ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet69d08 |
|---|---|
| Clone Library Name | barley_pub |
>CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chloroplast| precursor (LHCII protein 4.2) (LHCB4.2) Length = 287 Score = 89.4 bits (220), Expect = 2e-18 Identities = 43/75 (57%), Positives = 53/75 (70%), Gaps = 1/75 (1%) Frame = +2 Query: 98 TFLGTRL-ADPAPQNGRIVARFGFGXXXXXXXXXXXXXTTDRPLWFPGAQAPEYLDGTLV 274 + +GTR+ +D + + R ARFGFG + DRPLWFPGA++PEYLDG+LV Sbjct: 12 SIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVIS-DRPLWFPGAKSPEYLDGSLV 70 Query: 275 GDYGFDPFGLGKPAE 319 GDYGFDPFGLGKPAE Sbjct: 71 GDYGFDPFGLGKPAE 85
>CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast| precursor (LHCII protein 4.1) (LHCB4.1) Length = 290 Score = 87.0 bits (214), Expect = 1e-17 Identities = 43/76 (56%), Positives = 52/76 (68%), Gaps = 2/76 (2%) Frame = +2 Query: 98 TFLGTRLADPA-PQNGRIVARFGFGXXXXX-XXXXXXXXTTDRPLWFPGAQAPEYLDGTL 271 + +GTR+A P +GR A FGFG TTDRPLW+PGA +P++LDG+L Sbjct: 13 SIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSL 72 Query: 272 VGDYGFDPFGLGKPAE 319 VGDYGFDPFGLGKPAE Sbjct: 73 VGDYGFDPFGLGKPAE 88
>CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein CP29.3, chloroplast| precursor (LHCII protein 4.3) (LHCB4.3) Length = 276 Score = 78.6 bits (192), Expect = 4e-15 Identities = 38/76 (50%), Positives = 45/76 (59%), Gaps = 5/76 (6%) Frame = +2 Query: 107 GTRLADPAPQNGRIVARFGFGXXXXXXX-----XXXXXXTTDRPLWFPGAQAPEYLDGTL 271 G R+ DP P GR+ ARFGF DR +WFPGA PE+LDG++ Sbjct: 14 GIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSM 73 Query: 272 VGDYGFDPFGLGKPAE 319 +GD GFDPFGLGKPAE Sbjct: 74 IGDRGFDPFGLGKPAE 89
>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor| (LHCI type II CAB) Length = 270 Score = 59.7 bits (143), Expect = 2e-09 Identities = 24/35 (68%), Positives = 28/35 (80%) Frame = +2 Query: 215 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKPAE 319 DRPLWFPG+ PE+LDG+L GD+GFDP GLG E Sbjct: 64 DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPE 98
>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCI type II CAB-7) Length = 270 Score = 55.1 bits (131), Expect = 4e-08 Identities = 22/35 (62%), Positives = 26/35 (74%) Frame = +2 Query: 215 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKPAE 319 DRPLWFPG+ P +LDG+L GD+GFDP GL E Sbjct: 64 DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPE 98
>CB29_CHLRE (Q93WD2) Chlorophyll a-b binding protein CP29| Length = 279 Score = 49.3 bits (116), Expect = 2e-06 Identities = 20/32 (62%), Positives = 23/32 (71%) Frame = +2 Query: 224 LWFPGAQAPEYLDGTLVGDYGFDPFGLGKPAE 319 LW P PE+LDG+L GD GFDP GL KP+E Sbjct: 51 LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSE 82
>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCI type III CAB-8) Length = 273 Score = 45.8 bits (107), Expect = 3e-05 Identities = 19/33 (57%), Positives = 22/33 (66%) Frame = +2 Query: 215 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKP 313 +R LWF Q+ YLDG L GD+GFDP GL P Sbjct: 52 NRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDP 84
>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast| precursor (Light-harvesting complex II protein 5) (LHCB5) (LHCIIc) Length = 280 Score = 45.1 bits (105), Expect = 5e-05 Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 5/40 (12%) Frame = +2 Query: 215 DRPLWFPG-----AQAPEYLDGTLVGDYGFDPFGLGKPAE 319 DR ++ P ++ PEYL+G + GDYG+DPFGLGK E Sbjct: 66 DRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPE 105
>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCI type III CAB-4) (LHCP) Length = 251 Score = 44.3 bits (103), Expect = 8e-05 Identities = 20/61 (32%), Positives = 27/61 (44%) Frame = +2 Query: 137 NGRIVARFGFGXXXXXXXXXXXXXTTDRPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKPA 316 +GR+ F + W PG +P+YL G+L GD GFDP GL + Sbjct: 27 SGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDP 86 Query: 317 E 319 E Sbjct: 87 E 87
