ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet69b06 |
|---|---|
| Clone Library Name | barley_pub |
>LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine| oxidase flavin-containing domain protein 2) (AOF2 protein) (BRAF35-HDAC complex protein BHC110) Length = 853 Score = 32.7 bits (73), Expect = 0.23 Identities = 17/40 (42%), Positives = 19/40 (47%) Frame = -1 Query: 202 PPEGVPLDGVPLPHPEAGEQASTTVGEGSTSMARTSSAET 83 PP P G+ P AG QA T G GS + T AET Sbjct: 66 PPRASPPGGLAEPPGSAGPQAGPTAGPGSATPMETGIAET 105
>SYL_HAEDU (Q7VM66) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 861 Score = 30.8 bits (68), Expect = 0.86 Identities = 17/43 (39%), Positives = 24/43 (55%) Frame = -1 Query: 199 PEGVPLDGVPLPHPEAGEQASTTVGEGSTSMARTSSAETFVDS 71 PE V +DGV P E A TT EG ++ T + +TF++S Sbjct: 455 PENVVMDGVQSPIKSDPEWAKTTY-EGQPALKETDTFDTFMES 496
>LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine| oxidase flavin-containing domain protein 2) (BRAF35-HDAC complex protein BHC110) Length = 852 Score = 30.8 bits (68), Expect = 0.86 Identities = 17/40 (42%), Positives = 19/40 (47%) Frame = -1 Query: 202 PPEGVPLDGVPLPHPEAGEQASTTVGEGSTSMARTSSAET 83 PP P G+ P AG QA TV GS + T AET Sbjct: 65 PPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAET 104
>DPOD3_HUMAN (Q15054) DNA polymerase delta subunit 3 (DNA polymerase delta| subunit p66) Length = 466 Score = 30.8 bits (68), Expect = 0.86 Identities = 18/59 (30%), Positives = 26/59 (44%) Frame = -1 Query: 205 PPPEGVPLDGVPLPHPEAGEQASTTVGEGSTSMARTSSAETFVDSIAATTCELWRSTES 29 PPP PL+ VP PE S++ GE R ++T++D E +ES Sbjct: 352 PPPPSPPLEPVPKTEPEPPSVKSSS-GENKRKRKRVLKSKTYLDGEGCIVTEKVYESES 409
>SYL_ERWCT (Q6D7L6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = -1 Query: 199 PEGVPLDGVPLPHPEAGEQASTTVGEGSTSMARTSSAETFVDS 71 PE V +DG+ P E A TTV G ++ T + +TF++S Sbjct: 455 PEDVVMDGITSPLKSNPEWAKTTV-NGQPALRETDTFDTFMES 496
>SYL_PHOLL (Q7N755) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -1 Query: 199 PEGVPLDGVPLPHPEAGEQASTTVGEGSTSMARTSSAETFVDS 71 PE V +DG+ P E A TT+ G ++ T + +TF++S Sbjct: 455 PEDVKMDGITSPIKADPEWAKTTI-NGQPALRETDTFDTFMES 496
>SYL_ECOLI (P07813) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Frame = -1 Query: 199 PEGVPLDGVPLPHPEAGEQASTTVGEGSTSMARTSSAETFVDS---IAATTCELWR 41 PE V +DG+ P E A TTV G ++ T + +TF++S A TC ++ Sbjct: 455 PEDVVMDGITSPIKADPEWAKTTV-NGMPALRETDTFDTFMESSWYYARYTCPQYK 509
>SYL_SHIFL (Q83LX5) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = -1 Query: 199 PEGVPLDGVPLPHPEAGEQASTTVGEGSTSMARTSSAETFVDS 71 PE V +DG+ P E A TTV G ++ T + +TF++S Sbjct: 455 PEDVVMDGITSPIKADPEWAKTTV-NGMPALRETDTFDTFMES 496
>SYL_SALTY (Q8ZQZ6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = -1 Query: 199 PEGVPLDGVPLPHPEAGEQASTTVGEGSTSMARTSSAETFVDS 71 PE V +DG+ P E A TTV G ++ T + +TF++S Sbjct: 455 PEDVVMDGITSPIKADPEWAKTTV-NGMPALRETDTFDTFMES 496
>SYL_SALTI (Q8Z8H5) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = -1 Query: 199 PEGVPLDGVPLPHPEAGEQASTTVGEGSTSMARTSSAETFVDS 71 PE V +DG+ P E A TTV G ++ T + +TF++S Sbjct: 455 PEDVVMDGITSPIKADPEWAKTTV-NGMPALRETDTFDTFMES 496
>SYL_ECOL6 (Q8FJY9) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = -1 Query: 199 PEGVPLDGVPLPHPEAGEQASTTVGEGSTSMARTSSAETFVDS 71 PE V +DG+ P E A TTV G ++ T + +TF++S Sbjct: 455 PEDVVMDGITSPIKADPEWAKTTV-NGMPALRETDTFDTFMES 496
