ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet70b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X63052.1|HVCP29 Hordeum vulgare gene for CP29 precursor for ... 575 e-161
2dbj|AK098872.1| Oryza sativa (japonica cultivar-group) cDNA clon... 276 5e-71
3dbj|AK061295.1| Oryza sativa (japonica cultivar-group) cDNA clon... 276 5e-71
4dbj|AK104824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 1e-68
5gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome... 163 5e-37
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 163 5e-37
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 163 5e-37
8gb|AY105650.1| Zea mays PCO135935 mRNA sequence 127 3e-26
9gb|U23189.1|ZMU23189 Zea mays chlorophyll a/b-binding apoprotein... 127 3e-26
10gb|U23188.1|ZMU23188 Zea mays chlorophyll a/b-binding apoprotein... 127 3e-26
11gb|BT014450.1| Lycopersicon esculentum clone 133776F, mRNA sequence 62 1e-06
12emb|X95727.1|BJMCAB1GE B.juncea mRNA for chlorophyll a/b-binding... 58 2e-05
13ref|XM_368803.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 46 0.088
14gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 44 0.35
15emb|Y14197.2|RSY14197 Rhodobacter sphaeroides uptake hydrogenase... 44 0.35
16ref|NM_117102.3| Arabidopsis thaliana LHCB5 (LIGHT HARVESTING CO... 42 1.4
17gb|AF339718.1| Arabidopsis thaliana putative chlorophyll a/b-bin... 42 1.4
18gb|AF326900.1| Arabidopsis thaliana putative chlorophyll a/b-bin... 42 1.4
19gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome 42 1.4
20gb|AY070466.1| Arabidopsis thaliana AT4g10340/F24G24_140 mRNA, c... 42 1.4
21gb|AF439282.1|AF439282 Retama raetam chl a/b-binding protein mRN... 42 1.4
22gb|AF424597.1|AF424597 Arabidopsis thaliana AT4g10340/F24G24_140... 42 1.4
23gb|AY054126.1| Arabidopsis thaliana AT4g10340/F24G24_140 mRNA, c... 42 1.4
24gb|AF380631.1|AF380631 Arabidopsis thaliana AT4g10340/F24G24_140... 42 1.4
25emb|BX829238.1|CNS0A4DW Arabidopsis thaliana Full-length cDNA Co... 42 1.4
26emb|BX826540.1|CNS0A4GD Arabidopsis thaliana Full-length cDNA Co... 42 1.4
27emb|BX826592.1|CNS0A355 Arabidopsis thaliana Full-length cDNA Co... 42 1.4
28gb|AY087939.1| Arabidopsis thaliana clone 39765 mRNA, complete s... 42 1.4
29gb|AF134129.1| Arabidopsis thaliana Lhcb5 protein (Lhcb5) mRNA, ... 42 1.4
30gb|AY111693.1| Zea mays CL6746_1 mRNA sequence 42 1.4
31gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 5.4
32gb|AY509120.1| Streptomyces bikiniensis strain NRRL 2737 chalcom... 40 5.4
33ref|XM_527798.1| PREDICTED: Pan troglodytes similar to hypotheti... 40 5.4
34gb|AC163335.6| Mus musculus chromosome 7, clone RP24-149G13, com... 40 5.4
35emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 5.4
36gb|AC004921.2| Homo sapiens PAC clone RP5-899E9 from 7, complete... 40 5.4
37gb|AC142324.1| Pan troglodytes BAC clone RP43-73K6 from 7, compl... 40 5.4
38gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 5.4
39emb|AL096774.9|HSDJ144C9 Human DNA sequence from clone RP1-144C9... 40 5.4
40gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 40 5.4
41gb|AE011785.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.4
42gb|AC025946.9| Homo sapiens chromosome 10 clone RP11-543F8, comp... 40 5.4
43dbj|AK047546.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 5.4
44gb|AC113306.6| Mus musculus chromosome 7, clone RP23-434A16, com... 40 5.4
45gb|AC154749.2| Mus musculus BAC clone RP24-399C21 from 17, compl... 40 5.4
46dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 5.4 
>emb|X63052.1|HVCP29 Hordeum vulgare gene for CP29 precursor for core chlorophyll a/b
           binding (CAB) protein of photosystem II (PSII)
          Length = 2689

