Capsid protein VP24
           (Assemblin) (Protease) (EC 3.4.21.97); Capsid protein
           VP22A; C-terminal peptide]
          Length = 605

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
 Frame = -2

Query: 139 GPAGGFDPRAY-AVDAMEDHP---PPDTRHG-----HDPRPIPP 35
           GPAGG DP A+ A+DA   HP   PP    G       P P+PP
Sbjct: 352 GPAGG-DPGAFLAMDAHTYHPHPHPPPAYFGLPGLFGPPPPVPP 394

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>VCAP_EHV1V (Q6S6S9) Major capsid protein (MCP) (Capsid protein VP5)|
          Length = 1376

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = -2

Query: 148  RSPGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPAGQR 23
            RS GP    D  A AVD M DH   D  +       P A QR
Sbjct: 1208 RSAGPVYACDGEADAVDVMYDHTQGDPAYPSRATVNPWASQR 1249

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>VCAP_EHV1B (P28920) Major capsid protein (MCP) (Capsid protein VP5)|
          Length = 1376

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = -2

Query: 148  RSPGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPAGQR 23
            RS GP    D  A AVD M DH   D  +       P A QR
Sbjct: 1208 RSAGPVYACDGEADAVDVMYDHTQGDPAYPSRATVNPWASQR 1249

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>CDSA_CHLTR (O84457) Phosphatidate cytidylyltransferase (EC 2.7.7.41)|
           (CDP-diglyceride synthetase) (CDP-diglyceride
           pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS)
           (CTP:phosphatidate cytidylyltransferase) (CDP-DAG
           synthase) (CDP-DG synthetase)
          Length = 305

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 183 IEPKKLGIGLVAGCCLALLTYISF 254
           I P K  +G +AGCC ++L  + F
Sbjct: 197 ISPNKTVVGFIAGCCGSILVSLLF 220

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>FOXD1_HUMAN (Q16676) Forkhead box protein D1 (Forkhead-related protein FKHL8)|
           (Forkhead-related transcription factor 4) (FREAC-4)
          Length = 465

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = -2

Query: 238 RRARQQPATSPIPSFLGSILLSSLASRGCLRSPGPAGGF-DPRAYAVDAMEDHPPPDTRH 62
           +R ++QP   P  +   S+LL         R  G AGG  DP A A       PPP   +
Sbjct: 219 KRFKRQPLLPPNAAAAESLLL---------RGAGAAGGAGDPAAAAALFPPAPPPPPHAY 269

Query: 61  GHDP 50
           G+ P
Sbjct: 270 GYGP 273

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>CP27A_RABIT (P17177) Cytochrome P450 27, mitochondrial precursor (EC|
           1.14.13.15) (Cytochrome P-450C27/25) (Sterol
           26-hydroxylase) (Sterol 27-hydroxylase) (Vitamin D(3)
           25-hydroxylase)
           (5-beta-cholestane-3-alpha,7-alpha,12-alpha-triol
           27-hydroxylase)
          Length = 535

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 27  CPAGGIGRGSWPCLVXXXXXXXMASTAYARGSKPPAGPGERRQPRLAKELSRI 185
           CP G   + + P           A  A      P AGPG+RR+ R  +EL R+
Sbjct: 24  CPQGARAKAAIPT----------ALPADEAAQAPGAGPGDRRRRRSLEELPRL 66

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>PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor|
          Length = 261

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -2

Query: 136 PAGGFDPRAYAVDAMEDHPPPDTRHGHDPR-PIPPAGQRKR 17
           P  GF PR     + +  PPP       P+ P PP G + R
Sbjct: 35  PPSGFQPRPPVNGSQQGPPPPGGPQPRPPQGPPPPGGPQPR 75

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>HEM1_NEUCR (Q7RVY5) 5-aminolevulinate synthase, mitochondrial precursor (EC|
           2.3.1.37) (5-aminolevulinic acid synthase)
           (Delta-aminolevulinate synthase) (Delta-ALA synthetase)
          Length = 544

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +3

Query: 225 CLALLTYISFARLFAI----YSPVFESTSMVMKNAPPAST 332
           C A+L Y+ FA LFA     + PV  +T+     +P A T
Sbjct: 2   CFAVLQYVDFALLFAAGLPPHPPVKPTTATAANPSPAACT 41

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>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = -2

Query: 160  RGCLRSPGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPAGQRKRRNK 8
            +G + SPGPAG   P           P  D   GH P PI P G R  R +
Sbjct: 971  QGAVGSPGPAGPRGP-----VGPSGPPGKDGASGH-PGPIGPPGPRGNRGE 1015

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>LPP_HUMAN (Q93052) Lipoma-preferred partner (LIM domain-containing preferred|
           translocation partner in lipoma)
          Length = 612

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
 Frame = -2

Query: 145 SPGPAGGFDPRAY---AVDAMEDHPPPDTRHGHDPRPIPPAG 29
           S G   G  P+ Y    V      PPP TR G D   IPP G
Sbjct: 239 SSGQIYGSGPQGYNTQPVPVSGQCPPPSTRGGMDYAYIPPPG 280

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>CDSA_CHLPN (Q9Z7Y6) Phosphatidate cytidylyltransferase (EC 2.7.7.41)|
           (CDP-diglyceride synthetase) (CDP-diglyceride
           pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS)
           (CTP:phosphatidate cytidylyltransferase) (CDP-DAG
           synthase) (CDP-DG synthetase)
          Length = 308

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = +3

Query: 180 RIEPKKLGIGLVAGCCLA-LLTYISFARL---FAIYSPV 284
           +I P K  +G VAGC  A L+++I F ++   FA Y P+
Sbjct: 199 QISPNKTVVGFVAGCLGATLISFIFFLQIPTRFASYFPM 237


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,337,643
Number of Sequences: 219361
Number of extensions: 770088
Number of successful extensions: 3511
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 3149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3485
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result