>CB4A_LYCES (P27524) Chlorophyll a-b binding protein CP24 10A, chloroplast| precursor (CAB-10A) (LHCP) Length = 256 Score = 43.1 bits (100), Expect = 2e-04 Identities = 19/34 (55%), Positives = 22/34 (64%), Gaps = 6/34 (17%) Frame = +2 Query: 227 WFPGAQA------PEYLDGTLVGDYGFDPFGLGK 310 W P + PE+LDG+L GDYGFDP GLGK Sbjct: 55 WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGK 88
>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor| (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa protein) Length = 246 Score = 42.4 bits (98), Expect = 3e-04 Identities = 16/28 (57%), Positives = 19/28 (67%) Frame = +2 Query: 227 WFPGAQAPEYLDGTLVGDYGFDPFGLGK 310 W PG P YLDG+ GD+GFD GLG+ Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDSLGLGE 76
>LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins precursor| [Contains: LH38 protein 1; LH38 protein 2; LH38 protein 3] (Fragment) Length = 530 Score = 42.0 bits (97), Expect = 4e-04 Identities = 17/28 (60%), Positives = 19/28 (67%) Frame = +2 Query: 221 PLWFPGAQAPEYLDGTLVGDYGFDPFGL 304 PLWFP AP +L+G GD GFDP GL Sbjct: 3 PLWFPNTLAPSWLNGEYYGDRGFDPAGL 30 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/30 (56%), Positives = 18/30 (60%) Frame = +2 Query: 215 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGL 304 +R LWFP P YL G GD GFDP GL Sbjct: 370 ERELWFPNIVPPRYLTGEAYGDKGFDPAGL 399 Score = 33.9 bits (76), Expect = 0.11 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = +2 Query: 224 LWFPGAQAPEYLDGTLVGDYGFDPFGL 304 LWFP A+ P L G D GFDP L Sbjct: 189 LWFPNAEPPALLTGEYPADRGFDPLNL 215
>CB4B_LYCES (P27525) Chlorophyll a-b binding protein CP24 10B, chloroplast| precursor (CAB-10B) (LHCP) Length = 256 Score = 42.0 bits (97), Expect = 4e-04 Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 6/34 (17%) Frame = +2 Query: 227 WFPGAQA------PEYLDGTLVGDYGFDPFGLGK 310 W P ++ PE+LDG+L GD+GFDP GLGK Sbjct: 55 WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGK 88
>CB4_SPIOL (P36494) Chlorophyll a-b binding protein CP24, chloroplast| precursor Length = 261 Score = 41.6 bits (96), Expect = 5e-04 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 6/34 (17%) Frame = +2 Query: 227 WFPGAQA------PEYLDGTLVGDYGFDPFGLGK 310 W P + PE+LDG+L GD+GFDP GLGK Sbjct: 60 WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGK 93
>LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins precursor| [Contains: LH35 protein 1; LH35 protein 2] (Fragment) Length = 331 Score = 36.2 bits (82), Expect = 0.021 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +2 Query: 224 LWFPGAQAPEYLDGTLVGDYGFDPFGL 304 +WFPGAQ P +L G D GFDP + Sbjct: 161 VWFPGAQPPAHLTGEYPADRGFDPLSV 187
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 33.9 bits (76), Expect = 0.11 Identities = 21/53 (39%), Positives = 23/53 (43%) Frame = +1 Query: 7 RHPNARKGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGAAERAHRGAVRL 165 R R GRGG+ GR G PR GGPG RA RG VR+ Sbjct: 1442 RGRGGRGGRGGR-------------GRGGGRAPRGGGGGPGGGGRAGRGEVRV 1481
>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,| chloroplast precursor (CAB) Length = 268 Score = 32.3 bits (72), Expect = 0.31 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +2 Query: 239 AQAPEYLDGTLVGDYGFDPFGLGKPAE 319 AQ P YL+G GDYG+D GL E Sbjct: 64 AQTPSYLNGEFPGDYGWDTAGLSADPE 90
>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,| chloroplast precursor (DE Chlorophyll a-b binding protein type I F3) (CAB-F3) (LHCP) Length = 265 Score = 32.3 bits (72), Expect = 0.31 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = +2 Query: 212 TDRPLW---FPGAQAPEYLDGTLVGDYGFDPFGLGKPAE 319 +DRPL+ F G+ P YL G GDYG+D GL E Sbjct: 52 SDRPLYLGPFSGSP-PSYLSGEFPGDYGWDTAGLSADPE 89
>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type III CAB-13) Length = 265 Score = 32.3 bits (72), Expect = 0.31 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +2 Query: 239 AQAPEYLDGTLVGDYGFDPFGLGKPAE 319 AQ P YL+G GDYG+D GL E Sbjct: 61 AQTPSYLNGEFPGDYGWDTAGLSADPE 87
>CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chloroplast| precursor (LHCII type I CAB-AB10) (LHCP) Length = 268 Score = 32.0 bits (71), Expect = 0.40 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Frame = +2 Query: 113 RLADPA---PQNGRIVARFGFGXXXXXXXXXXXXXTTDRPLWFPG---AQAPEYLDGTLV 274 ++A P+ P + ++ GF T DR + + G + P YL G Sbjct: 19 KIAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTCDRRVKYLGPFSGEWPSYLTGEFP 78 Query: 275 GDYGFDPFGL 304 GDYG+D GL Sbjct: 79 GDYGWDTAGL 88
>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,| chloroplast precursor (Chlorophyll a-b binding protein type II 1A) (CAB) (LHCP) Length = 278 Score = 31.6 bits (70), Expect = 0.52 Identities = 24/87 (27%), Positives = 30/87 (34%), Gaps = 14/87 (16%) Frame = +2 Query: 101 FLGTRLADPAPQNG------------RIVARFGFGXXXXXXXXXXXXXTTDRPLWFP--G 238 F G +L+ PQN R+ R G DR L+ Sbjct: 16 FAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFS 75 Query: 239 AQAPEYLDGTLVGDYGFDPFGLGKPAE 319 + P YL G GDYG+D GL E Sbjct: 76 GEPPSYLTGEFPGDYGWDTAGLSADPE 102
>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 269 Score = 31.6 bits (70), Expect = 0.52 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = +2 Query: 215 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAE 319 DRP + + P YL+G GDYG+D GL E Sbjct: 56 DRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPE 92
>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 263 Score = 31.2 bits (69), Expect = 0.68 Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 8/82 (9%) Frame = +2 Query: 98 TFLGTRLADPAPQNGRIVARFGFGXXXXXXXXXXXXXTT------DRPLWFP--GAQAPE 253 +FLGT AP+ +V R G DRP + Q P Sbjct: 11 SFLGT-----APRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPS 65 Query: 254 YLDGTLVGDYGFDPFGLGKPAE 319 YL G GDYG+D GL E Sbjct: 66 YLTGEFPGDYGWDTAGLSADPE 87
>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor| (LHCII type I CAB-5) (LHCP) (Fragment) Length = 237 Score = 30.8 bits (68), Expect = 0.89 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +2 Query: 215 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAE 319 DRP + Q P YL G GDYG+D GL E Sbjct: 25 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 61
>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor| (LHCII type I CAB-37) (LHCP) Length = 265 Score = 30.8 bits (68), Expect = 0.89 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +2 Query: 215 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAE 319 DRP + Q P YL G GDYG+D GL E Sbjct: 53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCII type I CAB-4) (LHCP) Length = 265 Score = 30.8 bits (68), Expect = 0.89 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +2 Query: 215 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAE 319 DRP + Q P YL G GDYG+D GL E Sbjct: 53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor| (LHCII type I CAB-36) (LHCP) Length = 265 Score = 30.8 bits (68), Expect = 0.89 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +2 Query: 215 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAE 319 DRP + Q P YL G GDYG+D GL E Sbjct: 53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type II CAB-1A) (LHCP) Length = 278 Score = 30.8 bits (68), Expect = 0.89 Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 14/87 (16%) Frame = +2 Query: 101 FLGTRLADPAPQNG------------RIVARFGFGXXXXXXXXXXXXXTTDRPLWFP--G 238 F G +L+ PQN R+ R G DR ++ Sbjct: 16 FAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFS 75 Query: 239 AQAPEYLDGTLVGDYGFDPFGLGKPAE 319 + P YL G GDYG+D GL E Sbjct: 76 GEPPSYLTGEFPGDYGWDTAGLSADPE 102
>CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) (Fragment) Length = 205 Score = 30.8 bits (68), Expect = 0.89 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +2 Query: 215 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAE 319 DRP + Q P YL G GDYG+D GL E Sbjct: 52 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 88
>COHA1_HUMAN (Q9UMD9) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) Length = 1497 Score = 30.8 bits (68), Expect = 0.89 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = +1 Query: 13 PNARKGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGAAERAHRGA 156 P KG+ G + + GR G PR AG PG+ E+ RGA Sbjct: 601 PQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGSGEKGERGA 648