 Score =  575 bits (290), Expect = e-161
 Identities = 293/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccatcacatcctcccttcctgctgagctgagcacgcccctctgctgcacgccccttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 acccatcacatcctcccttcctgctgagctgagcacgcccctctgctgcacgccccttct 750

                                                                       
Query: 61  ccctcccaaccttgggcttgaggcaatggcggcgctcgctccgaccaagatgctcggcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ccctcccaaccttgggcttgaggcaatggcggcgctcgctccgaccaagatgctcggcac 810

                                                                       
Query: 121 ccggctcgacttcgccggctcctccaggtatgccacagcggcgccgactgccggcgcgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ccggctcgacttcgccggctcctccaggtatgccacagcggcgccgactgccggcgcgca 870

                                                                       
Query: 181 gaagatcgtctccctcttcgaccgcttcaacaaggagcctgccccgaagccgaagcccgc 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 871 gaagatcgtctccctcttcgaccgcttcaacaagaagcctgccccgaagccgaagcccgc 930

                                                                 
Query: 241 gcccgtggccacctcgagcgccggcatcgacgacgaactcgccaagtggtacgg 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 gcccgtggccacctcgagcgccggcatcgacgacgaactcgccaagtggtacgg 984



 Score =  170 bits (86), Expect = 2e-39
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                        
Query: 293  ggccctgacaggaggatctacttgcccaacggcctccttgaccggtcggaggtgccggag 352
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1087 ggccctgacaggaggatctacttgcccaacggcctccttgaccggtcggaggtgccggag 1146

                                      
Query: 353  tacctcaacggcgaggttcccggaga 378
            ||||||||||||||||||||||||||
Sbjct: 1147 tacctcaacggcgaggttcccggaga 1172



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                        
Query: 379  ctacggctacgatccttttggtctgggc 406
            ||||||||||||||||||||||||||||
Sbjct: 1382 ctacggctacgatccttttggtctgggc 1409
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>dbj|AK098872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001B10, full
           insert sequence
          Length = 1101

 Score =  276 bits (139), Expect = 5e-71
 Identities = 279/327 (85%), Gaps = 9/327 (2%)
 Strand = Plus / Plus

                                                                       
Query: 73  tgggcttgaggcaatggcggcgctcgctccgaccaagatgctcggcacccggctcgactt 132
           ||||| |||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct: 68  tgggcctgaggcgatggcggcgctcgccccgtccaagatgctcggcacccggctcaactt 127

                                                                       
Query: 133 cgccggctcctccaggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctc 192
           ||||||||||||| | || ||||| ||||| |||||  |||| |||||||||||||||||
Sbjct: 128 cgccggctcctcccgctacgccaccgcggcaccgaccaccggagcgcagaagatcgtctc 187

                                                                       
Query: 193 cctcttcgaccgcttcaacaaggagcctgccccgaagccgaagcccgcgcccgtggccac 252
           |||||         ||| |||| |||| ||||||||||| ||||||||  ||||  || |
Sbjct: 188 cctct---------tcagcaagaagcccgccccgaagcccaagcccgccgccgtcacctc 238

                                                                       
Query: 253 ctcgagcgccggcatcgacgacgaactcgccaagtggtacggccctgacaggaggatcta 312
           ||||||| ||| ||||| ||| || |||||||||||||||||||||||||||||||||| 
Sbjct: 239 ctcgagccccgacatcggcgatgagctcgccaagtggtacggccctgacaggaggatctt 298

                                                                       
Query: 313 cttgcccaacggcctccttgaccggtcggaggtgccggagtacctcaacggcgaggttcc 372
           ||||||  | || ||||| ||||| || ||||||||||| ||||||||||| ||||| ||
Sbjct: 299 cttgccggagggtctcctggaccgctcagaggtgccggactacctcaacggagaggtccc 358

                                      
Query: 373 cggagactacggctacgatccttttgg 399
           |||||||||||||||||| ||||||||
Sbjct: 359 cggagactacggctacgacccttttgg 385
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>dbj|AK061295.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D05, full
           insert sequence
          Length = 1186

 Score =  276 bits (139), Expect = 5e-71
 Identities = 279/327 (85%), Gaps = 9/327 (2%)
 Strand = Plus / Plus

                                                                       
Query: 73  tgggcttgaggcaatggcggcgctcgctccgaccaagatgctcggcacccggctcgactt 132
           ||||| |||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct: 79  tgggcctgaggcgatggcggcgctcgccccgtccaagatgctcggcacccggctcaactt 138

