ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet68e02 |
|---|---|
| Clone Library Name | barley_pub |
>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) (CW17) Length = 653 Score = 33.5 bits (75), Expect = 0.29 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = +2 Query: 146 GAPPPPPCRRLCIVAFLVSPSSIHPSITSCLSARR 250 GAPPPP C C++ L SP+S+ CLS R Sbjct: 580 GAPPPPTCSIECLLCLLSSPNSL------CLSPNR 608
>Y2590_MYCBO (P59983) Hypothetical protein Mb2590| Length = 325 Score = 32.0 bits (71), Expect = 0.85 Identities = 16/32 (50%), Positives = 17/32 (53%) Frame = +2 Query: 71 PPSPGPLAKPDSINHHAGSAVAWIHGAPPPPP 166 P PG A P N AGS +GAPPPPP Sbjct: 5 PEHPGNPADPQGGNQGAGSYPPPGYGAPPPPP 36
>Y2560_MYCTU (Q50738) Hypothetical protein Rv2560/MT2637| Length = 325 Score = 32.0 bits (71), Expect = 0.85 Identities = 16/32 (50%), Positives = 17/32 (53%) Frame = +2 Query: 71 PPSPGPLAKPDSINHHAGSAVAWIHGAPPPPP 166 P PG A P N AGS +GAPPPPP Sbjct: 5 PEHPGNPADPQGGNQGAGSYPPPGYGAPPPPP 36
>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 26.9 bits (58), Expect(2) = 1.2 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%) Frame = +2 Query: 71 PPSPGPLAKPDSINHHAGSAV--AWIHGAPPPPPCR 172 PPS G P H +G A GAPPPPP R Sbjct: 278 PPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSR 313 Score = 23.1 bits (48), Expect(2) = 1.2 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +2 Query: 149 APPPPPCRRLCIVAFLVSPSSIHP 220 APPPPP R +V P+ ++P Sbjct: 318 APPPPPPSRPGVVVPPPPPNRMYP 341
>WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 26.9 bits (58), Expect(2) = 1.2 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%) Frame = +2 Query: 71 PPSPGPLAKPDSINHHAGSAV--AWIHGAPPPPPCR 172 PPS G P H +G A GAPPPPP R Sbjct: 278 PPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSR 313 Score = 23.1 bits (48), Expect(2) = 1.2 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +2 Query: 149 APPPPPCRRLCIVAFLVSPSSIHP 220 APPPPP R +V P+ ++P Sbjct: 318 APPPPPPSRPGVVVPPPPPNRMYP 341
>CHE1_ANTPO (P05686) Chorion E1 protein precursor| Length = 169 Score = 30.8 bits (68), Expect = 1.9 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Frame = +1 Query: 28 LGSLASQPTPYGLLP--SLPRPPRQTRLHQPSCRL 126 LGSL +QP Y L+P S+P P + SCRL Sbjct: 14 LGSLVAQPITYTLVPTSSIPSQPTTSNERNKSCRL 48
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 30.4 bits (67), Expect = 2.5 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Frame = +2 Query: 71 PPSPGPLAKPDSINHHAGSA----VAWIHGAPPPPPCRR 175 PPSP A P + +HH+ A V + GA PP P RR Sbjct: 1380 PPSPRYEAPPPTPHHHSPHAHHEPVLRLWGASPPDPARR 1418
>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 26.9 bits (58), Expect(2) = 2.6 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%) Frame = +2 Query: 71 PPSPGPLAKPDSINHHAGSAV--AWIHGAPPPPPCR 172 PPS G P H +G A GAPPPPP R Sbjct: 281 PPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSR 316 Score = 21.9 bits (45), Expect(2) = 2.6 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +2 Query: 149 APPPPPCRRLCIVAFLVSPSSIHP 220 APPPPP R + A P+ ++P Sbjct: 321 APPPPPPSRPGVGAPPPPPNRMYP 344
>INSM1_MOUSE (Q63ZV0) Insulinoma-associated protein 1 (Zinc finger protein IA-1)| Length = 521 Score = 30.0 bits (66), Expect = 3.2 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%) Frame = +2 Query: 74 PSPGPLAKPD----SINHHAG--SAVAWIHGAPPPPPCRRLCIVAFLVSPSSIHPS 223 PSPGPL P + HA +A+A G PPPPP A +P + HP+ Sbjct: 46 PSPGPLPPPPPPALAERAHAALAAALACAPGPPPPPPPGPR--AAHFGNPEAAHPA 99
>SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) Length = 833 Score = 30.0 bits (66), Expect = 3.2 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 7/42 (16%) Frame = +2 Query: 71 PPSPGPLAKPDSINHHAGSAVAWIHG-------APPPPPCRR 175 PP P P KP V+WIHG AP PPP R Sbjct: 646 PPPPDPATKP---------KVSWIHGKHSAAAAAPSPPPAGR 678
>VRP1_YEAST (P37370) Verprolin| Length = 817 Score = 29.6 bits (65), Expect = 4.2 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 3/112 (2%) Frame = +2 Query: 41 LASLRPTVSCPPSPGPLAKPDSINHHAGSAVAWIH---GAPPPPPCRRLCIVAFLVSPSS 211 ++S P++S PP PG + P + AG H A P SPS+ Sbjct: 72 VSSKGPSMSAPPIPG-MGAPQLGDILAGGIPKLKHINNNASTKP------------SPSA 118 Query: 212 IHPSITSCLSARRFVVASY*VARDRMQDLFSVPSCFSSGEKQLPDAPASAAP 367 P I + + VA+ + + +VPS SS +PD P+SAAP Sbjct: 119 SAPPIPGAVPS----VAAPPIPNAPLSPAPAVPSIPSSSAPPIPDIPSSAAP 166
>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)| Length = 2001 Score = 25.8 bits (55), Expect(2) = 4.9 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +2 Query: 41 LASLRPTVSCPPSPGPLAKPDSINHHAGSAVAWIHGAPPPPP 166 LA+ P + PP+ A + N+ G+A + PPPPP Sbjct: 122 LATPAPFAASPPTSIANANNTNNNNALGAAGSLSSQPPPPPP 163 Score = 21.9 bits (45), Expect(2) = 4.9 Identities = 10/25 (40%), Positives = 12/25 (48%) Frame = +3 Query: 156 HHPRAAAYV**PSLLAHRPSIPPSP 230 HHP P + A PS+PP P Sbjct: 184 HHPN-------PFVAASAPSLPPPP 201
>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7| Length = 1303 Score = 24.3 bits (51), Expect(2) = 5.1 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +1 Query: 28 LGSLASQPTPYGLLPSLPRPP 90 + L P GLLP+ PRPP Sbjct: 504 INPLPKPPPGVGLLPTPPRPP 524 Score = 23.5 bits (49), Expect(2) = 5.1 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = +2 Query: 71 PPSPGPLAKPDSINHHAGSAVAWIHGAPPPPP 166 P PGP A P S N + G PPPPP Sbjct: 521 PRPPGPQA-PTSPNGRP------MQGGPPPPP 545
>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related| protein) (WIP-and CR16-homologous protein) Length = 440 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +2 Query: 50 LRPTVSCPPSPGPLAKPDS-INHHAGSAVAWIHGAPPPPPCRR 175 L P PP+P P+ P S +N G + + APPPPP R+ Sbjct: 217 LHPGREGPPAPPPVKPPPSPVNIRTGPSGQSL--APPPPPYRQ 257
>GTR1_DROME (Q8IRI6) Glucose transporter type 1| Length = 656 Score = 29.3 bits (64), Expect = 5.5 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +1 Query: 34 SLASQPTPYGLLPSLPRPPRQTRLHQP 114 S+++ P+G LP LP P R T++ QP Sbjct: 25 SISNDQDPFGQLPPLPPPLRSTQVLQP 51
>OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-blind)| (L(1)omb) (Protein bifid) Length = 972 Score = 29.3 bits (64), Expect = 5.5 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Frame = +2 Query: 71 PPSPGPLAKPDSINHHAGSAVAWIHGAPPPPPCRRLCIVAFLV-SPSSIHPSI 226 P P L P +H H APPPPP +A L SP+ HP + Sbjct: 213 PAGPTGLPPPTPPHHLQQQQQQQQHPAPPPPPYFPAAALAALAGSPAGPHPGL 265
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 24.3 bits (51), Expect(2) = 6.5 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +1 Query: 28 LGSLASQPTPYGLLPSLPRPP 90 + L P GLLP+ PRPP Sbjct: 503 INPLPKPPPGVGLLPTPPRPP 523 Score = 23.1 bits (48), Expect(2) = 6.5 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = +2 Query: 71 PPSPGPLAKPDSINHHAGSAVAWIHGAPPPPP 166 P PGP A P S N + G PPPPP Sbjct: 520 PRPPGPPA-PTSPNGRP------MQGGPPPPP 544
