>emb|AL157938.22| Human DNA sequence from clone RP11-544A12 on chromosome 9q34.13-34.3
             Contains the 3' end of the LAMC3 gene for laminin gamma 3,
             the gene for ionized calcium binding adaptor (IBA2), the
             NUP214 gene for nucleoporin 214kDa, a novel gene, a
             ribosomal protein L13a (RPL13A) pseudogene, the gene for a
             novel protein (FLJ00024) and four CpG islands, complete
             sequence
          Length = 197019

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     aaaaccacaaaaccataca 19
             |||||||||||||||||||
Sbjct: 58753 aaaaccacaaaaccataca 58735

>emb|X14475.1|DMSCRHOM D.melanogaster Scr (Sex combs reduced) homeotic gene
          Length = 4243

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1    aaaaccacaaaaccataca 19
            |||||||||||||||||||
Sbjct: 4155 aaaaccacaaaaccataca 4173

>ref|NM_206443.1| Drosophila melanogaster Sex combs reduced CG1030-RB, transcript
            variant B (Scr), mRNA
          Length = 4038

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1    aaaaccacaaaaccataca 19
            |||||||||||||||||||
Sbjct: 3950 aaaaccacaaaaccataca 3968

>ref|NM_206442.1| Drosophila melanogaster Sex combs reduced CG1030-RC, transcript
            variant C (Scr), mRNA
          Length = 4170

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1    aaaaccacaaaaccataca 19
            |||||||||||||||||||
Sbjct: 4082 aaaaccacaaaaccataca 4100

>ref|NM_079524.3| Drosophila melanogaster Sex combs reduced CG1030-RA, transcript
            variant A (Scr), mRNA
          Length = 4210

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1    aaaaccacaaaaccataca 19
            |||||||||||||||||||
Sbjct: 4122 aaaaccacaaaaccataca 4140

>gb|AC095014.1| Drosophila melanogaster, chromosome 3R, region 83F-84A, BAC clone
              BACR19D23, complete sequence
          Length = 170801

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      aaaaccacaaaaccataca 19
              |||||||||||||||||||
Sbjct: 157153 aaaaccacaaaaccataca 157135

>gb|AE001572.2| Drosophila melanogaster Antennapedia complex (ANT-C),complete sequence
          Length = 429825

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      aaaaccacaaaaccataca 19
              |||||||||||||||||||
Sbjct: 233621 aaaaccacaaaaccataca 233639

>gb|AC084442.1|AC084442 Caenorhabditis briggsae cosmid CB006H06, complete sequence
          Length = 88882

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     aaaaccacaaaaccataca 19
             |||||||||||||||||||
Sbjct: 76738 aaaaccacaaaaccataca 76756

>gb|AC122683.4| Homo sapiens 3 RP11-528N21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 142771

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    agcctcaaaaactgcttgg 44
             |||||||||||||||||||
Sbjct: 44630 agcctcaaaaactgcttgg 44612

>gb|AE003673.3| Drosophila melanogaster chromosome 3R, section 11 of 118 of the
             complete sequence
          Length = 308146

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     aaaaccacaaaaccataca 19
             |||||||||||||||||||
Sbjct: 45030 aaaaccacaaaaccataca 45012

>emb|X77076.1|DMSCR2 D.melanogaster SCR gene exon2
          Length = 2622

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1    aaaaccacaaaaccataca 19
            |||||||||||||||||||
Sbjct: 2515 aaaaccacaaaaccataca 2533

>dbj|D31777.1|TFLGTFTBPA Trimeresurus flavoviridis gTfTBP gene for TATA-box binding protein,
            complete cds
          Length = 17279

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1    aaaaccacaaaaccataca 19
            |||||||||||||||||||
Sbjct: 3584 aaaaccacaaaaccataca 3602

>gb|AC002512.1|AC002512 Drosophila melanogaster (P1 DS00276 (D13)) DNA sequence, complete
             sequence
          Length = 84246

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     aaaaccacaaaaccataca 19
             |||||||||||||||||||
Sbjct: 78820 aaaaccacaaaaccataca 78802

>gb|AC154042.1| Drosophila melanogaster clone BACR46E23, complete sequence
          Length = 181148

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 1      aaaaccacaaaaccatac 18
              ||||||||||||||||||
Sbjct: 119357 aaaaccacaaaaccatac 119374