                                                                       
Query: 133 cgccggctcctccaggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctc 192
           ||||||||||||| | || ||||| ||||| |||||  |||| |||||||||||||||||
Sbjct: 139 cgccggctcctcccgctacgccaccgcggcaccgaccaccggagcgcagaagatcgtctc 198

                                                                       
Query: 193 cctcttcgaccgcttcaacaaggagcctgccccgaagccgaagcccgcgcccgtggccac 252
           |||||         ||| |||| |||| ||||||||||| ||||||||  ||||  || |
Sbjct: 199 cctct---------tcagcaagaagcccgccccgaagcccaagcccgccgccgtcacctc 249

                                                                       
Query: 253 ctcgagcgccggcatcgacgacgaactcgccaagtggtacggccctgacaggaggatcta 312
           ||||||| ||| ||||| ||| || |||||||||||||||||||||||||||||||||| 
Sbjct: 250 ctcgagccccgacatcggcgatgagctcgccaagtggtacggccctgacaggaggatctt 309

                                                                       
Query: 313 cttgcccaacggcctccttgaccggtcggaggtgccggagtacctcaacggcgaggttcc 372
           ||||||  | || ||||| ||||| || ||||||||||| ||||||||||| ||||| ||
Sbjct: 310 cttgccggagggtctcctggaccgctcagaggtgccggactacctcaacggagaggtccc 369

                                      
Query: 373 cggagactacggctacgatccttttgg 399
           |||||||||||||||||| ||||||||
Sbjct: 370 cggagactacggctacgacccttttgg 396
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>dbj|AK104824.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F05, full
           insert sequence
          Length = 1157

 Score =  268 bits (135), Expect = 1e-68
 Identities = 278/327 (85%), Gaps = 9/327 (2%)
 Strand = Plus / Plus

                                                                       
Query: 73  tgggcttgaggcaatggcggcgctcgctccgaccaagatgctcggcacccggctcgactt 132
           ||||| |||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct: 78  tgggcctgaggcgatggcggcgctcgccccgtccaagatgctcggcacccggctcaactt 137

                                                                       
Query: 133 cgccggctcctccaggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctc 192
           ||||||||||||| | || ||||| ||||| |||||  |||| |||||||||||||||||
Sbjct: 138 cgccggctcctcccgctacgccaccgcggcaccgaccaccggagcgcagaagatcgtctc 197

                                                                       
Query: 193 cctcttcgaccgcttcaacaaggagcctgccccgaagccgaagcccgcgcccgtggccac 252
           |||||         ||| |||| |||| ||||||||||| ||||||||  ||||  || |
Sbjct: 198 cctct---------tcagcaagaagcccgccccgaagcccaagcccgccgccgtcacctc 248

                                                                       
Query: 253 ctcgagcgccggcatcgacgacgaactcgccaagtggtacggccctgacaggaggatcta 312
           ||||||| ||| ||||| ||| || |||||| ||||||||||||||||||||||||||| 
Sbjct: 249 ctcgagccccgacatcggcgatgagctcgccgagtggtacggccctgacaggaggatctt 308

                                                                       
Query: 313 cttgcccaacggcctccttgaccggtcggaggtgccggagtacctcaacggcgaggttcc 372
           ||||||  | || ||||| ||||| || ||||||||||| ||||||||||| ||||| ||
Sbjct: 309 cttgccggagggtctcctggaccgctcagaggtgccggactacctcaacggagaggtccc 368

                                      
Query: 373 cggagactacggctacgatccttttgg 399
           |||||||||||||||||| ||||||||
Sbjct: 369 cggagactacggctacgacccttttgg 395
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>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0091I11, complete sequence
          Length = 135993

 Score =  163 bits (82), Expect = 5e-37
 Identities = 186/222 (83%), Gaps = 9/222 (4%)
 Strand = Plus / Plus

                                                                         
Query: 73    tgggcttgaggcaatggcggcgctcgctccgaccaagatgctcggcacccggctcgactt 132
             ||||| |||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct: 38104 tgggcctgaggcgatggcggcgctcgccccgtccaagatgctcggcacccggctcaactt 38163

