ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet68b09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK063339.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 4e-56
2gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 1... 196 4e-47
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 196 4e-47
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 196 4e-47
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 188 1e-44
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 188 1e-44
7emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb... 188 1e-44
8emb|AL928752.2|CNS08CBP Oryza sativa chromosome 12, . BAC OSJNBb... 188 1e-44
9gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 46 0.089
10gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 44 0.35
11gb|CP000316.1| Polaromonas sp. JS666, complete genome 44 0.35
12emb|Y14317.1|SRFRPS Streptomyces reticuli furS and cpeB genes 44 0.35
13gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 42 1.4
14gb|DQ330726.1| Uncultured candidate division BRC1 bacterium clon... 42 1.4
15gb|DQ330721.1| Uncultured candidate division BRC1 bacterium clon... 42 1.4
16emb|AJ579894.1|PSP579894 Pseudomonas sp. Y2 paa2 gene cluster fo... 42 1.4
17emb|AJ000330.2|PSSTYCATA Pseudomonas sp. Y2 DNA for styrene cata... 42 1.4
18gb|AE005951.1| Caulobacter crescentus CB15 section 277 of 359 of... 42 1.4
19dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 1.4
20gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 42 1.4
21gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 1.4
22emb|AL772231.8| Mouse DNA sequence from clone RP23-398O7 on chro... 42 1.4
23ref|NM_188702.1| Oryza sativa (japonica cultivar-group), predic... 40 5.5
24ref|XM_465614.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
25ref|XM_470356.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
26ref|XM_479590.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
27ref|XM_478288.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
28gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, c... 40 5.5
29gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 5.5
30ref|XM_879800.1| PREDICTED: Bos taurus hypothetical protein LOC6... 40 5.5
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.5
32ref|XM_843029.1| Leishmania major strain Friedlin hypothetical p... 40 5.5
33emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete ... 40 5.5
34emb|AJ300302.1|SGR300302 Streptomyces griseus partial ORF1, canA... 40 5.5
35dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 5.5
36gb|AE006018.1| Caulobacter crescentus CB15 section 344 of 359 of... 40 5.5
37gb|AY028422.1| Oryza sativa triose phosphate/phosphate transloca... 40 5.5
38dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.5
39gb|AC010614.8| Homo sapiens chromosome 19 clone CTD-2518G19, com... 40 5.5
40dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
41dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
42dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
43dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
44gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genom... 40 5.5
45dbj|AP003210.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
46dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
47dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
48dbj|AP004870.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
49dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.5
50dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
51dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
52dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
53dbj|AK121255.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
54dbj|AK120516.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
55dbj|AK119894.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
56dbj|AK119881.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
57dbj|AK119863.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
58dbj|AK119348.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
59dbj|AK105639.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
60dbj|AK099799.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
61dbj|AK066616.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
62dbj|AK065569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
63dbj|AP001743.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.5
64dbj|AP002955.1| Homo sapiens genomic DNA, chromosome 21q, clone:... 40 5.5
65gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.5
66gb|AF006743.1|AF006743 Caulobacter crescentus rpoN operon contai... 40 5.5
67emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.5
68emb|AL732647.4|CNS08C9M Oryza sativa chromosome 12, . BAC OSJNBb... 40 5.5
69dbj|AP001617.1| Homo sapiens genomic DNA, chromosome 21, clone:c... 40 5.5
70dbj|AP001504.1| Homo sapiens genomic DNA, chromosome 21q22.3, cl... 40 5.5 
>dbj|AK063339.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-A10, full
           insert sequence
          Length = 1190

 Score =  226 bits (114), Expect = 4e-56
 Identities = 207/238 (86%)
 Strand = Plus / Plus

                                                                       
Query: 162 gcgtggagagccagcgcctgttcctggcgcgccgcacggcgctggagatgctgcgggacc 221
           ||||||||||||| ||||||||||||||||||||||||||  |||||||||| || ||||
Sbjct: 368 gcgtggagagccaccgcctgttcctggcgcgccgcacggcaatggagatgctccgcgacc 427

                                                                       
Query: 222 gcgggtacagcgtgccggaggacgagctcgcccgcaccctcccggagttccgcgcgtggt 281
           ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||
Sbjct: 428 gcgggtacagcgtgccggaggccgagatcgcccgcaccctccctgagttccgcgcatggt 487

