ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet71a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_476668.1| Oryza sativa (japonica cultivar-group), mRNA 234 2e-58
2dbj|AK065458.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 2e-58
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 228 1e-56
4dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic D... 228 1e-56
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 94 4e-16
6gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17... 94 4e-16
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
8dbj|AK073187.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
9dbj|AK061286.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
10gb|AY104586.1| Zea mays PCO074858 mRNA sequence 82 1e-12
11gb|BT017370.1| Zea mays clone EL01N0324H05.c mRNA sequence 60 5e-06
12gb|AY108942.1| Zea mays PCO138129 mRNA sequence 58 2e-05
13gb|AY301324.1| Antheraea rosemariae period mRNA, partial cds 50 0.005
14gb|AC149774.2| Bos taurus BAC CH240-10G15 (Children's Hospital ... 46 0.079
15gb|AF239749.1|AF239749 Xanthomonas albilineans albicidin multifu... 46 0.079
16gb|AC124637.10| Mus musculus chromosome 15, clone RP23-458B6, co... 42 1.2
17gb|AC140489.2| Mus musculus BAC clone RP24-144C10 from chromosom... 42 1.2
18gb|AY301317.1| Antheraea lampei period mRNA, partial cds 42 1.2
19gb|AY301314.1| Antheraea helferi period mRNA, partial cds 42 1.2
20gb|AC124975.13| Mus musculus chromosome 1, clone RP23-262M12, co... 42 1.2
21emb|X81998.1|ANAREAGEN A.niger areA gene 40 4.9
22emb|BX294178.13| Zebrafish DNA sequence from clone CH211-271C18 ... 40 4.9
23gb|AC012321.8| Homo sapiens chromosome 16 clone RP11-311C24, com... 40 4.9
24emb|BX005202.14| Zebrafish DNA sequence from clone DKEY-224N5 in... 40 4.9
25emb|X99940.1|ANAREAG A.niger areA gene 40 4.9

>ref|XM_476668.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1435

 Score =  234 bits (118), Expect = 2e-58
 Identities = 260/307 (84%), Gaps = 9/307 (2%)
 Strand = Plus / Plus

                                                                       
Query: 62  atggcaggtgcaccaccaaaaccgtgggaacgtgctggggctgagggaacatccggtccg 121
           ||||||||| |||||||||| ||||||||||||||||||||||||||||| || || || 
Sbjct: 135 atggcaggttcaccaccaaagccgtgggaacgtgctggggctgagggaacttctggccca 194

                                                                       
Query: 122 ttgcctttcaaacccccatctggtggcagcactagtgatgtcgtcgaagcttctggtaca 181
              ||||| || |||||||||||||||| |||||| ||||| || |||||||||||||||
Sbjct: 195 gcaccttttaagcccccatctggtggcaccactagcgatgtagttgaagcttctggtaca 254

                                                                       
Query: 182 gctaaacctggagaaaccattgctgctacagagaggaacatgtctgccaatgtaaataac 241
           |||||||| ||||||||| |  | || |||||||||||| | ||||||||||||||||||
Sbjct: 255 gctaaacccggagaaaccgtcaccgcgacagagaggaacctctctgccaatgtaaataac 314

                                                                       
Query: 242 cccatctcgaggcctatgccccaacgtccttggcagcaaaca---ggctatggaaattct 298
           ||  |||||||||||||||| |||||||| |||||||| |||   |||||||||||| ||
Sbjct: 315 cctgtctcgaggcctatgccacaacgtccgtggcagcagacatctggctatggaaatact 374

                                                                       
Query: 299 tatggaggaacaggatacggatccaatatgtatagttcggctggtggatatggcagtact 358
           ||||||||       || |||||||||||||| ||||||   ||||||| ||||| ||| 
Sbjct: 375 tatggaggt------tatggatccaatatgtacagttcgtacggtggatttggcaatacc 428

