| Clone Name | baet68e09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0088K21, complete sequence Length = 153239 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 280 gatggcgccgcgcggcggtgggcagacctacggcttccccatctactgcgcctcctggct 339 |||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 24911 gatggcgcggcgcggcggcgggcagacgtacgggttcccgatctactgcgcctcgtggct 24852 Query: 340 cccactcgcacacatcatcaa 360 || ||||| |||||| |||| Sbjct: 24851 gcccctcgcccacatcctcaa 24831
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 280 gatggcgccgcgcggcggtgggcagacctacggcttccccatctactgcgcctcctggct 339 |||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 22765194 gatggcgcggcgcggcggcgggcagacgtacgggttcccgatctactgcgcctcgtggct 22765135 Query: 340 cccactcgcacacatcatcaa 360 || ||||| |||||| |||| Sbjct: 22765134 gcccctcgcccacatcctcaa 22765114
>dbj|AK099760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093M02, full insert sequence Length = 1617 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Plus Query: 280 gatggcgccgcgcggcggtgggcagacctacggcttccccatctactgcgcctcctggct 339 |||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 45 gatggcgcggcgcggcggcgggcagacgtacgggttcccgatctactgcgcctcgtggct 104 Query: 340 cccactcgcacacatcatcaa 360 || ||||| |||||| |||| Sbjct: 105 gcccctcgcccacatcctcaa 125
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 280 gatggcgccgcgcggcggtgggcagacctacggcttccccatctactgcgcctcctggct 339 |||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 23075104 gatggcgcggcgcggcggcgggcagacgtacgggttcccgatctactgcgcctcgtggct 23075045 Query: 340 cccactcgcacacatcatcaa 360 || ||||| |||||| |||| Sbjct: 23075044 gcccctcgcccacatcctcaa 23075024
>gb|BT018746.1| Zea mays clone EL01N0521H09.d mRNA sequence Length = 1619 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 290 cgcggcggtgggcagacctacggcttccccatctactgcgcctcctggctcccactcgca 349 ||||||||| | ||| ||||||||||||| |||||||||||| |||||||||| ||||| Sbjct: 148 cgcggcggtagccagtcctacggcttcccgatctactgcgccgcctggctcccgctcgcc 207 Query: 350 cacatcatcaagccc 364 |||||| | |||||| Sbjct: 208 cacatcctgaagccc 222
>emb|AL360272.23| Human DNA sequence from clone RP11-169I2 on chromosome 6 Contains the 3' end of the SUPT3H gene for suppressor of Ty 3 homolog (S. cerevisiae), complete sequence Length = 110382 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 11 cctcccttcccctatcttctcct 33 ||||||||||||||||||||||| Sbjct: 108387 cctcccttcccctatcttctcct 108409
>gb|AC068991.28| Homo sapiens 12 BAC RP11-300D9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173639 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 11 cctcccttcccctatcttctcct 33 ||||||||||||||||||||||| Sbjct: 113721 cctcccttcccctatcttctcct 113743
>gb|AC007065.5|AC007065 Homo sapiens, clone hRPK.58_A_1, complete sequence Length = 169325 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 11 cctcccttcccctatcttctcct 33 ||||||||||||||||||||||| Sbjct: 109423 cctcccttcccctatcttctcct 109445
>gb|AY539836.1| Burkholderia cenocepacia phage BcepMu, complete genome Length = 36748 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 369 catctgccgtagacgtcgcggatgcg 394 ||||||||||| |||||||||||||| Sbjct: 34605 catctgccgtaaacgtcgcggatgcg 34580
>ref|XM_508509.1| PREDICTED: Pan troglodytes similar to solute carrier family 22 member 6 isoform b; renal organic anion transporter 1; para-aminohippurate transporter (LOC451273), mRNA Length = 1827 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 726 cttccccatctactgcgccttccggctcc 754
>gb|BC033682.1| Homo sapiens solute carrier family 22 (organic anion transporter), member 6, transcript variant 2, mRNA (cDNA clone MGC:45260 IMAGE:5190748), complete cds Length = 2180 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 845 cttccccatctactgcgccttccggctcc 873
>gb|AC112219.2| Homo sapiens chromosome 3 clone RP11-433A10, complete sequence Length = 155472 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 ctcccttcccctatcttctcc 32 ||||||||||||||||||||| Sbjct: 145890 ctcccttcccctatcttctcc 145910
>dbj|AK091879.1| Homo sapiens cDNA FLJ34560 fis, clone KIDNE2001857, highly similar to Homo sapiens organic anion transporter 1 (OAT1) mRNA Length = 2107 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 810 cttccccatctactgcgccttccggctcc 838
>dbj|AK055764.1| Homo sapiens cDNA FLJ31202 fis, clone KIDNE2003188, highly similar to Homo sapiens para-aminohippurate transporter mRNA Length = 2095 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 798 cttccccatctactgcgccttccggctcc 826
>dbj|AB182992.1| Macaca fascicularis OAT1 mRNA for organic anion transporter 1, complete cds Length = 1979 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 709 cttccccatctactgcgccttccggctcc 737
>gb|AF057039.2|AF057039 Homo sapiens putative renal organic anion transporter 1 (hROAT1) mRNA, complete cds Length = 2090 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 796 cttccccatctactgcgccttccggctcc 824
>emb|AJ249369.1|HSA249369 Homo sapiens OAT1 gene, exons 1-10 Length = 8635 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 1657 cttccccatctactgcgccttccggctcc 1685
>emb|AJ251529.1|HSA251529 Homo sapiens mRNA for putative organic anion transporter (OAT1 gene, splice variant OAT1-3) Length = 1521 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 552 cttccccatctactgcgccttccggctcc 580