                                                                         
Query: 133   cgccggctcctccaggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctc 192
             ||||||||||||| | || ||||| ||||| |||||  |||| |||||||||||||||||
Sbjct: 38164 cgccggctcctcccgctacgccaccgcggcaccgaccaccggagcgcagaagatcgtctc 38223

                                                                         
Query: 193   cctcttcgaccgcttcaacaaggagcctgccccgaagccgaagcccgcgcccgtggccac 252
             |||||         ||| |||| |||| ||||||||||| ||||||||  ||||  || |
Sbjct: 38224 cctct---------tcagcaagaagcccgccccgaagcccaagcccgccgccgtcacctc 38274

                                                       
Query: 253   ctcgagcgccggcatcgacgacgaactcgccaagtggtacgg 294
             ||||||| ||| ||||| ||| || |||||||||||||||||
Sbjct: 38275 ctcgagccccgacatcggcgatgagctcgccaagtggtacgg 38316



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                         
Query: 293   ggccctgacaggaggatctacttgcccaacggcctccttgaccggtcggaggtgccggag 352
             ||||||||||||||||||| ||||||  | || ||||| ||||| || ||||||||||| 
Sbjct: 38427 ggccctgacaggaggatcttcttgccggagggtctcctggaccgctcagaggtgccggac 38486

                                       
Query: 353   tacctcaacggcgaggttcccggaga 378
             ||||||||||| ||||| ||||||||
Sbjct: 38487 tacctcaacggagaggtccccggaga 38512
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  163 bits (82), Expect = 5e-37
 Identities = 186/222 (83%), Gaps = 9/222 (4%)
 Strand = Plus / Plus

                                                                           
Query: 73      tgggcttgaggcaatggcggcgctcgctccgaccaagatgctcggcacccggctcgactt 132
               ||||| |||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct: 7579018 tgggcctgaggcgatggcggcgctcgccccgtccaagatgctcggcacccggctcaactt 7579077

                                                                           
Query: 133     cgccggctcctccaggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctc 192
               ||||||||||||| | || ||||| ||||| |||||  |||| |||||||||||||||||
Sbjct: 7579078 cgccggctcctcccgctacgccaccgcggcaccgaccaccggagcgcagaagatcgtctc 7579137

                                                                           
Query: 193     cctcttcgaccgcttcaacaaggagcctgccccgaagccgaagcccgcgcccgtggccac 252
               |||||         ||| |||| |||| ||||||||||| ||||||||  ||||  || |
Sbjct: 7579138 cctct---------tcagcaagaagcccgccccgaagcccaagcccgccgccgtcacctc 7579188

                                                         
Query: 253     ctcgagcgccggcatcgacgacgaactcgccaagtggtacgg 294
               ||||||| ||| ||||| ||| || |||||||||||||||||
Sbjct: 7579189 ctcgagccccgacatcggcgatgagctcgccaagtggtacgg 7579230



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                           
Query: 293     ggccctgacaggaggatctacttgcccaacggcctccttgaccggtcggaggtgccggag 352
               ||||||||||||||||||| ||||||  | || ||||| ||||| || ||||||||||| 
Sbjct: 7579341 ggccctgacaggaggatcttcttgccggagggtctcctggaccgctcagaggtgccggac 7579400

                                         
Query: 353     tacctcaacggcgaggttcccggaga 378
               ||||||||||| ||||| ||||||||
Sbjct: 7579401 tacctcaacggagaggtccccggaga 7579426
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  163 bits (82), Expect = 5e-37
 Identities = 186/222 (83%), Gaps = 9/222 (4%)
 Strand = Plus / Plus

                                                                           
Query: 73      tgggcttgaggcaatggcggcgctcgctccgaccaagatgctcggcacccggctcgactt 132
               ||||| |||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct: 7649105 tgggcctgaggcgatggcggcgctcgccccgtccaagatgctcggcacccggctcaactt 7649164

                                                                           
Query: 133     cgccggctcctccaggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctc 192
               ||||||||||||| | || ||||| ||||| |||||  |||| |||||||||||||||||
Sbjct: 7649165 cgccggctcctcccgctacgccaccgcggcaccgaccaccggagcgcagaagatcgtctc 7649224

                                                                           
Query: 193     cctcttcgaccgcttcaacaaggagcctgccccgaagccgaagcccgcgcccgtggccac 252
               |||||         ||| |||| |||| ||||||||||| ||||||||  ||||  || |
Sbjct: 7649225 cctct---------tcagcaagaagcccgccccgaagcccaagcccgccgccgtcacctc 7649275