                  
Query: 359 tatggta 365
           |||||||
Sbjct: 429 tatggta 435



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>dbj|AK065458.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023D18, full
           insert sequence
          Length = 1435

 Score =  234 bits (118), Expect = 2e-58
 Identities = 260/307 (84%), Gaps = 9/307 (2%)
 Strand = Plus / Plus

                                                                       
Query: 62  atggcaggtgcaccaccaaaaccgtgggaacgtgctggggctgagggaacatccggtccg 121
           ||||||||| |||||||||| ||||||||||||||||||||||||||||| || || || 
Sbjct: 135 atggcaggttcaccaccaaagccgtgggaacgtgctggggctgagggaacttctggccca 194

                                                                       
Query: 122 ttgcctttcaaacccccatctggtggcagcactagtgatgtcgtcgaagcttctggtaca 181
              ||||| || |||||||||||||||| |||||| ||||| || |||||||||||||||
Sbjct: 195 gcaccttttaagcccccatctggtggcaccactagcgatgtagttgaagcttctggtaca 254

                                                                       
Query: 182 gctaaacctggagaaaccattgctgctacagagaggaacatgtctgccaatgtaaataac 241
           |||||||| ||||||||| |  | || |||||||||||| | ||||||||||||||||||
Sbjct: 255 gctaaacccggagaaaccgtcaccgcgacagagaggaacctctctgccaatgtaaataac 314

                                                                       
Query: 242 cccatctcgaggcctatgccccaacgtccttggcagcaaaca---ggctatggaaattct 298
           ||  |||||||||||||||| |||||||| |||||||| |||   |||||||||||| ||
Sbjct: 315 cctgtctcgaggcctatgccacaacgtccgtggcagcagacatctggctatggaaatact 374

                                                                       
Query: 299 tatggaggaacaggatacggatccaatatgtatagttcggctggtggatatggcagtact 358
           ||||||||       || |||||||||||||| ||||||   ||||||| ||||| ||| 
Sbjct: 375 tatggaggt------tatggatccaatatgtacagttcgtacggtggatttggcaatacc 428

                  
Query: 359 tatggta 365
           |||||||
Sbjct: 429 tatggta 435



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  228 bits (115), Expect = 1e-56
 Identities = 213/245 (86%), Gaps = 3/245 (1%)
 Strand = Plus / Plus

                                                                           
Query: 65      gcaggtgcaccaccaaaaccgtgggaacgtgctggggctgagggaacatccggtccgttg 124
               |||||| |||||||||| ||||||||||||||||||||||||||||| || || ||    
Sbjct: 2827396 gcaggttcaccaccaaagccgtgggaacgtgctggggctgagggaacttctggcccagca 2827455

                                                                           
Query: 125     cctttcaaacccccatctggtggcagcactagtgatgtcgtcgaagcttctggtacagct 184
               ||||| || |||||||||||||||| |||||| ||||| || ||||||||||||||||||
Sbjct: 2827456 ccttttaagcccccatctggtggcaccactagcgatgtagttgaagcttctggtacagct 2827515

                                                                           
Query: 185     aaacctggagaaaccattgctgctacagagaggaacatgtctgccaatgtaaataacccc 244
               ||||| ||||||||| |  | || |||||||||||| | |||||||||||||||||||| 
Sbjct: 2827516 aaacccggagaaaccgtcaccgcgacagagaggaacctctctgccaatgtaaataaccct 2827575

                                                                           
Query: 245     atctcgaggcctatgccccaacgtccttggcagcaaaca---ggctatggaaattcttat 301
                |||||||||||||||| |||||||| |||||||| |||   |||||||||||| |||||
Sbjct: 2827576 gtctcgaggcctatgccacaacgtccgtggcagcagacatctggctatggaaatacttat 2827635