>emb|AJ271205.1|HSA271205 Homo sapiens mRNA for putative organic anion transporter (OAT1-4 gene) Length = 1560 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 552 cttccccatctactgcgccttccggctcc 580
>gb|AF124373.1|AF124373 Homo sapiens organic anion transporter 1 (SLC22A6) mRNA, complete cds Length = 2118 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 809 cttccccatctactgcgccttccggctcc 837
>ref|NM_004790.3| Homo sapiens solute carrier family 22 (organic anion transporter), member 6 (SLC22A6), transcript variant 1, mRNA Length = 2196 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 859 cttccccatctactgcgccttccggctcc 887
>ref|NM_153279.1| Homo sapiens solute carrier family 22 (organic anion transporter), member 6 (SLC22A6), transcript variant 5, mRNA Length = 2131 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 796 cttccccatctactgcgccttccggctcc 824
>ref|NM_153277.1| Homo sapiens solute carrier family 22 (organic anion transporter), member 6 (SLC22A6), transcript variant 3, mRNA Length = 2025 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 859 cttccccatctactgcgccttccggctcc 887
>ref|NM_153278.1| Homo sapiens solute carrier family 22 (organic anion transporter), member 6 (SLC22A6), transcript variant 4, mRNA Length = 2064 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 859 cttccccatctactgcgccttccggctcc 887
>ref|NM_153276.1| Homo sapiens solute carrier family 22 (organic anion transporter), member 6 (SLC22A6), transcript variant 2, mRNA Length = 2194 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 859 cttccccatctactgcgccttccggctcc 887
>gb|AF097490.1|AF097490 Homo sapiens organic anion transporter 1 (OAT1) mRNA, complete cds Length = 1653 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 552 cttccccatctactgcgccttccggctcc 580
>gb|AF104038.1|AF104038 Homo sapiens para-aminohippurate transporter mRNA, complete cds Length = 2088 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 793 cttccccatctactgcgccttccggctcc 821
>dbj|AP001858.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-959F10, complete sequence Length = 210723 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 9391 cttccccatctactgcgccttccggctcc 9363
>dbj|D83711.1| Nicotiana tabacum TKRP125 mRNA, complete cds Length = 3553 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 190 cacctccacctccgcacacacgcactctctcac 222 |||| |||||||||||||||| | ||||||||| Sbjct: 9 cacccccacctccgcacacacactctctctcac 41
>dbj|AB009698.1| Homo sapiens mRNA for hOAT1-2, complete cds Length = 2113 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 816 cttccccatctactgcgccttccggctcc 844
>dbj|AB009697.1| Homo sapiens mRNA for hOAT1-1, complete cds Length = 2151 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 cttccccatctactgcgcctcctggctcc 341 |||||||||||||||||||| | |||||| Sbjct: 819 cttccccatctactgcgccttccggctcc 847
>gb|AC126553.4| Mus musculus BAC clone RP23-448L16 from chromosome 18, complete sequence Length = 184463 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 gccccccatggtggtccttg 440 |||||||||||||||||||| Sbjct: 122419 gccccccatggtggtccttg 122438
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 tgtgatggcgccgcgcggcg 296 |||||||||||||||||||| Sbjct: 3726295 tgtgatggcgccgcgcggcg 3726276
>emb|AL353799.14| Human DNA sequence from clone RP5-1019A8 on chromosome 20 Contains the 5' end of the ATP9A gene for ATPase, class II, type 9A (KIAA0611), ESTs, STSs, GSSs and a CpG island, complete sequence Length = 35138 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 ccccgtccttcccacctccgcccc 425 |||||||||||||||| ||||||| Sbjct: 25216 ccccgtccttcccacccccgcccc 25239
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ccggcgaccaccgcccacct 249 |||||||||||||||||||| Sbjct: 181172 ccggcgaccaccgcccacct 181153
>emb|AL662783.13| Mouse DNA sequence from clone RP23-378N18 on chromosome 11 Contains the 5' end of a novel gene, a novel gene (4933430M04Rik) and a pseudogene similar to part of DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (Ddx5), complete sequence Length = 181503 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 aatcccaatctcctgtatct 76 |||||||||||||||||||| Sbjct: 85905 aatcccaatctcctgtatct 85886
>gb|AC109360.3| Homo sapiens BAC clone RP11-685O6 from 4, complete sequence Length = 53805 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 cacacacgcactctctcacc 223 |||||||||||||||||||| Sbjct: 37268 cacacacgcactctctcacc 37249
>emb|AL954329.7| Zebrafish DNA sequence from clone CH211-226C11 in linkage group 23, complete sequence Length = 194284 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 caatctcctgtatctgagct 81 |||||||||||||||||||| Sbjct: 46169 caatctcctgtatctgagct 46188 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,468,710 Number of Sequences: 3902068 Number of extensions: 3468710 Number of successful extensions: 68077 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67962 Number of HSP's gapped (non-prelim): 115 length of query: 449 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 427 effective length of database: 17,147,199,772 effective search space: 7321854302644 effective search space used: 7321854302644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)