ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet69g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450745.1| Oryza sativa (japonica cultivar-group), mRNA 74 4e-10
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
3dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
4dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
5ref|XM_482397.1| Oryza sativa (japonica cultivar-group), mRNA 58 3e-05
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
7dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
8gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 44 0.38
9gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 44 0.38
10emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.38
11gb|AY112036.1| Zea mays CL5235_1 mRNA sequence 44 0.38
12ref|XM_425926.1| PREDICTED: Gallus gallus similar to Hairy/enhan... 42 1.5
13gb|AY597047.1| Oncorhynchus mykiss growth hormone inducible-like... 42 1.5
14emb|CR956408.5| Pig DNA sequence from clone CH242-34K8 on chromo... 42 1.5
15emb|AJ344068.1|PPU344068 Pseudomonas putida plasmid pWW0 complet... 42 1.5
16dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
17dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.5
18dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
19dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
20gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 6.0
21ref|XM_463579.1| Oryza sativa (japonica cultivar-group), predic... 40 6.0
22gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
23gb|AC104705.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
24gb|AC130599.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
25gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 6.0
26emb|CR293504.11| Zebrafish DNA sequence from clone CH211-147G3 i... 40 6.0
27gb|AC164579.5| Mus musculus 6 BAC RP23-384P24 (Roswell Park Canc... 40 6.0
28dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
29gb|AC158662.7| Mus musculus 6 BAC RP23-20K24 (Roswell Park Cance... 40 6.0
30ref|XM_694190.1| PREDICTED: Danio rerio similar to skeletal musc... 40 6.0
31ref|XM_623906.1| PREDICTED: Apis mellifera similar to ENSANGP000... 40 6.0
32dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
33dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
34dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
35dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
36gb|AE004446.1| Pseudomonas aeruginosa PAO1, section 7 of 529 of ... 40 6.0
37gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.0
38dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
39gb|AF193835.1|AF193835 Oryza sativa LRK1 protein (LRK1) mRNA, co... 40 6.0
40dbj|AP003810.6| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
41dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
42dbj|AP005745.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
43dbj|AP004338.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
44dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
45emb|BX005447.8| Zebrafish DNA sequence from clone DKEY-29B14, co... 40 6.0
46emb|BX088551.7| Zebrafish DNA sequence from clone CH211-106A19 i... 40 6.0
47dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
48dbj|AP005804.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
49dbj|AK068952.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
50dbj|AP005486.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
51emb|CR759796.17| Zebrafish DNA sequence from clone DKEY-18A10 in... 40 6.0
52gb|AF103230.1|AF103230 Homo sapiens clone N27 immunoglobulin hea... 40 6.0
53emb|CR626961.6| Zebrafish DNA sequence from clone CH211-160F13 i... 40 6.0 
>ref|XM_450745.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 207

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                            
Query: 180 cggcggcggtggggcggaaggtgcgggagctgcgccggctggtgcccgg 228
           |||||||||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 17  cggcggcggtggcgcggagggtgcgggagctgcggcggctggtgcccgg 65



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                              
Query: 269 gccgactacatcgcgcagctccgggccagggtggagctcctcagggcgctc 319
           |||| |||| ||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 106 gccggctacgtcgcggagctccgcgccagggtggagctcctcagggcgctc 156
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                                 
Query: 180      cggcggcggtggggcggaaggtgcgggagctgcgccggctggtgcccgg 228
                |||||||||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 12553615 cggcggcggtggcgcggagggtgcgggagctgcggcggctggtgcccgg 12553567



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                   
Query: 269      gccgactacatcgcgcagctccgggccagggtggagctcctcagggcgctc 319
                |||| |||| ||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 12553526 gccggctacgtcgcggagctccgcgccagggtggagctcctcagggcgctc 12553476



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 27      gcgccacgccacgccgcgcc 46
               ||||||||||||||||||||
Sbjct: 2905864 gcgccacgccacgccgcgcc 2905883
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>dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0041C07
          Length = 179047

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                              
Query: 180   cggcggcggtggggcggaaggtgcgggagctgcgccggctggtgcccgg 228
             |||||||||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 19553 cggcggcggtggcgcggagggtgcgggagctgcggcggctggtgcccgg 19505



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                
Query: 269   gccgactacatcgcgcagctccgggccagggtggagctcctcagggcgctc 319
             |||| |||| ||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 19464 gccggctacgtcgcggagctccgcgccagggtggagctcctcagggcgctc 19414
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>dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0711A01
          Length = 162400

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                              
Query: 180   cggcggcggtggggcggaaggtgcgggagctgcgccggctggtgcccgg 228
             |||||||||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 68942 cggcggcggtggcgcggagggtgcgggagctgcggcggctggtgcccgg 68894