                    
Query: 302     ggagg 306
               |||||
Sbjct: 2827636 ggagg 2827640



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                         
Query: 308     acaggatacggatccaatatgtatagttcggctggtggatatggcagtacttatggta 365
               ||||| || |||||||||||||| ||||||   ||||||| ||||| ||| |||||||
Sbjct: 2827718 acaggttatggatccaatatgtacagttcgtacggtggatttggcaatacctatggta 2827775



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>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1364A02
          Length = 137933

 Score =  228 bits (115), Expect = 1e-56
 Identities = 213/245 (86%), Gaps = 3/245 (1%)
 Strand = Plus / Plus

                                                                          
Query: 65     gcaggtgcaccaccaaaaccgtgggaacgtgctggggctgagggaacatccggtccgttg 124
              |||||| |||||||||| ||||||||||||||||||||||||||||| || || ||    
Sbjct: 130957 gcaggttcaccaccaaagccgtgggaacgtgctggggctgagggaacttctggcccagca 131016

                                                                          
Query: 125    cctttcaaacccccatctggtggcagcactagtgatgtcgtcgaagcttctggtacagct 184
              ||||| || |||||||||||||||| |||||| ||||| || ||||||||||||||||||
Sbjct: 131017 ccttttaagcccccatctggtggcaccactagcgatgtagttgaagcttctggtacagct 131076

                                                                          
Query: 185    aaacctggagaaaccattgctgctacagagaggaacatgtctgccaatgtaaataacccc 244
              ||||| ||||||||| |  | || |||||||||||| | |||||||||||||||||||| 
Sbjct: 131077 aaacccggagaaaccgtcaccgcgacagagaggaacctctctgccaatgtaaataaccct 131136

                                                                          
Query: 245    atctcgaggcctatgccccaacgtccttggcagcaaaca---ggctatggaaattcttat 301
               |||||||||||||||| |||||||| |||||||| |||   |||||||||||| |||||
Sbjct: 131137 gtctcgaggcctatgccacaacgtccgtggcagcagacatctggctatggaaatacttat 131196

                   
Query: 302    ggagg 306
              |||||
Sbjct: 131197 ggagg 131201



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                        
Query: 308    acaggatacggatccaatatgtatagttcggctggtggatatggcagtacttatggta 365
              ||||| || |||||||||||||| ||||||   ||||||| ||||| ||| |||||||
Sbjct: 131279 acaggttatggatccaatatgtacagttcgtacggtggatttggcaatacctatggta 131336



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 149/183 (81%)
 Strand = Plus / Plus

                                                                            
Query: 124      gcctttcaaacccccatctggtggcagcactagtgatgtcgtcgaagcttctggtacagc 183
                ||||||||| |||||||| || || |||||||||||| |||||||||||||||| |||||
Sbjct: 32322187 gcctttcaagcccccatccgggggtagcactagtgatatcgtcgaagcttctggcacagc 32322246

                                                                            
Query: 184      taaacctggagaaaccattgctgctacagagaggaacatgtctgccaatgtaaataaccc 243
                 |||||||| |||    || ||||  ||||||| ||  |  || ||||||| || | | |
Sbjct: 32322247 aaaacctggggaagttgtttctgccgcagagagcaatgttgcttccaatgtgaacagcac 32322306

                                                                            
Query: 244      catctcgaggcctatgccccaacgtccttggcagcaaacaggctatggaaattcttatgg 303
                |||||| |||||| |||||| ||| |||||||||||   ||| || ||||||||||||||
Sbjct: 32322307 catctctaggcctgtgcccccacggccttggcagcagcaaggatacggaaattcttatgg 32322366

                   
Query: 304      agg 306
                |||
Sbjct: 32322367 agg 32322369



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 72       caccaccaaaaccgtgggaacgtgctgg 99
                ||||||| ||||| ||||||||||||||
Sbjct: 32322141 caccacccaaaccatgggaacgtgctgg 32322168



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>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence
          Length = 102751

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 149/183 (81%)
 Strand = Plus / Plus