>TMG2_HUMAN (O14669) Transmembrane gamma-carboxyglutamic acid protein 2| precursor (Proline-rich Gla protein 2) (Proline-rich gamma-carboxyglutamic acid protein 2) Length = 202 Score = 28.9 bits (63), Expect = 7.2 Identities = 15/41 (36%), Positives = 18/41 (43%) Frame = +2 Query: 41 LASLRPTVSCPPSPGPLAKPDSINHHAGSAVAWIHGAPPPP 163 L L P PP P P P + A + +H APPPP Sbjct: 156 LNPLGPPTPLPPPPPP--PPGLPTYEQALAASGVHDAPPPP 194
>FMOD_MOUSE (P50608) Fibromodulin precursor (FM) (Collagen-binding 59 kDa| protein) (Keratan sulfate proteoglycan fibromodulin) (KSPG fibromodulin) Length = 376 Score = 28.9 bits (63), Expect = 7.2 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = +2 Query: 29 WVR*LASLRPTVSCPPSPGPLAKPDSINHHAGSAVAWIHGAPPPPPCR 172 W++ L + + T P P P + + A+ +GAPPPP R Sbjct: 27 WIQYLRNQQSTYYDPYDPYPYEPSEPYPYGVEEGPAYAYGAPPPPEPR 74
>SNM1_ARATH (Q38961) DNA cross-link repair protein SNM1 (AtSNM1)| Length = 484 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Frame = +2 Query: 110 NHHAGSAVAWIHGAPPPPPCR----RLCIVAFLVSPSSIHP 220 +H+ G AW HG P C RL ++ V+PSSIHP Sbjct: 180 DHYIGLTKAWSHG---PIYCSSLTSRLLRLSLSVNPSSIHP 217
>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2| Length = 924 Score = 28.9 bits (63), Expect = 7.2 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +2 Query: 71 PPSPGPLAKPDSINHHAGSAVAWIHGAPPPP 163 PP+P P A P S++ G AV G P PP Sbjct: 195 PPAPRPSASPSSMSPRPGGAVG--GGGPRPP 223
>SYFB_STAAU (Q9AGR3) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 800 Score = 28.5 bits (62), Expect = 9.4 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%) Frame = +2 Query: 185 VAFLVSPSSIHPSITSCLSARRFVVASY*VAR-DRMQDLFSVPSC-FSSGEKQLPD 346 + L+ S H S+ L VASY VAR ++ LF + + F++GE +LPD Sbjct: 540 IDLLMPMSEAHASLRQSLLPHLIEVASYNVARKNKDVKLFEIGNVFFANGEGELPD 595
>CD2L7_CAEEL (P46551) Putative cell division cycle 2-related protein kinase 7| (EC 2.7.11.22) Length = 730 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = +2 Query: 50 LRPTVSCPPSPGPLAKPDSINHHAGSAVAWIHGAPPPPP 166 + P PP+P + P H A +A + PPPPP Sbjct: 218 MTPPPRPPPAPFSIPPPSVDIHFAATASFSLSSIPPPPP 256
>NAS30_CAEEL (Q9N2V2) Zinc metalloproteinase nas-30 precursor (EC 3.4.24.21)| (Nematode astacin 30) Length = 746 Score = 28.5 bits (62), Expect = 9.4 Identities = 9/26 (34%), Positives = 15/26 (57%) Frame = +2 Query: 89 LAKPDSINHHAGSAVAWIHGAPPPPP 166 L+ + +++ + WI G PPPPP Sbjct: 592 LSNANIVDYEVSYKLQWIQGTPPPPP 617
>CAC1E_HUMAN (Q15878) Voltage-dependent R-type calcium channel alpha-1E subunit| (Voltage-gated calcium channel alpha subunit Cav2.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 6) (Brain calcium channel II) (BII) Length = 2312 Score = 28.5 bits (62), Expect = 9.4 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 4/78 (5%) Frame = +2 Query: 47 SLRPTVSCPPSPGPLAKPDSINHHAGSAVAWIHGAPPPPPCRRLCI----VAFLVSPSSI 214 S R PP P PL S+ HAGS G+ P + S +S Sbjct: 2154 SRRQLPPVPPKPRPLLSYSSLIRHAGSISPPADGSEEGSPLTSQALESNNACLTESSNSP 2213 Query: 215 HPSITSCLSARRFVVASY 268 HP + S +R++ Y Sbjct: 2214 HPQQSQHASPQRYISEPY 2231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,235,515 Number of Sequences: 219361 Number of extensions: 1229193 Number of successful extensions: 4854 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4244 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4790 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