                                                                       
Query: 282 ggtccgagacacccgagatcgagcgcctctccttttccacaaccctcgcctccgacccgt 341
           || | ||||  || | |||||| |||||| ||||  |||| ||||||| ||||||||| |
Sbjct: 488 gggctgagaagcctgggatcgaacgcctcgccttcaccaccaccctcgtctccgacccct 547

                                                                     
Query: 342 ccagcaaggtgcgaattgtattctgcccacctgagcccgtcaaaatcgcagctatccg 399
           |||  ||||| | | |||||||||| ||||| ||||| |||||||||||| |||||||
Sbjct: 548 ccaagaaggtacaacttgtattctgtccaccagagcctgtcaaaatcgcaactatccg 605
to top
>gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06,
             complete sequence
          Length = 185449

 Score =  196 bits (99), Expect = 4e-47
 Identities = 162/183 (88%)
 Strand = Plus / Minus

                                                                         
Query: 162   gcgtggagagccagcgcctgttcctggcgcgccgcacggcgctggagatgctgcgggacc 221
             ||||||||||||| |||||||||||||||||||| |||||| |||||||||| || ||||
Sbjct: 72063 gcgtggagagccaccgcctgttcctggcgcgccggacggcgatggagatgctccgcgacc 72004

                                                                         
Query: 222   gcgggtacagcgtgccggaggacgagctcgcccgcaccctcccggagttccgcgcgtggt 281
             ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||
Sbjct: 72003 gcgggtacagcgtgccggaggccgagatcgcccgcaccctccctgagttccgcgcctggt 71944

                                                                         
Query: 282   ggtccgagacacccgagatcgagcgcctctccttttccacaaccctcgcctccgacccgt 341
             || | ||||  |||| |||||| |||||| ||||  |||| ||||||| ||||||||| |
Sbjct: 71943 gggctgagaagcccgggatcgaacgcctcgccttcaccaccaccctcgtctccgacccct 71884

                
Query: 342   cca 344
             |||
Sbjct: 71883 cca 71881



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                        
Query: 357   ttgtattctgcccacctgagcccgtcaaaatcgcagctatccg 399
             |||||||||| ||||| ||||| |||||||||||| |||||||
Sbjct: 71124 ttgtattctgtccaccagagcctgtcaaaatcgcaactatccg 71082
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  196 bits (99), Expect = 4e-47
 Identities = 162/183 (88%)
 Strand = Plus / Minus

                                                                           
Query: 162     gcgtggagagccagcgcctgttcctggcgcgccgcacggcgctggagatgctgcgggacc 221
               ||||||||||||| |||||||||||||||||||| |||||| |||||||||| || ||||
Sbjct: 2000508 gcgtggagagccaccgcctgttcctggcgcgccggacggcgatggagatgctccgcgacc 2000449

                                                                           
Query: 222     gcgggtacagcgtgccggaggacgagctcgcccgcaccctcccggagttccgcgcgtggt 281
               ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||
Sbjct: 2000448 gcgggtacagcgtgccggaggccgagatcgcccgcaccctccctgagttccgcgcctggt 2000389

                                                                           
Query: 282     ggtccgagacacccgagatcgagcgcctctccttttccacaaccctcgcctccgacccgt 341
               || | ||||  |||| |||||| |||||| ||||  |||| ||||||| ||||||||| |
Sbjct: 2000388 gggctgagaagcccgggatcgaacgcctcgccttcaccaccaccctcgtctccgacccct 2000329

                  
Query: 342     cca 344
               |||
Sbjct: 2000328 cca 2000326



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                          
Query: 357     ttgtattctgcccacctgagcccgtcaaaatcgcagctatccg 399
               |||||||||| ||||| ||||| |||||||||||| |||||||
Sbjct: 1999569 ttgtattctgtccaccagagcctgtcaaaatcgcaactatccg 1999527
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  196 bits (99), Expect = 4e-47
 Identities = 162/183 (88%)
 Strand = Plus / Minus