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                
Query: 269   gccgactacatcgcgcagctccgggccagggtggagctcctcagggcgctc 319
             |||| |||| ||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 68853 gccggctacgtcgcggagctccgcgccagggtggagctcctcagggcgctc 68803
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>ref|XM_482397.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 255

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 192 ggcggaaggtgcgggagctgcgccggctggtgcccgg 228
           ||||||||||||||||||| || ||||||||||||||
Sbjct: 86  ggcggaaggtgcgggagctccggcggctggtgcccgg 122



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 269 gccgactacatcgcgcagctccgggccagggtggagctcctcagggcgctctc 321
           |||||||||||||  | ||||  ||| ||||| ||||||||||||||||||||
Sbjct: 163 gccgactacatcgtccggctcaaggcgagggtcgagctcctcagggcgctctc 215
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 192      ggcggaaggtgcgggagctgcgccggctggtgcccgg 228
                ||||||||||||||||||| || ||||||||||||||
Sbjct: 19807490 ggcggaaggtgcgggagctccggcggctggtgcccgg 19807454



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                     
Query: 269      gccgactacatcgcgcagctccgggccagggtggagctcctcagggcgctctc 321
                |||||||||||||  | ||||  ||| ||||| ||||||||||||||||||||
Sbjct: 19807413 gccgactacatcgtccggctcaaggcgagggtcgagctcctcagggcgctctc 19807361
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>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0007M04
          Length = 176293

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                   
Query: 192    ggcggaaggtgcgggagctgcgccggctggtgcccgg 228
              ||||||||||||||||||| || ||||||||||||||
Sbjct: 136441 ggcggaaggtgcgggagctccggcggctggtgcccgg 136405



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                   
Query: 269    gccgactacatcgcgcagctccgggccagggtggagctcctcagggcgctctc 321
              |||||||||||||  | ||||  ||| ||||| ||||||||||||||||||||
Sbjct: 136364 gccgactacatcgtccggctcaaggcgagggtcgagctcctcagggcgctctc 136312
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 166     ccgtcgccgccggtcggcggcggtgg 191
               ||||||||| ||||||||||||||||
Sbjct: 1210519 ccgtcgccgacggtcggcggcggtgg 1210544
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 166     ccgtcgccgccggtcggcggcggtgg 191
               ||||||||| ||||||||||||||||
Sbjct: 2305548 ccgtcgccgacggtcggcggcggtgg 2305523
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 166     ccgtcgccgccggtcggcggcggtgg 191
               ||||||||| ||||||||||||||||
Sbjct: 2079543 ccgtcgccgacggtcggcggcggtgg 2079568
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>gb|AY112036.1| Zea mays CL5235_1 mRNA sequence
          Length = 427

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 266 acggccgactacatcgcgcagctccgggccagggtggagctcctcagggc 315
           |||||||||||||||| |  ||| ||||| |||||||| || ||||||||
Sbjct: 373 acggccgactacatcgtggggctgcgggctagggtggatcttctcagggc 324
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>ref|XM_425926.1| PREDICTED: Gallus gallus similar to Hairy/enhancer-of-split related
           with YRPW motif 1 (Hairy and enhancer of split
           related-1) (HESR-1) (Cardiovascular helix-loop-helix
           factor 2) (HES-related repressor protein 2 HERP2)
           (LOC428365), mRNA
          Length = 1167

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 206 gagctgcgccggctggtgccc 226
           |||||||||||||||||||||
Sbjct: 343 gagctgcgccggctggtgccc 363
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>gb|AY597047.1| Oncorhynchus mykiss growth hormone inducible-like protein mRNA,
           complete cds
          Length = 1264

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 295 cagggtggagctcctcagggc 315
           |||||||||||||||||||||
Sbjct: 130 cagggtggagctcctcagggc 110
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>emb|CR956408.5| Pig DNA sequence from clone CH242-34K8 on chromosome 17, complete
             sequence
          Length = 30411

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 131   gagatcgcgaggaggaggagg 151
             |||||||||||||||||||||
Sbjct: 27227 gagatcgcgaggaggaggagg 27247
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>emb|AJ344068.1|PPU344068 Pseudomonas putida plasmid pWW0 complete genome
          Length = 116580

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 25    cagcgccacgccacgccgcgc 45
             |||||||||||||||||||||
Sbjct: 59397 cagcgccacgccacgccgcgc 59377
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 139     gaggaggaggaggtcgctgtg 159
               |||||||||||||||||||||
Sbjct: 6675187 gaggaggaggaggtcgctgtg 6675207
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 171     gccgccggtcggcggcggtgg 191
               |||||||||||||||||||||
Sbjct: 4243067 gccgccggtcggcggcggtgg 4243047
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>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0425F05
          Length = 162858