>gb|AY439178.1|AY439178S1 Drosophila virilis troponin T (TpnT) gene, exons 2 through 4
          Length = 4904

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    cacaaaaccatacacatc 23
            ||||||||||||||||||
Sbjct: 3490 cacaaaaccatacacatc 3507

>gb|AC110169.7| Mus musculus chromosome 9, clone RP23-233D3, complete sequence
          Length = 193041

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 7      acaaaaccatacacatct 24
              ||||||||||||||||||
Sbjct: 119573 acaaaaccatacacatct 119590

>emb|AL360002.5| Human DNA sequence from clone RP11-192B4 on chromosome 1, complete
             sequence
          Length = 61404

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     aaaaccacaaaaccatac 18
             ||||||||||||||||||
Sbjct: 36942 aaaaccacaaaaccatac 36959

>emb|AL136145.23| Human DNA sequence from clone RP11-37K18 on chromosome 13 Contains a
             tripartite motif-containing 39 (TRIM39, TFP) pseudogene,
             complete sequence
          Length = 83809

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 23    ctaagcctcaaaaactgcttgg 44
             |||||||| |||||||||||||
Sbjct: 37449 ctaagcctgaaaaactgcttgg 37470

>emb|CR352338.7| Zebrafish DNA sequence from clone CH211-196L11 in linkage group 11,
             complete sequence
          Length = 209840

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 9     aaaaccatacacatctaa 26
             ||||||||||||||||||
Sbjct: 54840 aaaaccatacacatctaa 54857

>gb|AC117411.3| Homo sapiens 3 BAC RP11-55O2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 124524

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 23    ctaagcctcaaaaactgcttgg 44
             |||||||| |||||||||||||
Sbjct: 43678 ctaagcctgaaaaactgcttgg 43657

>gb|AC063933.13| Homo sapiens 3 BAC RP11-566A3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168380

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    aaaccatacacatctaag 27
             ||||||||||||||||||
Sbjct: 61965 aaaccatacacatctaag 61948

>dbj|AK156287.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830014O07 product:unclassifiable, full
            insert sequence
          Length = 5145

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 7    acaaaaccatacacatct 24
            ||||||||||||||||||
Sbjct: 3197 acaaaaccatacacatct 3214

>gb|AC022150.6| Homo sapiens chromosome 19 clone CTD-3099C6, complete sequence
          Length = 228156

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 23     ctaagcctcaaaaactgcttgg 44
              |||||||| |||||||||||||
Sbjct: 141784 ctaagcctgaaaaactgcttgg 141763

>gb|AC005104.1| Homo sapiens BAC clone CTA-442F18 from 2, complete sequence
          Length = 134911

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 1     aaaaccacaaaaccatacacat 22
             ||||||||||||||||| ||||
Sbjct: 13444 aaaaccacaaaaccataaacat 13465

>emb|AL954390.19| Mouse DNA sequence from clone RP23-13H18 on chromosome 4, complete
             sequence
          Length = 185237

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 23    ctaagcctcaaaaactgc 40
             ||||||||||||||||||
Sbjct: 79645 ctaagcctcaaaaactgc 79628

>gb|AE003487.2| Drosophila melanogaster chromosome X, section 39 of 74 of the complete
              sequence
          Length = 308317

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 1      aaaaccacaaaaccatac 18
              ||||||||||||||||||
Sbjct: 119060 aaaaccacaaaaccatac 119077

>gb|AC124514.4| Mus musculus BAC clone RP23-450H18 from 16, complete sequence
          Length = 182032

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 30    tcaaaaactgcttgggag 47
             ||||||||||||||||||
Sbjct: 93835 tcaaaaactgcttgggag 93818

>gb|AC173346.1| Mus musculus BAC clone RP23-42N8 from chromosome 9, complete sequence
          Length = 219266

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 7     acaaaaccatacacatct 24
             ||||||||||||||||||
Sbjct: 14274 acaaaaccatacacatct 14257


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 517,152
Number of Sequences: 3902068
Number of extensions: 517152
Number of successful extensions: 150583
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 150517
Number of HSP's gapped (non-prelim): 66
length of query: 48
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 28
effective length of database: 17,155,003,908
effective search space: 480340109424
effective search space used: 480340109424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)