ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet71b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 202 6e-49
2dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic D... 202 6e-49
3ref|XM_465315.1| Oryza sativa (japonica cultivar-group), mRNA 86 9e-14
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 86 9e-14
5dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic D... 86 9e-14
6dbj|AK070014.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 9e-14
7gb|AF160490.1|AF160490S1 Sylvilagus floridanus transcription fac... 44 0.31
8gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
9gb|AC135864.5| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
10emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete ... 42 1.2
11dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
12dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.2
13dbj|AK121144.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
14gb|AY109307.1| Zea mays PCO130268 mRNA sequence 42 1.2
15gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
16gb|AC147651.4| Homo sapiens BAC clone RP13-689E11 from 7, comple... 40 4.8
17gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial ... 40 4.8
18ref|NM_002607.4| Homo sapiens platelet-derived growth factor alp... 40 4.8
19ref|NM_033023.3| Homo sapiens platelet-derived growth factor alp... 40 4.8
20gb|AC102352.9| Mus musculus chromosome 14, clone RP23-30H7, comp... 40 4.8
21gb|AY487174.1| Locusta migratoria angiotensin converting enzyme ... 40 4.8
22emb|CR933791.16| Zebrafish DNA sequence from clone DKEYP-101F6 i... 40 4.8
23gb|AC116715.22| Mus musculus chromosome 5, clone RP23-129N14, co... 40 4.8
24emb|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete ... 40 4.8
25gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 4.8
26gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 4.8
27gb|AY027524.1| Frankia sp. CpI1 plasmid pFQ12, complete plasmid ... 40 4.8
28gb|AF417590.1|AF417590 Homo sapiens platelet-derived growth fact... 40 4.8
29gb|S51624.1|S51624S1 platelet-derived growth factor A-chain [hum... 40 4.8
30gb|U15180.1|MLU15180 Mycobacterium leprae cosmid B1756 40 4.8
31gb|AC084439.1|AC084439 Caenorhabditis briggsae cosmid CB005A09, ... 40 4.8
32dbj|BS000060.1| Pan troglodytes chromosome 22 clone:RP43-086L15,... 40 4.8
33gb|AC144755.3| Didelphis virginiana clone LB3-224H2, complete se... 40 4.8
34emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 4.8
35dbj|AP001678.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 4.8
36gb|AC111089.27| Mus musculus chromosome 5, clone RP23-156F20, co... 40 4.8
37dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 4.8
38gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold 40 4.8
39gb|M21571.1|HUMPDGFA1 Human platelet-derived growth factor (PDGF... 40 4.8
40gb|M20488.1|HUMPDGA1 Human platelet-derived growth factor A-chai... 40 4.8
41dbj|AP001254.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 4.8 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  202 bits (102), Expect = 6e-49
 Identities = 138/150 (92%)
 Strand = Plus / Plus

                                                                            
Query: 139      ccggcgagcggaggcagccgcggctggccaaggagctgagcaggatcgagcctaagaagc 198
                |||| ||||||||||  |||||||| |||||||||||  ||||||||||||| |||||||
Sbjct: 15383674 ccggagagcggaggcctccgcggctagccaaggagcttggcaggatcgagcccaagaagc 15383733

                                                                            
Query: 199      tcgggattgggctcgtcgccggctgctgcctcgccctcctcacctacatctccttcgccc 258
                ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 15383734 tcgggattgggctggtcgccggctgctgcctcgctctcctcacctacatctcctttgccc 15383793

                                              
Query: 259      gcctcttcgccatctactccccggtcttcg 288
                |||| |||||||||||||| ||||||||||
Sbjct: 15383794 gccttttcgccatctactcgccggtcttcg 15383823



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 288      gagagcacgtccatggtgatgaagaacgc 316
                |||||||||||| ||||||||||||||||
Sbjct: 15383914 gagagcacgtccttggtgatgaagaacgc 15383942
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>dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0613F06
          Length = 184289

 Score =  202 bits (102), Expect = 6e-49
 Identities = 138/150 (92%)
 Strand = Plus / Plus

                                                                         
Query: 139   ccggcgagcggaggcagccgcggctggccaaggagctgagcaggatcgagcctaagaagc 198
             |||| ||||||||||  |||||||| |||||||||||  ||||||||||||| |||||||
Sbjct: 51189 ccggagagcggaggcctccgcggctagccaaggagcttggcaggatcgagcccaagaagc 51248