>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor| (Allergen Api g 3) Length = 264 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 +AP YL G GDYG+D GL E Sbjct: 63 EAPSYLTGEFPGDYGWDTAGLSADPE 88
>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 264 Score = 30.4 bits (67), Expect = 1.2 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +2 Query: 215 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAE 319 DRP + Q P YL G GDYG+D GL E Sbjct: 52 DRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 88
>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCII type I CAB-7) (LHCP) Length = 267 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 +AP YL G GDYG+D GL E Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPE 91
>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor| (LHCII type I CAB-25) (LHCP) Length = 266 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 +AP YL G GDYG+D GL E Sbjct: 65 EAPSYLTGEFPGDYGWDTAGLSADPE 90
>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor| (LHCII type II CAB-215) (LHCP) Length = 265 Score = 30.4 bits (67), Expect = 1.2 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +2 Query: 215 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAE 319 DRP + Q P YL G GDYG+D GL E Sbjct: 53 DRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPE 89
>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor| (LHCII type I CAB-22L) (LHCP) Length = 267 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 +AP YL G GDYG+D GL E Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPE 91
>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor| (LHCII type II CAB-151) (LHCP) Length = 265 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +2 Query: 215 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAE 319 DRP + Q P YL G GDYG+D GL E Sbjct: 53 DRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPE 89
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +1 Query: 25 KGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGA 132 KG GG ++ G RGEH P PAG PGA Sbjct: 778 KGEGGSPGLPGIAGPRGGPGERGEHGPPGPAGFPGA 813
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +1 Query: 25 KGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGA 132 KG GG ++ G RGEH P PAG PGA Sbjct: 778 KGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGA 813
>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type I CAB-13) (LHCP) Length = 266 Score = 29.6 bits (65), Expect = 2.0 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGL 304 +AP YL G GDYG+D GL Sbjct: 65 EAPSYLTGEFPGDYGWDTAGL 85
>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +2 Query: 230 FPGAQAPEYLDGTLVGDYGFDPFGL 304 F PEYL G GDYG+D GL Sbjct: 45 FSENDTPEYLTGEFPGDYGWDTAGL 69
>HNRL1_MOUSE (Q8VDM6) Heterogeneous nuclear ribonucleoprotein U-like protein 1| Length = 859 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = +1 Query: 25 KGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGAAERAHRG 153 +GRGG +R + G GG RG R GG G +RG Sbjct: 618 RGRGGGGGFQRYDNRGPPGGNRGGFQNRGGGGGSGGGGGNYRG 660
>CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor| Length = 3137 Score = 29.3 bits (64), Expect = 2.6 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Frame = +1 Query: 16 NARKGRGGQS*EERVSSHGFVG--GRRGEHVPRDPAGGPG-AAERAHRG 153 + R G GG + R GFVG G +G R AGGPG R RG Sbjct: 2301 DGRDGIGGPGPKGRKGERGFVGYPGPKGGPGDRGGAGGPGPKGNRGRRG 2349
>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 264 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 ++P YL G GDYG+D GL E Sbjct: 63 ESPSYLTGEFPGDYGWDTAGLSADPE 88
>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 256 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 2/37 (5%) Frame = +2 Query: 215 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAE 319 DR W P YL G GDYG+D GL E Sbjct: 43 DRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPE 79
>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I| CAB-AB96) (LHCP) (Major 15) (Fragment) Length = 228 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 ++P YL G GDYG+D GL E Sbjct: 27 ESPSYLTGEFPGDYGWDTAGLSADPE 52