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 139    gaggaggaggaggtcgctgtg 159
              |||||||||||||||||||||
Sbjct: 109313 gaggaggaggaggtcgctgtg 109333
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>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0525F01
          Length = 151668

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 139  gaggaggaggaggtcgctgtg 159
            |||||||||||||||||||||
Sbjct: 4866 gaggaggaggaggtcgctgtg 4886
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 209     ctgcgccggctggtgcccgg 228
               ||||||||||||||||||||
Sbjct: 2023252 ctgcgccggctggtgcccgg 2023271
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>ref|XM_463579.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3852

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 tcggcggcggtggggcggaa 198
           ||||||||||||||||||||
Sbjct: 101 tcggcggcggtggggcggaa 82
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>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06,
              complete sequence
          Length = 139139

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 202    gcgggagctgcgccggctgg 221
              ||||||||||||||||||||
Sbjct: 130571 gcgggagctgcgccggctgg 130552
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>gb|AC104705.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1008_D08,
             complete sequence
          Length = 94286

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    gcgccacgccacgccgcgcc 46
             ||||||||||||||||||||
Sbjct: 50808 gcgccacgccacgccgcgcc 50789
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>gb|AC130599.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0016G07,
              complete sequence
          Length = 123167

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     gcgccacgccacgccgcgcc 46
              ||||||||||||||||||||
Sbjct: 117709 gcgccacgccacgccgcgcc 117690
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    cgagccgtcgccgccggtcg 181
              ||||||||||||||||||||
Sbjct: 613885 cgagccgtcgccgccggtcg 613866
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>emb|CR293504.11| Zebrafish DNA sequence from clone CH211-147G3 in linkage group 10,
             complete sequence
          Length = 165086

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 128   atggagatcgcgaggaggaggagg 151
             |||||||||| |||||||||||||
Sbjct: 28892 atggagatcgagaggaggaggagg 28915
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>gb|AC164579.5| Mus musculus 6 BAC RP23-384P24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 214578

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 343    ccatggcgactcccctagct 362
              ||||||||||||||||||||
Sbjct: 115401 ccatggcgactcccctagct 115420
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>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0497A05
          Length = 130919

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   tcggcggcggtggggcggaa 198
             ||||||||||||||||||||
Sbjct: 41095 tcggcggcggtggggcggaa 41076
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>gb|AC158662.7| Mus musculus 6 BAC RP23-20K24 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 250218

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   ccatggcgactcccctagct 362
             ||||||||||||||||||||
Sbjct: 44056 ccatggcgactcccctagct 44075
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>ref|XM_694190.1| PREDICTED: Danio rerio similar to skeletal muscle L-type calcium
            channel alpha1S subunit (LOC570683), partial mRNA
          Length = 1473

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  ggatccgttcagcatggaga 134
            ||||||||||||||||||||
Sbjct: 1224 ggatccgttcagcatggaga 1243
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>ref|XM_623906.1| PREDICTED: Apis mellifera similar to ENSANGP00000025466
           (LOC551512), mRNA
          Length = 1424

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 422 ggtatatattgaacaattat 441
           ||||||||||||||||||||
Sbjct: 240 ggtatatattgaacaattat 221
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 27      gcgccacgccacgccgcgcc 46
               ||||||||||||||||||||
Sbjct: 1848183 gcgccacgccacgccgcgcc 1848164



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    cggcggcggtggggcggaag 199
              ||||||||||||||||||||
Sbjct: 903050 cggcggcggtggggcggaag 903031
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 202      gcgggagctgcgccggctgg 221
                ||||||||||||||||||||
Sbjct: 27766013 gcgggagctgcgccggctgg 27765994



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 27      gcgccacgccacgccgcgcc 46
               ||||||||||||||||||||
Sbjct: 6746547 gcgccacgccacgccgcgcc 6746528
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 27      gcgccacgccacgccgcgcc 46
               ||||||||||||||||||||
Sbjct: 3679914 gcgccacgccacgccgcgcc 3679895
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 179      tcggcggcggtggggcggaa 198
                ||||||||||||||||||||
Sbjct: 39486653 tcggcggcggtggggcggaa 39486634



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 27       gcgccacgccacgccgcgcc 46
                ||||||||||||||||||||
Sbjct: 22613770 gcgccacgccacgccgcgcc 22613789
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>gb|AE004446.1| Pseudomonas aeruginosa PAO1, section 7 of 529 of the complete genome
          Length = 19762