                                                                         
Query: 199   tcgggattgggctcgtcgccggctgctgcctcgccctcctcacctacatctccttcgccc 258
             ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 51249 tcgggattgggctggtcgccggctgctgcctcgctctcctcacctacatctcctttgccc 51308

                                           
Query: 259   gcctcttcgccatctactccccggtcttcg 288
             |||| |||||||||||||| ||||||||||
Sbjct: 51309 gccttttcgccatctactcgccggtcttcg 51338



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 288   gagagcacgtccatggtgatgaagaacgc 316
             |||||||||||| ||||||||||||||||
Sbjct: 51429 gagagcacgtccttggtgatgaagaacgc 51457
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>ref|XM_465315.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2113

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 85/99 (85%)
 Strand = Plus / Plus

                                                                       
Query: 182 gatcgagcctaagaagctcgggattgggctcgtcgccggctgctgcctcgccctcctcac 241
           ||||||||| |||||||||||  | || ||| ||||||||||||||||||| ||||||||
Sbjct: 193 gatcgagcccaagaagctcggcgtcggcctcctcgccggctgctgcctcgcgctcctcac 252

                                                  
Query: 242 ctacatctccttcgcccgcctcttcgccatctactcccc 280
           |||| ||||| | |||   |||||||| |||||||||||
Sbjct: 253 ctacgtctcccttgccaagctcttcgcaatctactcccc 291
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 85/99 (85%)
 Strand = Plus / Plus

                                                                            
Query: 182      gatcgagcctaagaagctcgggattgggctcgtcgccggctgctgcctcgccctcctcac 241
                ||||||||| |||||||||||  | || ||| ||||||||||||||||||| ||||||||
Sbjct: 13367258 gatcgagcccaagaagctcggcgtcggcctcctcgccggctgctgcctcgcgctcctcac 13367317

                                                       
Query: 242      ctacatctccttcgcccgcctcttcgccatctactcccc 280
                |||| ||||| | |||   |||||||| |||||||||||
Sbjct: 13367318 ctacgtctcccttgccaagctcttcgcaatctactcccc 13367356
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>dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1521_G01
          Length = 144102

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 85/99 (85%)
 Strand = Plus / Plus

                                                                         
Query: 182   gatcgagcctaagaagctcgggattgggctcgtcgccggctgctgcctcgccctcctcac 241
             ||||||||| |||||||||||  | || ||| ||||||||||||||||||| ||||||||
Sbjct: 92509 gatcgagcccaagaagctcggcgtcggcctcctcgccggctgctgcctcgcgctcctcac 92568

                                                    
Query: 242   ctacatctccttcgcccgcctcttcgccatctactcccc 280
             |||| ||||| | |||   |||||||| |||||||||||
Sbjct: 92569 ctacgtctcccttgccaagctcttcgcaatctactcccc 92607
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>dbj|AK070014.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038E13, full
           insert sequence
          Length = 2112

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 85/99 (85%)
 Strand = Plus / Plus

                                                                       
Query: 182 gatcgagcctaagaagctcgggattgggctcgtcgccggctgctgcctcgccctcctcac 241
           ||||||||| |||||||||||  | || ||| ||||||||||||||||||| ||||||||
Sbjct: 193 gatcgagcccaagaagctcggcgtcggcctcctcgccggctgctgcctcgcgctcctcac 252

                                                  
Query: 242 ctacatctccttcgcccgcctcttcgccatctactcccc 280
           |||| ||||| | |||   |||||||| |||||||||||
Sbjct: 253 ctacgtctcccttgccaagctcttcgcaatctactcccc 291
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>gb|AF160490.1|AF160490S1 Sylvilagus floridanus transcription factor p64 (c-myc) gene, exon 2
          Length = 760

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 315 gccccgcccgcgtccacggcgg 336
           ||||||||||||||||||||||
Sbjct: 491 gccccgcccgcgtccacggcgg 512
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>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041C22,
              complete sequence
          Length = 161172