                                                         
Query: 253     ctcgagcgccggcatcgacgacgaactcgccaagtggtacgg 294
               ||||||| ||| ||||| ||| || |||||||||||||||||
Sbjct: 7649276 ctcgagccccgacatcggcgatgagctcgccaagtggtacgg 7649317



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                           
Query: 293     ggccctgacaggaggatctacttgcccaacggcctccttgaccggtcggaggtgccggag 352
               ||||||||||||||||||| ||||||  | || ||||| ||||| || ||||||||||| 
Sbjct: 7649428 ggccctgacaggaggatcttcttgccggagggtctcctggaccgctcagaggtgccggac 7649487

                                         
Query: 353     tacctcaacggcgaggttcccggaga 378
               ||||||||||| ||||| ||||||||
Sbjct: 7649488 tacctcaacggagaggtccccggaga 7649513
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>gb|AY105650.1| Zea mays PCO135935 mRNA sequence
          Length = 1366

 Score =  127 bits (64), Expect = 3e-26
 Identities = 118/136 (86%)
 Strand = Plus / Plus

                                                                       
Query: 271 cgacgaactcgccaagtggtacggccctgacaggaggatctacttgcccaacggcctcct 330
           |||||| |||||||||||||| || |||||||||||||||||| ||||  | || ||  |
Sbjct: 352 cgacgagctcgccaagtggtatggtcctgacaggaggatctacctgccggatgggctgtt 411

                                                                       
Query: 331 tgaccggtcggaggtgccggagtacctcaacggcgaggttcccggagactacggctacga 390
            |||||||||||||||||||||||||||| ||| ||||| || |||||||| ||||||||
Sbjct: 412 ggaccggtcggaggtgccggagtacctcaccggagaggtccctggagactatggctacga 471

                           
Query: 391 tccttttggtctgggc 406
            |||||||| ||||||
Sbjct: 472 cccttttggcctgggc 487



 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 94/112 (83%)
 Strand = Plus / Plus

                                                                       
Query: 84  caatggcggcgctcgctccgaccaagatgctcggcacccggctcgacttcgccggctcct 143
           |||||||||||||||||||  ||||||| || ||||||| |||| ||||||| |||||||
Sbjct: 174 caatggcggcgctcgctccatccaagattctgggcacccagctcaacttcgcgggctcct 233

                                                               
Query: 144 ccaggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctccct 195
           || | || ||||| || ||||| || || || || |||||||| ||||||||
Sbjct: 234 cccgctacgccaccgcagcgcccaccgcgggggctcagaagattgtctccct 285
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>gb|U23189.1|ZMU23189 Zea mays chlorophyll a/b-binding apoprotein CP26 (Lhcb5-2) mRNA,
           complete cds
          Length = 1073

 Score =  127 bits (64), Expect = 3e-26
 Identities = 118/136 (86%)
 Strand = Plus / Plus

                                                                       
Query: 271 cgacgaactcgccaagtggtacggccctgacaggaggatctacttgcccaacggcctcct 330
           |||||| ||||||||||||||||| |||||||||||||||||| ||||  | || ||  |
Sbjct: 208 cgacgagctcgccaagtggtacggtcctgacaggaggatctacctgccggatgggctgtt 267

                                                                       
Query: 331 tgaccggtcggaggtgccggagtacctcaacggcgaggttcccggagactacggctacga 390
            |||||||||||||| ||||||||||||| ||| ||||| || |||||||| ||||||||
Sbjct: 268 ggaccggtcggaggtaccggagtacctcaccggagaggtccctggagactatggctacga 327

                           
Query: 391 tccttttggtctgggc 406
            |||||||| ||||||
Sbjct: 328 cccttttggcctgggc 343



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 95/112 (84%)
 Strand = Plus / Plus

                                                                       
Query: 84  caatggcggcgctcgctccgaccaagatgctcggcacccggctcgacttcgccggctcct 143
           |||||||||||||||||||  ||||||| || ||||||| |||| |||||||||||||||
Sbjct: 30  caatggcggcgctcgctccatccaagattctgggcacccagctcaacttcgccggctcct 89