                                                                         
Query: 124   gcctttcaaacccccatctggtggcagcactagtgatgtcgtcgaagcttctggtacagc 183
             ||||||||| |||||||| || || |||||||||||| |||||||||||||||| |||||
Sbjct: 55954 gcctttcaagcccccatccgggggtagcactagtgatatcgtcgaagcttctggcacagc 56013

                                                                         
Query: 184   taaacctggagaaaccattgctgctacagagaggaacatgtctgccaatgtaaataaccc 243
              |||||||| |||    || ||||  ||||||| ||  |  || ||||||| || | | |
Sbjct: 56014 aaaacctggggaagttgtttctgccgcagagagcaatgttgcttccaatgtgaacagcac 56073

                                                                         
Query: 244   catctcgaggcctatgccccaacgtccttggcagcaaacaggctatggaaattcttatgg 303
             |||||| |||||| |||||| ||| |||||||||||   ||| || ||||||||||||||
Sbjct: 56074 catctctaggcctgtgcccccacggccttggcagcagcaaggatacggaaattcttatgg 56133

                
Query: 304   agg 306
             |||
Sbjct: 56134 agg 56136



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 72    caccaccaaaaccgtgggaacgtgctgg 99
             ||||||| ||||| ||||||||||||||
Sbjct: 55908 caccacccaaaccatgggaacgtgctgg 55935



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 149/183 (81%)
 Strand = Plus / Plus

                                                                            
Query: 124      gcctttcaaacccccatctggtggcagcactagtgatgtcgtcgaagcttctggtacagc 183
                ||||||||| |||||||| || || |||||||||||| |||||||||||||||| |||||
Sbjct: 32412697 gcctttcaagcccccatccgggggtagcactagtgatatcgtcgaagcttctggcacagc 32412756

                                                                            
Query: 184      taaacctggagaaaccattgctgctacagagaggaacatgtctgccaatgtaaataaccc 243
                 |||||||| |||    || ||||  ||||||| ||  |  || ||||||| || | | |
Sbjct: 32412757 aaaacctggggaagttgtttctgccgcagagagcaatgttgcttccaatgtgaacagcac 32412816

                                                                            
Query: 244      catctcgaggcctatgccccaacgtccttggcagcaaacaggctatggaaattcttatgg 303
                |||||| |||||| |||||| ||| |||||||||||   ||| || ||||||||||||||
Sbjct: 32412817 catctctaggcctgtgcccccacggccttggcagcagcaaggatacggaaattcttatgg 32412876

                   
Query: 304      agg 306
                |||
Sbjct: 32412877 agg 32412879



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 72       caccaccaaaaccgtgggaacgtgctgg 99
                ||||||| ||||| ||||||||||||||
Sbjct: 32412651 caccacccaaaccatgggaacgtgctgg 32412678



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>dbj|AK073187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033010B08, full
           insert sequence
          Length = 1085

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 149/183 (81%)
 Strand = Plus / Plus

                                                                       
Query: 124 gcctttcaaacccccatctggtggcagcactagtgatgtcgtcgaagcttctggtacagc 183
           ||||||||| |||||||| || || |||||||||||| |||||||||||||||| |||||
Sbjct: 201 gcctttcaagcccccatccgggggtagcactagtgatatcgtcgaagcttctggcacagc 260

                                                                       
Query: 184 taaacctggagaaaccattgctgctacagagaggaacatgtctgccaatgtaaataaccc 243
            |||||||| |||    || ||||  ||||||| ||  |  || ||||||| || | | |
Sbjct: 261 aaaacctggggaagttgtttctgccgcagagagcaatgttgcttccaatgtgaacagcac 320

                                                                       
Query: 244 catctcgaggcctatgccccaacgtccttggcagcaaacaggctatggaaattcttatgg 303
           |||||| |||||| |||||| ||| |||||||||||   ||| || ||||||||||||||
Sbjct: 321 catctctaggcctgtgcccccacggccttggcagcagcaaggatacggaaattcttatgg 380