>DUS8_MOUSE (O09112) Dual specificity protein phosphatase 8 (EC 3.1.3.48) (EC| 3.1.3.16) (Neuronal tyrosine threonine phosphatase 1) Length = 663 Score = 29.3 bits (64), Expect = 2.5 Identities = 18/66 (27%), Positives = 26/66 (39%) Frame = -1 Query: 205 PPPEGVPLDGVPLPHPEAGEQASTTVGEGSTSMARTSSAETFVDSIAATTCELWRSTESA 26 P P P G+PLP S G + + AR S D+ +T + + Sbjct: 316 PEPLMGPAAGIPLPRLPPSTSESAATGSEAATAAREGSPSAGGDAPIPSTAPATSALQQG 375 Query: 25 LRGVLL 8 LRG+ L Sbjct: 376 LRGLHL 381
>DIG1_CAEEL (Q09165) Mesocentin precursor| Length = 13100 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Frame = -1 Query: 217 EMLMPPPEGVPL--DGVPLPHPEAGEQASTTVGEGSTSMARTSSAETFVDSI 68 E + G+PL DG PLP G EG+T T +E+ V I Sbjct: 5185 ETIATDENGIPLSKDGSPLPTDNTGNYVLVPSDEGATEEKPTQGSESIVHPI 5236
>SETBP_MOUSE (Q9Z180) SET-binding protein (SEB)| Length = 1535 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -1 Query: 178 GVPLPHPEAGEQASTTVGEGSTSMARTSSAETFVDSIA 65 G+P PH + + A+ + EGS S T VDS+A Sbjct: 1276 GMPSPHLKVDQTAAHSKSEGSISAMMARKKPTAVDSVA 1313
>DEGX_CAEEL (Q09274) Degenerin-like protein C41C4.5 in chromosome II| Length = 849 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +2 Query: 53 TGGCCNGVHEGLRAAGSGHARAPLAHCRARLLPRLRVRQWH 175 +G G+ L A G HA+ A +A+ PRLR R++H Sbjct: 132 SGDKTEGIAAALSATGGLHAKVRRAKRKAKGKPRLRDRRYH 172
>SYL_YERPS (Q66DE3) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -1 Query: 199 PEGVPLDGVPLPHPEAGEQASTTVGEGSTSMARTSSAETFVDS 71 PE V +DG+ P E A TTV G + T + +TF++S Sbjct: 455 PEDVVMDGISSPIKADPEWAKTTV-NGIPGLRETDTFDTFMES 496
>SYL_YERPE (Q8ZDF8) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -1 Query: 199 PEGVPLDGVPLPHPEAGEQASTTVGEGSTSMARTSSAETFVDS 71 PE V +DG+ P E A TTV G + T + +TF++S Sbjct: 455 PEDVVMDGISSPIKADPEWAKTTV-NGIPGLRETDTFDTFMES 496
>SYL_PHOPR (Q6LN98) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 858 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -1 Query: 199 PEGVPLDGVPLPHPEAGEQASTTVGEGSTSMARTSSAETFVDS 71 PE V +DGV P E A TT G ++ T + +TF++S Sbjct: 455 PENVVMDGVTSPIKADKEWAKTTF-NGEPALRETDTFDTFMES 496
>SYI_THIDA (Q3SHS3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 929 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -1 Query: 193 GVPLDGVPLPHPEAGEQASTTVGEGSTSMARTSSAET 83 G L+G+PL HP Q VGE T+ A T + T Sbjct: 296 GQMLEGLPLWHPFQDRQVPVIVGEHVTADAGTGAVHT 332
>TCRG1_MOUSE (Q8CGF7) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) (p144) (Formin-binding protein 28) (FBP 28) Length = 1100 Score = 25.4 bits (54), Expect(2) = 5.3 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -1 Query: 211 LMPPPEGVPLDGVPLPHP 158 +M PP VPL G+P+P P Sbjct: 363 VMVPPFRVPLPGMPIPLP 380 Score = 21.2 bits (43), Expect(2) = 5.3 Identities = 9/31 (29%), Positives = 17/31 (54%) Frame = -1 Query: 175 VPLPHPEAGEQASTTVGEGSTSMARTSSAET 83 VP+ HP+ AS G+T+++ + +T Sbjct: 412 VPMIHPQVAIAASPATLAGATAVSEWTEYKT 442
>TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) Length = 1098 Score = 25.4 bits (54), Expect(2) = 5.3 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -1 Query: 211 LMPPPEGVPLDGVPLPHP 158 +M PP VPL G+P+P P Sbjct: 361 VMVPPFRVPLPGMPIPLP 378 Score = 21.2 bits (43), Expect(2) = 5.3 Identities = 9/31 (29%), Positives = 17/31 (54%) Frame = -1 Query: 175 VPLPHPEAGEQASTTVGEGSTSMARTSSAET 83 VP+ HP+ AS G+T+++ + +T Sbjct: 410 VPMIHPQVAIAASPATLAGATAVSEWTEYKT 440
>SYL_ECO57 (Q8XBN8) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -1 Query: 199 PEGVPLDGVPLPHPEAGEQASTTVGEGSTSMARTSSAETFVDS 71 PE V +DG+ P + A TTV G ++ T + +TF++S Sbjct: 455 PEDVVMDGITSPIKADPQWAKTTV-NGMPALRETDTFDTFMES 496