                                                                           
Query: 162     gcgtggagagccagcgcctgttcctggcgcgccgcacggcgctggagatgctgcgggacc 221
               ||||||||||||| |||||||||||||||||||| |||||| |||||||||| || ||||
Sbjct: 2008289 gcgtggagagccaccgcctgttcctggcgcgccggacggcgatggagatgctccgcgacc 2008230

                                                                           
Query: 222     gcgggtacagcgtgccggaggacgagctcgcccgcaccctcccggagttccgcgcgtggt 281
               ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||
Sbjct: 2008229 gcgggtacagcgtgccggaggccgagatcgcccgcaccctccctgagttccgcgcctggt 2008170

                                                                           
Query: 282     ggtccgagacacccgagatcgagcgcctctccttttccacaaccctcgcctccgacccgt 341
               || | ||||  |||| |||||| |||||| ||||  |||| ||||||| ||||||||| |
Sbjct: 2008169 gggctgagaagcccgggatcgaacgcctcgccttcaccaccaccctcgtctccgacccct 2008110

                  
Query: 342     cca 344
               |||
Sbjct: 2008109 cca 2008107



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                          
Query: 357     ttgtattctgcccacctgagcccgtcaaaatcgcagctatccg 399
               |||||||||| ||||| ||||| |||||||||||| |||||||
Sbjct: 2007350 ttgtattctgtccaccagagcctgtcaaaatcgcaactatccg 2007308
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  188 bits (95), Expect = 1e-44
 Identities = 161/183 (87%)
 Strand = Plus / Minus

                                                                           
Query: 162     gcgtggagagccagcgcctgttcctggcgcgccgcacggcgctggagatgctgcgggacc 221
               ||||||||||||| ||||||||||||||||||||||||||  |||||||||| || ||||
Sbjct: 1919262 gcgtggagagccaccgcctgttcctggcgcgccgcacggcaatggagatgctccgcgacc 1919203

                                                                           
Query: 222     gcgggtacagcgtgccggaggacgagctcgcccgcaccctcccggagttccgcgcgtggt 281
               ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||
Sbjct: 1919202 gcgggtacagcgtgccggaggccgagatcgcccgcaccctccctgagttccgcgcatggt 1919143

                                                                           
Query: 282     ggtccgagacacccgagatcgagcgcctctccttttccacaaccctcgcctccgacccgt 341
               || | ||||  || | |||||| |||||| ||||  |||| ||||||| ||||||||| |
Sbjct: 1919142 gggctgagaagcctgggatcgaacgcctcgccttcaccaccaccctcgtctccgacccct 1919083

                  
Query: 342     cca 344
               |||
Sbjct: 1919082 cca 1919080



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                          
Query: 357     ttgtattctgcccacctgagcccgtcaaaatcgcagctatccg 399
               |||||||||| ||||| ||||| |||||||||||| |||||||
Sbjct: 1918324 ttgtattctgtccaccagagcctgtcaaaatcgcaactatccg 1918282



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 142      cgacctcggcggcgccgccg 161
                ||||||||||||||||||||
Sbjct: 21903895 cgacctcggcggcgccgccg 21903876
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  188 bits (95), Expect = 1e-44
 Identities = 161/183 (87%)
 Strand = Plus / Minus

                                                                           
Query: 162     gcgtggagagccagcgcctgttcctggcgcgccgcacggcgctggagatgctgcgggacc 221
               ||||||||||||| ||||||||||||||||||||||||||  |||||||||| || ||||
Sbjct: 1919213 gcgtggagagccaccgcctgttcctggcgcgccgcacggcaatggagatgctccgcgacc 1919154

                                                                           
Query: 222     gcgggtacagcgtgccggaggacgagctcgcccgcaccctcccggagttccgcgcgtggt 281
               ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||
Sbjct: 1919153 gcgggtacagcgtgccggaggccgagatcgcccgcaccctccctgagttccgcgcatggt 1919094

                                                                           
Query: 282     ggtccgagacacccgagatcgagcgcctctccttttccacaaccctcgcctccgacccgt 341
               || | ||||  || | |||||| |||||| ||||  |||| ||||||| ||||||||| |
Sbjct: 1919093 gggctgagaagcctgggatcgaacgcctcgccttcaccaccaccctcgtctccgacccct 1919034