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 207    gggctcgtcgccggctgctgcctcg 231
              |||||||||||||||||| ||||||
Sbjct: 144458 gggctcgtcgccggctgccgcctcg 144434
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>gb|AC135864.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0071K13, complete sequence
          Length = 176150

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 207   gggctcgtcgccggctgctgcctcg 231
             |||||||||||||||||| ||||||
Sbjct: 29400 gggctcgtcgccggctgccgcctcg 29376
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>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 124    agccgccggccggccccggcgagcg 148
              ||||||||||||||| |||||||||
Sbjct: 147968 agccgccggccggcctcggcgagcg 147992
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 207      gggctcgtcgccggctgctgcctcg 231
                |||||||||||||||||| ||||||
Sbjct: 14919361 gggctcgtcgccggctgccgcctcg 14919337
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 218     cggctgctgcctcgccctcctcacc 242
               ||||| |||||||||||||||||||
Sbjct: 1944779 cggctcctgcctcgccctcctcacc 1944755
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>dbj|AK121144.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078A01, full
            insert sequence
          Length = 1740

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 207  gggctcgtcgccggctgctgcctcg 231
            |||||||||||||||||| ||||||
Sbjct: 1213 gggctcgtcgccggctgccgcctcg 1237
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>gb|AY109307.1| Zea mays PCO130268 mRNA sequence
          Length = 3927

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 322  ccgcgtccacggcggtgccca 342
            |||||||||||||||||||||
Sbjct: 1537 ccgcgtccacggcggtgccca 1557
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 207      gggctcgtcgccggctgctgcctcg 231
                |||||||||||||||||| ||||||
Sbjct: 15001308 gggctcgtcgccggctgccgcctcg 15001284
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>gb|AC147651.4| Homo sapiens BAC clone RP13-689E11 from 7, complete sequence
          Length = 162139

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   ccggccccggcgagcggagg 152
             ||||||||||||||||||||
Sbjct: 48248 ccggccccggcgagcggagg 48229
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>gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence
          Length = 114045

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 245   catctccttcgcccgcctcttcgccatc 272
             |||||||||||| | |||||||||||||
Sbjct: 32043 catctccttcgcgctcctcttcgccatc 32016
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>ref|NM_002607.4| Homo sapiens platelet-derived growth factor alpha polypeptide
           (PDGFA), transcript variant 1, mRNA
          Length = 2818

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 133 ccggccccggcgagcggagg 152
           ||||||||||||||||||||
Sbjct: 193 ccggccccggcgagcggagg 212
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>ref|NM_033023.3| Homo sapiens platelet-derived growth factor alpha polypeptide
           (PDGFA), transcript variant 2, mRNA
          Length = 2749

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 133 ccggccccggcgagcggagg 152
           ||||||||||||||||||||
Sbjct: 193 ccggccccggcgagcggagg 212
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>gb|AC102352.9| Mus musculus chromosome 14, clone RP23-30H7, complete sequence
          Length = 248441

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      tgttttgtttcttctcttgc 24
              ||||||||||||||||||||
Sbjct: 113871 tgttttgtttcttctcttgc 113890
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>gb|AY487174.1| Locusta migratoria angiotensin converting enzyme mRNA, partial cds
          Length = 2061

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 331 cggcggtgcccagcacggag 350
           ||||||||||||||||||||
Sbjct: 298 cggcggtgcccagcacggag 279
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>emb|CR933791.16| Zebrafish DNA sequence from clone DKEYP-101F6 in linkage group 13,
              complete sequence
          Length = 176605

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 296    gtccatggtgatgaagaacgcccc 319
              ||||||||||||||||||| ||||
Sbjct: 111895 gtccatggtgatgaagaacacccc 111918
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>gb|AC116715.22| Mus musculus chromosome 5, clone RP23-129N14, complete sequence
          Length = 193245

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     gtgatcttccatggcgtcca 102
              ||||||||||||||||||||
Sbjct: 185674 gtgatcttccatggcgtcca 185655
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>emb|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete genome; segment 4/10
          Length = 348450

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    gctcgggattgggctcgtcg 216
              ||||||||||||||||||||
Sbjct: 239874 gctcgggattgggctcgtcg 239855
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 157     cgcggctggccaaggagctg 176
               ||||||||||||||||||||
Sbjct: 1949055 cgcggctggccaaggagctg 1949036
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 157     cgcggctggccaaggagctg 176
               ||||||||||||||||||||
Sbjct: 1908003 cgcggctggccaaggagctg 1907984
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>gb|AY027524.1| Frankia sp. CpI1 plasmid pFQ12, complete plasmid sequence
          Length = 22437