                                                               
Query: 144 ccaggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctccct 195
           || | || ||||| || ||||| || || || || |||||||| ||||||||
Sbjct: 90  cccgctacgccaccgcagcgcccaccgcgggggctcagaagattgtctccct 141
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>gb|U23188.1|ZMU23188 Zea mays chlorophyll a/b-binding apoprotein CP26 (Lhcb5-1) mRNA,
           complete cds
          Length = 957

 Score =  127 bits (64), Expect = 3e-26
 Identities = 118/136 (86%)
 Strand = Plus / Plus

                                                                       
Query: 271 cgacgaactcgccaagtggtacggccctgacaggaggatctacttgcccaacggcctcct 330
           |||||| ||||||||||||||||| |||||||||||||||||| ||||  | || ||| |
Sbjct: 210 cgacgagctcgccaagtggtacggtcctgacaggaggatctacctgccggatgggctctt 269

                                                                       
Query: 331 tgaccggtcggaggtgccggagtacctcaacggcgaggttcccggagactacggctacga 390
            ||||| |||||||| ||||||||||||| ||| ||||| || |||||||| ||||||||
Sbjct: 270 ggaccgctcggaggtaccggagtacctcaccggagaggtccctggagactatggctacga 329

                           
Query: 391 tccttttggtctgggc 406
            |||||||| ||||||
Sbjct: 330 cccttttggcctgggc 345



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 95/114 (83%)
 Strand = Plus / Plus

                                                                       
Query: 86  atggcggcgctcgctccgaccaagatgctcggcacccggctcgacttcgccggctcctcc 145
           |||||||| || |||||  ||||||| || ||||||  |||| |||||||||||||||||
Sbjct: 34  atggcggctcttgctccatccaagattctgggcaccaagctcaacttcgccggctcctcc 93

                                                                 
Query: 146 aggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctccctcttc 199
            | || ||||| || ||||| || || || || |||||||||||||||||||||
Sbjct: 94  cgctacgccaccgcagcgcccaccgcgggggctcagaagatcgtctccctcttc 147
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>gb|BT014450.1| Lycopersicon esculentum clone 133776F, mRNA sequence
          Length = 1196

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 350 gagtacctcaacggcgaggttcccggagactacggctacgatccttttggt 400
           |||||| | ||||| || ||||||||||||||||| |||||||||||||||
Sbjct: 344 gagtacttgaacggagaagttcccggagactacggttacgatccttttggt 394



 Score = 46.1 bits (23), Expect = 0.088
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 269 gacgacgaactcgccaagtggtacggccctgacag 303
           ||||| || ||||||||||||||||| ||||||||
Sbjct: 263 gacgatgagctcgccaagtggtacggacctgacag 297
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>emb|X95727.1|BJMCAB1GE B.juncea mRNA for chlorophyll a/b-binding protein
          Length = 1033

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                            
Query: 270 acgacgaactcgccaagtggtacggccctgacaggaggatctacttgcc 318
           ||||||| |||||||||||||| || ||||||||||| |||| ||||||
Sbjct: 185 acgacgagctcgccaagtggtatggtcctgacaggagaatcttcttgcc 233
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>ref|XM_368803.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00441.4) partial mRNA
          Length = 612

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 243 ccgtggccacctcgagcgccggc 265
           |||||||||||||||||||||||
Sbjct: 331 ccgtggccacctcgagcgccggc 309
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 223     cccgaagccgaagcccgcgccc 244
               ||||||||||||||||||||||
Sbjct: 2412357 cccgaagccgaagcccgcgccc 2412336
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>emb|Y14197.2|RSY14197 Rhodobacter sphaeroides uptake hydrogenase operon
          Length = 11280

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 224  ccgaagccgaagcccgcgcccg 245
            ||||||||||||||||||||||
Sbjct: 4368 ccgaagccgaagcccgcgcccg 4347
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>ref|NM_117102.3| Arabidopsis thaliana LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM
           II 5); chlorophyll binding AT4G10340 (LHCB5) mRNA,
           complete cds
          Length = 1208

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 278 ctcgccaagtggtacggccctgacaggag 306
           |||||||||||||| || |||||||||||
Sbjct: 359 ctcgccaagtggtatggtcctgacaggag 387
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>gb|AF339718.1| Arabidopsis thaliana putative chlorophyll a/b-binding protein
           (At4g10340) mRNA, complete cds
          Length = 893