                  
Query: 342     cca 344
               |||
Sbjct: 1919033 cca 1919031



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                          
Query: 357     ttgtattctgcccacctgagcccgtcaaaatcgcagctatccg 399
               |||||||||| ||||| ||||| |||||||||||| |||||||
Sbjct: 1918275 ttgtattctgtccaccagagcctgtcaaaatcgcaactatccg 1918233



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 142      cgacctcggcggcgccgccg 161
                ||||||||||||||||||||
Sbjct: 21832240 cgacctcggcggcgccgccg 21832221
to top
>emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 128619

 Score =  188 bits (95), Expect = 1e-44
 Identities = 161/183 (87%)
 Strand = Plus / Minus

                                                                          
Query: 162    gcgtggagagccagcgcctgttcctggcgcgccgcacggcgctggagatgctgcgggacc 221
              ||||||||||||| ||||||||||||||||||||||||||  |||||||||| || ||||
Sbjct: 113953 gcgtggagagccaccgcctgttcctggcgcgccgcacggcaatggagatgctccgcgacc 113894

                                                                          
Query: 222    gcgggtacagcgtgccggaggacgagctcgcccgcaccctcccggagttccgcgcgtggt 281
              ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||
Sbjct: 113893 gcgggtacagcgtgccggaggccgagatcgcccgcaccctccctgagttccgcgcatggt 113834

                                                                          
Query: 282    ggtccgagacacccgagatcgagcgcctctccttttccacaaccctcgcctccgacccgt 341
              || | ||||  || | |||||| |||||| ||||  |||| ||||||| ||||||||| |
Sbjct: 113833 gggctgagaagcctgggatcgaacgcctcgccttcaccaccaccctcgtctccgacccct 113774

                 
Query: 342    cca 344
              |||
Sbjct: 113773 cca 113771



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 357    ttgtattctgcccacctgagcccgtcaaaatcgcagctatccg 399
              |||||||||| ||||| ||||| |||||||||||| |||||||
Sbjct: 113015 ttgtattctgtccaccagagcctgtcaaaatcgcaactatccg 112973
to top
>emb|AL928752.2|CNS08CBP Oryza sativa chromosome 12, . BAC OSJNBb0034E23 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 107247

 Score =  188 bits (95), Expect = 1e-44
 Identities = 161/183 (87%)
 Strand = Plus / Plus

                                                                         
Query: 162   gcgtggagagccagcgcctgttcctggcgcgccgcacggcgctggagatgctgcgggacc 221
             ||||||||||||| ||||||||||||||||||||||||||  |||||||||| || ||||
Sbjct: 48959 gcgtggagagccaccgcctgttcctggcgcgccgcacggcaatggagatgctccgcgacc 49018

                                                                         
Query: 222   gcgggtacagcgtgccggaggacgagctcgcccgcaccctcccggagttccgcgcgtggt 281
             ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||
Sbjct: 49019 gcgggtacagcgtgccggaggccgagatcgcccgcaccctccctgagttccgcgcatggt 49078

                                                                         
Query: 282   ggtccgagacacccgagatcgagcgcctctccttttccacaaccctcgcctccgacccgt 341
             || | ||||  || | |||||| |||||| ||||  |||| ||||||| ||||||||| |
Sbjct: 49079 gggctgagaagcctgggatcgaacgcctcgccttcaccaccaccctcgtctccgacccct 49138

                
Query: 342   cca 344
             |||
Sbjct: 49139 cca 49141



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 357   ttgtattctgcccacctgagcccgtcaaaatcgcagctatccg 399
             |||||||||| ||||| ||||| |||||||||||| |||||||
Sbjct: 49897 ttgtattctgtccaccagagcctgtcaaaatcgcaactatccg 49939
to top
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 173    cagcgcctgttcctggcgcgccg 195
              |||||||||||||||||||||||
Sbjct: 105394 cagcgcctgttcctggcgcgccg 105372
to top
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 85      cgcggcaatggccatcgacaacgccc 110
               |||||| |||||||||||||||||||
Sbjct: 2047175 cgcggcgatggccatcgacaacgccc 2047150
to top
>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 142     cgacctcggcggcgccgccggc 163
               ||||||||||||||||||||||
Sbjct: 1458339 cgacctcggcggcgccgccggc 1458318
to top
>emb|Y14317.1|SRFRPS Streptomyces reticuli furS and cpeB genes
          Length = 2904