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  cgccggccggccccggcgag 146
            ||||||||||||||||||||
Sbjct: 3523 cgccggccggccccggcgag 3504
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>gb|AF417590.1|AF417590 Homo sapiens platelet-derived growth factor A chain (PDGFA) gene,
           exon 1 and partial sequence
          Length = 392

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 133 ccggccccggcgagcggagg 152
           ||||||||||||||||||||
Sbjct: 145 ccggccccggcgagcggagg 164
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>gb|S51624.1|S51624S1 platelet-derived growth factor A-chain [human, Genomic, 1399 nt,
           segment 1 of 2]
          Length = 1399

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 133 ccggccccggcgagcggagg 152
           ||||||||||||||||||||
Sbjct: 685 ccggccccggcgagcggagg 704
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>gb|U15180.1|MLU15180 Mycobacterium leprae cosmid B1756
          Length = 38675

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   gctcgggattgggctcgtcg 216
             ||||||||||||||||||||
Sbjct: 20138 gctcgggattgggctcgtcg 20119
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>gb|AC084439.1|AC084439 Caenorhabditis briggsae cosmid CB005A09, complete sequence
          Length = 82884

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     attgttttgtttcttctctt 22
             ||||||||||||||||||||
Sbjct: 20585 attgttttgtttcttctctt 20604
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>dbj|BS000060.1| Pan troglodytes chromosome 22 clone:RP43-086L15, map 22, complete
             sequences
          Length = 159919

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     ttgttttgtttcttctcttg 23
             ||||||||||||||||||||
Sbjct: 92520 ttgttttgtttcttctcttg 92501
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>gb|AC144755.3| Didelphis virginiana clone LB3-224H2, complete sequence
          Length = 116584

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     gattgttttgtttcttctct 21
             ||||||||||||||||||||
Sbjct: 80346 gattgttttgtttcttctct 80365
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 158     gcggctggccaaggagctga 177
               ||||||||||||||||||||
Sbjct: 4439256 gcggctggccaaggagctga 4439237
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>dbj|AP001678.1| Homo sapiens genomic DNA, chromosome 21q, section 22/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      ttgttttgtttcttctcttg 23
              ||||||||||||||||||||
Sbjct: 213920 ttgttttgtttcttctcttg 213901
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>gb|AC111089.27| Mus musculus chromosome 5, clone RP23-156F20, complete sequence
          Length = 211658

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     gtgatcttccatggcgtcca 102
              ||||||||||||||||||||
Sbjct: 153295 gtgatcttccatggcgtcca 153314
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 125     gccgccggccggccccggcg 144
               ||||||||||||||||||||
Sbjct: 3101396 gccgccggccggccccggcg 3101415
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>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 2       gattgttttgtttcttctct 21
               ||||||||||||||||||||
Sbjct: 1559211 gattgttttgtttcttctct 1559230
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>gb|M21571.1|HUMPDGFA1 Human platelet-derived growth factor (PDGFA) A chain gene, exon 1
          Length = 1209

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 133 ccggccccggcgagcggagg 152
           ||||||||||||||||||||
Sbjct: 453 ccggccccggcgagcggagg 472
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>gb|M20488.1|HUMPDGA1 Human platelet-derived growth factor A-chain gene, exon 1
          Length = 1285

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 133 ccggccccggcgagcggagg 152
           ||||||||||||||||||||
Sbjct: 491 ccggccccggcgagcggagg 510
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>dbj|AP001254.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B66B12,
             LL56-APP region, complete sequence
          Length = 173915

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     ttgttttgtttcttctcttg 23
             ||||||||||||||||||||
Sbjct: 36513 ttgttttgtttcttctcttg 36494


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,600,054
Number of Sequences: 3902068
Number of extensions: 3600054
Number of successful extensions: 71226
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70734
Number of HSP's gapped (non-prelim): 492
length of query: 362
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 340
effective length of database: 17,147,199,772
effective search space: 5830047922480
effective search space used: 5830047922480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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