              
Query: 304 agg 306
           |||
Sbjct: 381 agg 383



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 72  caccaccaaaaccgtgggaacgtgctgg 99
           ||||||| ||||| ||||||||||||||
Sbjct: 155 caccacccaaaccatgggaacgtgctgg 182



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>dbj|AK061286.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H02, full
           insert sequence
          Length = 1207

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 149/183 (81%)
 Strand = Plus / Plus

                                                                       
Query: 124 gcctttcaaacccccatctggtggcagcactagtgatgtcgtcgaagcttctggtacagc 183
           ||||||||| |||||||| || || |||||||||||| |||||||||||||||| |||||
Sbjct: 205 gcctttcaagcccccatccgggggtagcactagtgatatcgtcgaagcttctggcacagc 264

                                                                       
Query: 184 taaacctggagaaaccattgctgctacagagaggaacatgtctgccaatgtaaataaccc 243
            |||||||| |||    || ||||  ||||||| ||  |  || ||||||| || | | |
Sbjct: 265 aaaacctggggaagttgtttctgccgcagagagcaatgttgcttccaatgtgaacagcac 324

                                                                       
Query: 244 catctcgaggcctatgccccaacgtccttggcagcaaacaggctatggaaattcttatgg 303
           |||||| |||||| |||||| ||| |||||||||||   ||| || ||||||||||||||
Sbjct: 325 catctctaggcctgtgcccccacggccttggcagcagcaaggatacggaaattcttatgg 384

              
Query: 304 agg 306
           |||
Sbjct: 385 agg 387



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 72  caccaccaaaaccgtgggaacgtgctgg 99
           ||||||| ||||| ||||||||||||||
Sbjct: 159 caccacccaaaccatgggaacgtgctgg 186



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>gb|AY104586.1| Zea mays PCO074858 mRNA sequence
          Length = 1303

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                       
Query: 125 cctttcaaacccccatctggtggcagcactagtgatgtcgtcgaagcttctggtacagct 184
           |||||||| |||||||||||||| ||||| |||||||| || |||||||||||||| |||
Sbjct: 123 cctttcaagcccccatctggtggaagcaccagtgatgttgttgaagcttctggtaccgct 182

                
Query: 185 aaacc 189
           |||||
Sbjct: 183 aaacc 187



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 251 aggcctatgccccaacgtccttggcagcaaacaggctatggaaa 294
           ||||||||||| || || ||||||||||| ||||| ||||||||
Sbjct: 249 aggcctatgccacagcggccttggcagcagacaggttatggaaa 292



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 317 ggatccaatatgtatagttcggctggtggatatggcagtacttatggta 365
           |||||||| |||||||||||   |||||||| |||||  ||||||||||
Sbjct: 312 ggatccaacatgtatagttcatatggtggatttggcaacacttatggta 360



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>gb|BT017370.1| Zea mays clone EL01N0324H05.c mRNA sequence
          Length = 1450

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                       
Query: 123 tgcctttcaaacccccatctggtggcagcactagtgatgtcgtcgaagcttctggtacag 182
           ||||||| || || || |||||||| ||||| |||||||| || ||||||||||| ||||
Sbjct: 331 tgccttttaagccgccctctggtggtagcaccagtgatgttgttgaagcttctgggacag 390

                         
Query: 183 ctaaacctggagaa 196
           | |||| |||||||
Sbjct: 391 caaaacatggagaa 404



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 72  caccaccaaaaccgtgggaacgtgc 96
           |||| ||||||||||||||||||||
Sbjct: 286 cacctccaaaaccgtgggaacgtgc 310



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>gb|AY108942.1| Zea mays PCO138129 mRNA sequence
          Length = 1086

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 140 tctggtggcagcactagtgatgtcgtcgaagcttctggtacagctaaacctggagaa 196
           |||||||| ||||| |||||||| || ||||||||||| ||||| |||| |||||||
Sbjct: 14  tctggtggtagcaccagtgatgttgttgaagcttctgggacagcaaaacatggagaa 70