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 164  agccgtcgccgccggtcggcggcg 187
            |||| |||||||||||||||||||
Sbjct: 5852 agccatcgccgccggtcggcggcg 5829
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 195     ggaaggtgcgggagctgcgccggctggt 222
               ||||| |||| |||||||||||||||||
Sbjct: 3869297 ggaagctgcgcgagctgcgccggctggt 3869270
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>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1417F08
          Length = 155536

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   tcggcggcggtggggcggaa 198
             ||||||||||||||||||||
Sbjct: 61667 tcggcggcggtggggcggaa 61648
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>gb|AF193835.1|AF193835 Oryza sativa LRK1 protein (LRK1) mRNA, complete cds
          Length = 3514

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 27 gcgccacgccacgccgcgcc 46
          ||||||||||||||||||||
Sbjct: 69 gcgccacgccacgccgcgcc 88
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>dbj|AP003810.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1119_A04
          Length = 128906

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 180  cggcggcggtggggcggaag 199
            ||||||||||||||||||||
Sbjct: 7397 cggcggcggtggggcggaag 7378
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>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1097D05
          Length = 144879

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     gcgccacgccacgccgcgcc 46
              ||||||||||||||||||||
Sbjct: 129507 gcgccacgccacgccgcgcc 129526
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>dbj|AP005745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0017O03
          Length = 180651

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    gcgccacgccacgccgcgcc 46
             ||||||||||||||||||||
Sbjct: 96856 gcgccacgccacgccgcgcc 96875
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>dbj|AP004338.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0507H12
          Length = 143030

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    gcgccacgccacgccgcgcc 46
             ||||||||||||||||||||
Sbjct: 52762 gcgccacgccacgccgcgcc 52743
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>dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1118_D07
          Length = 131449

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     gcgccacgccacgccgcgcc 46
              ||||||||||||||||||||
Sbjct: 100402 gcgccacgccacgccgcgcc 100383
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>emb|BX005447.8| Zebrafish DNA sequence from clone DKEY-29B14, complete sequence
          Length = 283185

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    gcgaggaggaggaggtcgct 156
              ||||||||||||||||||||
Sbjct: 159714 gcgaggaggaggaggtcgct 159695
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>emb|BX088551.7| Zebrafish DNA sequence from clone CH211-106A19 in linkage group 5,
             complete sequence
          Length = 184417

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   gcgaggaggaggaggtcgct 156
             ||||||||||||||||||||
Sbjct: 90425 gcgaggaggaggaggtcgct 90444
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>dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0669G09
          Length = 140067

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    gcgccacgccacgccgcgcc 46
             ||||||||||||||||||||
Sbjct: 20231 gcgccacgccacgccgcgcc 20212
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>dbj|AP005804.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0085K21
          Length = 180714

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     gcgccacgccacgccgcgcc 46
              ||||||||||||||||||||
Sbjct: 161204 gcgccacgccacgccgcgcc 161185
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>dbj|AK068952.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001N18, full
           insert sequence
          Length = 4145

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 tcggcggcggtggggcggaa 198
           ||||||||||||||||||||
Sbjct: 223 tcggcggcggtggggcggaa 204
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>dbj|AP005486.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1138_B05
          Length = 113982

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    cggcggcggtggggcggaag 199
              ||||||||||||||||||||
Sbjct: 101806 cggcggcggtggggcggaag 101787
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>emb|CR759796.17| Zebrafish DNA sequence from clone DKEY-18A10 in linkage group 10,
             complete sequence
          Length = 130961

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 128   atggagatcgcgaggaggaggagg 151
             |||||||||| |||||||||||||
Sbjct: 70706 atggagatcgagaggaggaggagg 70683
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>gb|AF103230.1|AF103230 Homo sapiens clone N27 immunoglobulin heavy chain variable region
           mRNA, partial cds
          Length = 350

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 390 tatacgtggatatctcgcac 409
           ||||||||||||||||||||
Sbjct: 284 tatacgtggatatctcgcac 265
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>emb|CR626961.6| Zebrafish DNA sequence from clone CH211-160F13 in linkage group 10,
             complete sequence
          Length = 167229

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 128   atggagatcgcgaggaggaggagg 151
             |||||||||| |||||||||||||
Sbjct: 62889 atggagatcgagaggaggaggagg 62866


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,507,073
Number of Sequences: 3902068
Number of extensions: 3507073
Number of successful extensions: 84433
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82866
Number of HSP's gapped (non-prelim): 1546
length of query: 443
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 421
effective length of database: 17,147,199,772
effective search space: 7218971104012
effective search space used: 7218971104012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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