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 278 ctcgccaagtggtacggccctgacaggag 306
           |||||||||||||| || |||||||||||
Sbjct: 175 ctcgccaagtggtatggtcctgacaggag 203
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>gb|AF326900.1| Arabidopsis thaliana putative chlorophyll a/b-binding protein
           (At4g10340) mRNA, complete cds
          Length = 998

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 278 ctcgccaagtggtacggccctgacaggag 306
           |||||||||||||| || |||||||||||
Sbjct: 227 ctcgccaagtggtatggtcctgacaggag 255
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>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome
          Length = 230138

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 226   gaagccgaagcccgcgcccgt 246
             |||||||||||||||||||||
Sbjct: 29859 gaagccgaagcccgcgcccgt 29839
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>gb|AY070466.1| Arabidopsis thaliana AT4g10340/F24G24_140 mRNA, complete cds
          Length = 1950

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 278 ctcgccaagtggtacggccctgacaggag 306
           |||||||||||||| || |||||||||||
Sbjct: 478 ctcgccaagtggtatggtcctgacaggag 450
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>gb|AF439282.1|AF439282 Retama raetam chl a/b-binding protein mRNA, partial cds
          Length = 318

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 281 gccaagtggtacggccctgacaggaggat 309
           ||||||||||| || ||||||||||||||
Sbjct: 246 gccaagtggtatggtcctgacaggaggat 274
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>gb|AF424597.1|AF424597 Arabidopsis thaliana AT4g10340/F24G24_140 mRNA, complete cds
          Length = 1027

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 278 ctcgccaagtggtacggccctgacaggag 306
           |||||||||||||| || |||||||||||
Sbjct: 227 ctcgccaagtggtatggtcctgacaggag 255
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>gb|AY054126.1| Arabidopsis thaliana AT4g10340/F24G24_140 mRNA, complete cds
          Length = 843

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 278 ctcgccaagtggtacggccctgacaggag 306
           |||||||||||||| || |||||||||||
Sbjct: 175 ctcgccaagtggtatggtcctgacaggag 203
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>gb|AF380631.1|AF380631 Arabidopsis thaliana AT4g10340/F24G24_140 mRNA, complete cds
          Length = 982

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 278 ctcgccaagtggtacggccctgacaggag 306
           |||||||||||||| || |||||||||||
Sbjct: 227 ctcgccaagtggtatggtcctgacaggag 255
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>emb|BX829238.1|CNS0A4DW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZF07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 996

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 278 ctcgccaagtggtacggccctgacaggag 306
           |||||||||||||| || |||||||||||
Sbjct: 208 ctcgccaagtggtatggtcctgacaggag 236
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>emb|BX826540.1|CNS0A4GD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB37ZC03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 989

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 278 ctcgccaagtggtacggccctgacaggag 306
           |||||||||||||| || |||||||||||
Sbjct: 207 ctcgccaagtggtatggtcctgacaggag 235
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>emb|BX826592.1|CNS0A355 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB45ZA02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 972

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 278 ctcgccaagtggtacggccctgacaggag 306
           |||||||||||||| || |||||||||||
Sbjct: 214 ctcgccaagtggtatggtcctgacaggag 242
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>gb|AY087939.1| Arabidopsis thaliana clone 39765 mRNA, complete sequence
          Length = 1036

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 278 ctcgccaagtggtacggccctgacaggag 306
           |||||||||||||| || |||||||||||
Sbjct: 269 ctcgccaagtggtatggtcctgacaggag 297
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>gb|AF134129.1| Arabidopsis thaliana Lhcb5 protein (Lhcb5) mRNA, complete cds
          Length = 1029

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 278 ctcgccaagtggtacggccctgacaggag 306
           |||||||||||||| || |||||||||||
Sbjct: 222 ctcgccaagtggtatggtcctgacaggag 250
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>gb|AY111693.1| Zea mays CL6746_1 mRNA sequence
          Length = 1026

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 217 gcctgccccgaagccgaagcc 237
           |||||||||||||||||||||
Sbjct: 465 gcctgccccgaagccgaagcc 485
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    cggctcctccaggtatgcca 155
              ||||||||||||||||||||
Sbjct: 333603 cggctcctccaggtatgcca 333622
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>gb|AY509120.1| Streptomyces bikiniensis strain NRRL 2737 chalcomycin biosynthetic gene
             cluster, partial sequence
          Length = 85915