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>gb|AY301324.1| Antheraea rosemariae period mRNA, partial cds
          Length = 948

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 287 tatggaaattcttatggaggaacag 311
           |||||||||||||||||||||||||
Sbjct: 840 tatggaaattcttatggaggaacag 864



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>gb|AC149774.2| Bos taurus  BAC CH240-10G15 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 186916

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 274   gcagcaaacaggctatggaaattctta 300
             |||||||||||||||||||||| ||||
Sbjct: 59798 gcagcaaacaggctatggaaatgctta 59824



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>gb|AF239749.1|AF239749 Xanthomonas albilineans albicidin multifunctional polyketide-peptide
             synthase (xabB) gene, complete cds
          Length = 16511

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 95    gctggggctgagggaacatccgg 117
             |||||||||||||||||||||||
Sbjct: 12950 gctggggctgagggaacatccgg 12972



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>gb|AC124637.10| Mus musculus chromosome 15, clone RP23-458B6, complete sequence
          Length = 200607

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 135    ccccatctggtggcagcacta 155
              |||||||||||||||||||||
Sbjct: 158283 ccccatctggtggcagcacta 158263



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>gb|AC140489.2| Mus musculus BAC clone RP24-144C10 from chromosome 1, complete sequence
          Length = 194368

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 191    ggagaaaccattgctgctaca 211
              |||||||||||||||||||||
Sbjct: 183013 ggagaaaccattgctgctaca 183033



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>gb|AY301317.1| Antheraea lampei period mRNA, partial cds
          Length = 948

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 287 tatggaaattcttatggaggaacag 311
           |||||| ||||||||||||||||||
Sbjct: 840 tatggagattcttatggaggaacag 864



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>gb|AY301314.1| Antheraea helferi period mRNA, partial cds
          Length = 1063

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 287 tatggaaattcttatggaggaacag 311
           |||||| ||||||||||||||||||
Sbjct: 901 tatggagattcttatggaggaacag 925



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>gb|AC124975.13| Mus musculus chromosome 1, clone RP23-262M12, complete sequence
          Length = 219930

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 191    ggagaaaccattgctgctaca 211
              |||||||||||||||||||||
Sbjct: 212444 ggagaaaccattgctgctaca 212424



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>emb|X81998.1|ANAREAGEN A.niger areA gene
          Length = 4298

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   aacgtgctggggctgaggga 109
            ||||||||||||||||||||
Sbjct: 2839 aacgtgctggggctgaggga 2820



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>emb|BX294178.13| Zebrafish DNA sequence from clone CH211-271C18 in linkage group 7,
             complete sequence
          Length = 131441

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   acccccatctggtggcagca 152
             ||||||||||||||||||||
Sbjct: 89075 acccccatctggtggcagca 89094



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>gb|AC012321.8| Homo sapiens chromosome 16 clone RP11-311C24, complete sequence
          Length = 131694

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   atggaaattcttatggagga 307
             ||||||||||||||||||||
Sbjct: 27575 atggaaattcttatggagga 27594



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>emb|BX005202.14| Zebrafish DNA sequence from clone DKEY-224N5 in linkage group 13,
              complete sequence
          Length = 220733

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    acccccatctggtggcagca 152
              ||||||||||||||||||||
Sbjct: 100369 acccccatctggtggcagca 100388



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>emb|X99940.1|ANAREAG A.niger areA gene
          Length = 4298

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   aacgtgctggggctgaggga 109
            ||||||||||||||||||||
Sbjct: 2839 aacgtgctggggctgaggga 2820


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,191,648
Number of Sequences: 3902068
Number of extensions: 3191648
Number of successful extensions: 46471
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46360
Number of HSP's gapped (non-prelim): 103
length of query: 365
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 343
effective length of database: 17,147,199,772
effective search space: 5881489521796
effective search space used: 5881489521796
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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