>FAS_MOUSE (P19096) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl- Length = 2504 Score = 28.1 bits (61), Expect = 5.6 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%) Frame = -1 Query: 166 PHPEAGEQASTTVGEGS--TSMARTSSAETFVDSIAATTC---ELWRSTESAL 23 P P + ST++ E +S+ARTSSAE V+++ + LW E A+ Sbjct: 705 PRPRSARWLSTSIPEAQWQSSLARTSSAEYNVNNLVSPVLFQEALWHIPEHAV 757
>RS2_BOVIN (O18789) 40S ribosomal protein S2 (Fragment)| Length = 286 Score = 28.1 bits (61), Expect = 5.6 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%) Frame = -1 Query: 211 LMPPPEGVPLDGVPLPHP---EAGEQASTTVGEGSTSMARTSSAETFVDSIAAT----TC 53 L+PPP G + P+P AG T G T+ + TF D+I+ T T Sbjct: 188 LIPPPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATF-DAISKTYSYLTP 246 Query: 52 ELWRST 35 +LW+ T Sbjct: 247 DLWKET 252
>FAS_RAT (P12785) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl-ca Length = 2505 Score = 28.1 bits (61), Expect = 5.6 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%) Frame = -1 Query: 166 PHPEAGEQASTTVGEGS--TSMARTSSAETFVDSIAATTC---ELWRSTESAL 23 P P + ST++ E +S+ARTSSAE V+++ + LW E A+ Sbjct: 705 PRPRSARWLSTSIPEAQWQSSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAV 757
>NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cataracts and| dental anomalies protein) Length = 1630 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = -1 Query: 205 PPPEGVPLDGVPLPHPE---AGEQASTTVGEGSTSMARTSSA 89 PPP P D PH E AGE+++ + E + + SSA Sbjct: 71 PPPLPAPADQTQPPHGEASVAGEESTAGIPEAAPAAGEASSA 112
>METX_PSEAE (P57714) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) (Homoserine transacetylase) (HTA) Length = 379 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +2 Query: 128 HCRARLLPRLRVRQWHAVERHALG 199 H +ARL RL +RQW AV +LG Sbjct: 136 HSQARLADRLGIRQWAAVVGGSLG 159
>FRIZ2_DROME (Q9VVX3) Protein frizzled-2 precursor (dFz2)| Length = 694 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -1 Query: 172 PLPHPEAGEQASTTVGEGSTSMARTSSAETFVDSIAATT 56 P+PHP AG VG + S+ T + S+A+T+ Sbjct: 639 PIPHPYAGSGMGMPVGSAAGSLLATPYTQAGGASVASTS 677
>FAS_HUMAN (P49327) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl- Length = 2511 Score = 27.7 bits (60), Expect = 7.3 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%) Frame = -1 Query: 166 PHPEAGEQASTTVGEGS--TSMARTSSAETFVDSIAATTC---ELWRSTESAL 23 P P + ST++ E +S+ARTSSAE V+++ + LW E A+ Sbjct: 705 PKPRSARWLSTSIPEAQWHSSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAV 757
>YOW5_CAEEL (P30651) Hypothetical protein ZK643.5| Length = 487 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 6/37 (16%) Frame = -1 Query: 199 PEGVPLDGVPLPHPEAG------EQASTTVGEGSTSM 107 P G+PL GVP H AG +QA G G M Sbjct: 187 PNGIPLIGVPSSHGRAGFGANYQDQARMAAGGGMAGM 223
>TBX21_MOUSE (Q9JKD8) T-box transcription factor TBX21 (T-box protein 21)| (Transcription factor TBLYM) (T-cell-specific T-box transcription factor T-bet) Length = 530 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 4/23 (17%) Frame = -1 Query: 205 PPPEGV----PLDGVPLPHPEAG 149 PPP G P+DG P P P AG Sbjct: 93 PPPAGAEGYPPVDGYPAPDPRAG 115 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,447,757 Number of Sequences: 219361 Number of extensions: 395581 Number of successful extensions: 2281 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 2102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2270 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