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   gaagccgaagcccgcgcccg 245
             ||||||||||||||||||||
Sbjct: 68883 gaagccgaagcccgcgcccg 68902
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>ref|XM_527798.1| PREDICTED: Pan troglodytes similar to hypothetical protein
           (LOC472424), mRNA
          Length = 1614

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 23  gctgagctgagcacgcccctctgc 46
           ||||||||||||||| ||||||||
Sbjct: 450 gctgagctgagcacgaccctctgc 427
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>gb|AC163335.6| Mus musculus chromosome 7, clone RP24-149G13, complete sequence
          Length = 164660

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      cccatcacatcctcccttcc 21
              ||||||||||||||||||||
Sbjct: 150209 cccatcacatcctcccttcc 150190
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 237     ccgcgcccgtggccacctcg 256
               ||||||||||||||||||||
Sbjct: 1783493 ccgcgcccgtggccacctcg 1783474
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>gb|AC004921.2| Homo sapiens PAC clone RP5-899E9 from 7, complete sequence
          Length = 150332

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    gctgagctgagcacgcccctctgc 46
             ||||||||||||||| ||||||||
Sbjct: 62037 gctgagctgagcacgaccctctgc 62060
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>gb|AC142324.1| Pan troglodytes BAC clone RP43-73K6 from 7, complete sequence
          Length = 178050

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    gctgagctgagcacgcccctctgc 46
             ||||||||||||||| ||||||||
Sbjct: 33553 gctgagctgagcacgaccctctgc 33576
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 224     ccgaagccgaagcccgcgcc 243
               ||||||||||||||||||||
Sbjct: 2226819 ccgaagccgaagcccgcgcc 2226800
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>emb|AL096774.9|HSDJ144C9 Human DNA sequence from clone RP1-144C9 on chromosome 1p34.3-36.11
             Contains the gene for a novel protein, a ribosomal protein
             S24 (RPS24) pseudogene, the GPR3 gene for G
             protein-coupled receptor 3 and the 3' end of the WASF2
             gene for WAS protein family, member 2, complete sequence
          Length = 77322

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    ctgctgcacgccccttctcc 62
             ||||||||||||||||||||
Sbjct: 27561 ctgctgcacgccccttctcc 27542
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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    catcgacgacgaactcgcca 284
              ||||||||||||||||||||
Sbjct: 713736 catcgacgacgaactcgcca 713717
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>gb|AE011785.1| Xanthomonas axonopodis pv. citri str. 306,  section 163 of 469 of the
            complete genome
          Length = 11903

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 237  ccgcgcccgtggccacctcg 256
            ||||||||||||||||||||
Sbjct: 8873 ccgcgcccgtggccacctcg 8854
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>gb|AC025946.9| Homo sapiens chromosome 10 clone RP11-543F8, complete sequence
          Length = 197191

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 53    ccccttctccctcccaaccttggg 76
             |||||||||| |||||||||||||
Sbjct: 70853 ccccttctccttcccaaccttggg 70830
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>dbj|AK047546.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:B930086K23 product:inferred:
           ORF2 consensus sequence encoding endonuclease and
           reverse transcriptase minus RNaseH {Rattus norvegi, full
           insert sequence
          Length = 3901

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 2   cccatcacatcctcccttcc 21
           ||||||||||||||||||||
Sbjct: 557 cccatcacatcctcccttcc 576
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>gb|AC113306.6| Mus musculus chromosome 7, clone RP23-434A16, complete sequence
          Length = 200177

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      cccatcacatcctcccttcc 21
              ||||||||||||||||||||
Sbjct: 178280 cccatcacatcctcccttcc 178299
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>gb|AC154749.2| Mus musculus BAC clone RP24-399C21 from 17, complete sequence
          Length = 155483

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     ctcccttcctgctgagctga 32
              ||||||||||||||||||||
Sbjct: 137483 ctcccttcctgctgagctga 137502
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 237     ccgcgcccgtggccacctcg 256
               ||||||||||||||||||||
Sbjct: 1736444 ccgcgcccgtggccacctcg 1736425


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,545,326
Number of Sequences: 3902068
Number of extensions: 2545326
Number of successful extensions: 55120
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54610
Number of HSP's gapped (non-prelim): 508
length of query: 406
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 384
effective length of database: 17,147,199,772
effective search space: 6584524712448
effective search space used: 6584524712448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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