>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor| (LHCII type I CAB-E) (LHCP) Length = 266 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 ++P YL G GDYG+D GL E Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPE 90
>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor| (LHCII type I CAB-16) (LHCP) Length = 266 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 ++P YL G GDYG+D GL E Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPE 90
>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor| (LHCII type I CAB-3C) (LHCP) Length = 267 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 ++P YL G GDYG+D GL E Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPE 91
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor| (LHCII type I CAB-1B) (LHCP) Length = 265 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 ++P YL G GDYG+D GL E Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPE 89
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 267 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 ++P YL G GDYG+D GL E Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPE 91
>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCII type I CAB-8) Length = 268 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 ++P YL G GDYG+D GL E Sbjct: 67 ESPSYLTGEFPGDYGWDTAGLSADPE 92
>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor| (LHCII type I CAB-50) (LHCP) Length = 267 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 ++P YL G GDYG+D GL E Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPE 91
>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor| (LHCII type I CAB-40) (LHCP) Length = 267 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 ++P YL G GDYG+D GL E Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPE 91
>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor| (LHCII type I CAB-C) (LHCP) Length = 267 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 ++P YL G GDYG+D GL E Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPE 91
>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor| (LHCII type I CAB-21) (LHCP) Length = 265 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 ++P YL G GDYG+D GL E Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPE 89
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (CAB-140) (LHCP) Length = 267 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 ++P YL G GDYG+D GL E Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPE 90
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast| precursor (LHCII type I CAB-165/180) Length = 267 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 ++P YL G GDYG+D GL E Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPE 90
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast| precursor (LHCII type I CAB-AB80) (LHCP) Length = 269 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 ++P YL G GDYG+D GL E Sbjct: 68 ESPSYLTGEFPGDYGWDTAGLSADPE 93
>PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (PNUTS protein) (MHC class I region proline-rich protein CAT53) Length = 872 Score = 28.9 bits (63), Expect = 3.4 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +1 Query: 13 PNARKGRGGQS*EERVSSHGFVGGRRGEHVPRD-PAGGPGAAERAHRG 153 PN R G GG G VGG G H P + P G G+ R+H G Sbjct: 734 PNGRGGPGGG---------GMVGG--GGHRPHEGPGGSMGSGHRSHEG 770
>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 266 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%) Frame = +2 Query: 212 TDRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAE 319 +DR L+ + P YL G GDYG+D GL E Sbjct: 53 SDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE 90
>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 206 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 + P YL G GDYG+D GL E Sbjct: 5 EPPSYLTGEFPGDYGWDTAGLSADPE 30
>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor| (LHCII type I CAB-3) (LHCP) Length = 263 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 + P YL G GDYG+D GL E Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPE 87
