ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet70d04 |
|---|---|
| Clone Library Name | barley_pub |
>PPT1_BOVIN (P45478) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 51.6 bits (122), Expect = 1e-06 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 6/106 (5%) Frame = +1 Query: 163 VPFVVLHGIGDQCANRGVAEFTRLLADWSAADGHCLEIGSGTW------DSWLMPLNQQA 324 +P V+ HG+GD C N + + + H L + G +S+ + +N Q Sbjct: 33 LPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQV 92 Query: 325 QVICNKVKEMKELSGGYNIVGLSQGNLIGRAVVEYCDDGPPVKISS 462 +C + + +L GYN +G SQG RAV + C P V + S Sbjct: 93 TTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLIS 138
>PPT1_MOUSE (O88531) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 50.1 bits (118), Expect = 3e-06 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 6/105 (5%) Frame = +1 Query: 166 PFVVLHGIGDQCANRGVAEFTRLLADWSAADGHCL--EIGSGTWD----SWLMPLNQQAQ 327 P V+ HG+GD C N + + + + L EIG + S+ + +N Q Sbjct: 34 PLVIWHGMGDSCCNPMSMGVIKKMVEKEIPGIYVLSLEIGKNMMEDVENSFFLNVNVQVN 93 Query: 328 VICNKVKEMKELSGGYNIVGLSQGNLIGRAVVEYCDDGPPVKISS 462 ++C +++ +L GYN +G SQG RAV + C P + + S Sbjct: 94 MVCQILEKDPKLQQGYNAIGFSQGGQFLRAVAQRCPTPPMMTLIS 138
>PPT1_MACFA (Q8HXW6) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 49.7 bits (117), Expect = 4e-06 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 6/106 (5%) Frame = +1 Query: 163 VPFVVLHGIGDQCANRGVAEFTRLLADWSAADGHCLEIGSGTW------DSWLMPLNQQA 324 +P V+ HG+GD C N + + + + L + G +S+ + +N Q Sbjct: 33 LPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGKTLMEDVENSFFLNVNSQV 92 Query: 325 QVICNKVKEMKELSGGYNIVGLSQGNLIGRAVVEYCDDGPPVKISS 462 +C + + +L GYN +G SQG RAV + C P + + S Sbjct: 93 TTVCQTLAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMINLIS 138
>PPT1_HUMAN (P50897) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 49.7 bits (117), Expect = 4e-06 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 6/106 (5%) Frame = +1 Query: 163 VPFVVLHGIGDQCANRGVAEFTRLLADWSAADGHCLEIGSGTW------DSWLMPLNQQA 324 +P V+ HG+GD C N + + + + L + G +S+ + +N Q Sbjct: 33 LPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGKTLMEDVENSFFLNVNSQV 92 Query: 325 QVICNKVKEMKELSGGYNIVGLSQGNLIGRAVVEYCDDGPPVKISS 462 +C + + +L GYN +G SQG RAV + C P + + S Sbjct: 93 TTVCQALAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMINLIS 138
>PPT1_RAT (P45479) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 46.6 bits (109), Expect = 4e-05 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Frame = +1 Query: 166 PFVVLHGIGDQCANRGVAEFTRLLADWSAADGHCLEIGSG------TWDSWLMPLNQQAQ 327 P V+ HG+GD C N + + + + L + G +S+ + +N Q Sbjct: 34 PLVIWHGMGDSCCNPMSMGSIKKMVEKEIPGIYVLSLEIGKNMVEDVENSFFLNVNLQVG 93 Query: 328 VICNKVKEMKELSGGYNIVGLSQGNLIGRAVVEYCDDGPPVKISS 462 + C +++ +L GYN +G SQG RAV + C P + + S Sbjct: 94 MACQILEKDPKLQHGYNAIGFSQGGQFLRAVAQRCPTPPMMTLIS 138
>MVP_MOUSE (Q9EQK5) Major vault protein (MVP)| Length = 860 Score = 32.3 bits (72), Expect = 0.71 Identities = 18/46 (39%), Positives = 26/46 (56%) Frame = +3 Query: 291 GLLAHASQPTGSSHLQQGEGDERAERRL*HRWPVSGELDRSGSSRV 428 GLL A QP L++GEG+ER + RW + G L+ S++V Sbjct: 330 GLLLKALQP-----LEEGEGEERVAHQAGDRWLIRGPLEYVPSAKV 370
>KPRS3_ORYSA (Q8S2E5) Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6.1)| (Phosphoribosyl pyrophosphate synthetase 3) Length = 409 Score = 30.0 bits (66), Expect = 3.5 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +1 Query: 283 GTWDSWLMPLNQQAQVICNKVKEMKELSGGYNIVGLSQGNLIGRAVV 423 G W + L V+CNKV+E G IV + +G+ GR VV Sbjct: 275 GAWKRFYKQLQHFPMVVCNKVRE-----GEQRIVRIKEGDPRGRHVV 316
>ENV_HV1S1 (P19550) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 847 Score = 29.3 bits (64), Expect = 6.0 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -3 Query: 83 MGPRETDGTTSLPAEIDRVARRW 15 +GP T+GT +LP I ++ RW Sbjct: 395 IGPNNTNGTITLPCRIKQIINRW 417
>RUVC_BIFLO (Q8G6B9) Crossover junction endodeoxyribonuclease ruvC (EC| 3.1.22.4) (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC) Length = 194 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -3 Query: 314 LRGMSQESHVPLPISRQWPSAADQSARRRVN 222 L+G +E H+ RQW AA S RRR+N Sbjct: 160 LQGGEREQHLTAA-QRQWAEAAQNSTRRRIN 189
>SYI_CHLTE (Q8KFL5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1084 Score = 28.9 bits (63), Expect = 7.8 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +1 Query: 235 LADWSAADGHCLEIGSGTWDSWLMPLNQQAQVICNKVKEMKELSG 369 LADW AD C+ D+ L ++AQ+I + V+ M+E +G Sbjct: 817 LADWPVADESCI-------DAALEERMKKAQIITSLVRTMREKAG 854
>B2L12_HUMAN (Q9HB09) Bcl-2-related proline-rich protein (Bcl-2-like 12 protein)| Length = 334 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/54 (35%), Positives = 22/54 (40%) Frame = -3 Query: 389 RPTML*PPLSSFISFTLLQMT*ACWLRGMSQESHVPLPISRQWPSAADQSARRR 228 RP L PPL F+ F ACW R M E +P +W RRR Sbjct: 3 RPAGLFPPLCPFLGFR----PEACWERHMQIERAPSVPPFLRWAGYRPGPVRRR 52 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,446,878 Number of Sequences: 219361 Number of extensions: 907952 Number of successful extensions: 3030 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2972 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3025 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