>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) (Fragment) Length = 255 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 + P YL G GDYG+D GL E Sbjct: 54 EPPSYLTGEFPGDYGWDTAGLSADPE 79
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 261 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 + P YL G GDYG+D GL E Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPE 85
>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,| chloroplast precursor (Chlorophyll a-b binding protein type II 1B) (CAB) (LHCP) Length = 274 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 + P YL G GDYG+D GL E Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSADPE 98
>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 262 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 + P YL G GDYG+D GL E Sbjct: 61 EPPSYLTGEFPGDYGWDTAGLSADPE 86
>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 266 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 + P YL G GDYG+D GL E Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPE 89
>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor| (LHCII type I CAB-M9) (LHCP) Length = 265 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 + P YL G GDYG+D GL E Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPE 89
>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 265 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 + P YL G GDYG+D GL E Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPE 89
>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 265 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 + P YL G GDYG+D GL E Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPE 89
>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) (Fragment) Length = 245 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 + P YL G GDYG+D GL E Sbjct: 44 EPPSYLTGEFPGDYGWDTAGLSADPE 69
>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor| (LHCII type I CAB-22R) (LHCP) Length = 267 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 +AP YL G DYG+D GL E Sbjct: 66 EAPSYLTGEFPSDYGWDTAGLSADPE 91
>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor| (LHCII type I CAB-48) (LHCP) Length = 264 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +2 Query: 248 PEYLDGTLVGDYGFDPFGLGKPAE 319 P YL G GDYG+D GL E Sbjct: 65 PSYLTGEFPGDYGWDTEGLSADPE 88
>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +2 Query: 248 PEYLDGTLVGDYGFDPFGLGKPAE 319 P YL G GDYG+D GL E Sbjct: 54 PAYLTGEFPGDYGWDTAGLSADPE 77
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 27.3 bits (59), Expect = 9.9 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Frame = +1 Query: 28 GRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPG-AAERAHRGA 156 G GQ+ E ++ G +GE P P G PG A E RGA Sbjct: 382 GPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEEGKRGA 425
>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1459 Score = 27.3 bits (59), Expect = 9.9 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = +1 Query: 28 GRGGQS*EERVSSHGFVG--GRRGEHVPRDPAGGPG-AAERAHRGA 156 G GQ+ E ++ GF G G +GE P P G PG A E RGA Sbjct: 422 GPKGQAGEPGIA--GFKGDQGPKGETGPAGPQGAPGPAGEEGKRGA 465
>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor| (LHCII type I CAB-91R) (LHCP) Length = 267 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 242 QAPEYLDGTLVGDYGFDPFGLGKPAE 319 +AP YL G GDYG+D L E Sbjct: 66 EAPSYLTGEFPGDYGWDTAELSADPE 91
>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 925 Score = 27.3 bits (59), Expect = 9.9 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%) Frame = +1 Query: 13 PNARKGRGGQS*EERVSSHGFVGGRRGEHVPRD-PAGGPGAAERAHRG 153 P+ G G S G GG G H P + P GG G R H G Sbjct: 756 PHEGPGGGMSSGSGHRPHEGPGGGMGGGHRPHEGPGGGMGGGHRPHEG 803 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,449,234 Number of Sequences: 219361 Number of extensions: 498975 Number of successful extensions: 1636 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 1389 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1629 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