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 145  cctcggcggcgccgccggcgtggaga 170
            ||||||||| ||||||||||||||||
Sbjct: 2198 cctcggcggtgccgccggcgtggaga 2223
to top
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 100     cgacaacgcccccgaggtcgc 120
               |||||||||||||||||||||
Sbjct: 3114929 cgacaacgcccccgaggtcgc 3114909
to top
>gb|DQ330726.1| Uncultured candidate division BRC1 bacterium clone 09D2Y74 16S
           ribosomal RNA gene, partial sequence
          Length = 1391

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 232 cgtgccggaggacgagctcgc 252
           |||||||||||||||||||||
Sbjct: 216 cgtgccggaggacgagctcgc 236
to top
>gb|DQ330721.1| Uncultured candidate division BRC1 bacterium clone 08D2Z83 16S
           ribosomal RNA gene, partial sequence
          Length = 1391

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 232 cgtgccggaggacgagctcgc 252
           |||||||||||||||||||||
Sbjct: 216 cgtgccggaggacgagctcgc 236
to top
>emb|AJ579894.1|PSP579894 Pseudomonas sp. Y2 paa2 gene cluster for phenylacetate degradation
          Length = 21562

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 79    cgcccacgcggcaatggccatcgacaacgcccccgag 115
             |||| ||||||| ||||||||||| ||||||| ||||
Sbjct: 11917 cgccgacgcggcgatggccatcgagaacgcccgcgag 11953
to top
>emb|AJ000330.2|PSSTYCATA Pseudomonas sp. Y2 DNA for styrene catabolism genes
          Length = 29685

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 79    cgcccacgcggcaatggccatcgacaacgcccccgag 115
             |||| |||| || ||||||||||||||||||| ||||
Sbjct: 22791 cgccgacgccgccatggccatcgacaacgcccgcgag 22827
to top
>gb|AE005951.1| Caulobacter crescentus CB15 section 277 of 359 of the complete genome
          Length = 10783

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 147  tcggcggcgccgccggcgtgg 167
            |||||||||||||||||||||
Sbjct: 7826 tcggcggcgccgccggcgtgg 7806
to top
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 240     aggacgagctcgcccgcaccctccc 264
               |||||||||||||||||| ||||||
Sbjct: 1274166 aggacgagctcgcccgcaacctccc 1274190
to top
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 239     gaggacgagctcgcccgcacc 259
               |||||||||||||||||||||
Sbjct: 4714776 gaggacgagctcgcccgcacc 4714796
to top
>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 240    aggacgagctcgcccgcaccctccc 264
              |||||||||||||||||| ||||||
Sbjct: 951343 aggacgagctcgcccgcaacctccc 951367
to top
>emb|AL772231.8| Mouse DNA sequence from clone RP23-398O7 on chromosome 4, complete
              sequence
          Length = 153653

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1      aaggaaagaaatgaatcaatt 21
              |||||||||||||||||||||
Sbjct: 139465 aaggaaagaaatgaatcaatt 139445
to top
>ref|NM_188702.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 cggcggcgccgccggcgtgg 167
           ||||||||||||||||||||
Sbjct: 24  cggcggcgccgccggcgtgg 43
to top
>ref|XM_465614.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2555

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 145  cctcggcggcgccgccggcg 164
            ||||||||||||||||||||
Sbjct: 1804 cctcggcggcgccgccggcg 1785
to top
>ref|XM_470356.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3105

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  cctcggcggcgccgccggcg 164
            ||||||||||||||||||||
Sbjct: 2641 cctcggcggcgccgccggcg 2660
to top
>ref|XM_479590.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2337

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 148  cggcggcgccgccggcgtgg 167
            ||||||||||||||||||||
Sbjct: 1242 cggcggcgccgccggcgtgg 1261
to top
>ref|XM_478288.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1065

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 145 cctcggcggcgccgccggcg 164
           ||||||||||||||||||||
Sbjct: 309 cctcggcggcgccgccggcg 290
to top
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence
          Length = 1130447

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    gtacagcgtgccggaggacg 245
              ||||||||||||||||||||
Sbjct: 681008 gtacagcgtgccggaggacg 681027
to top
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 141     tcgacctcggcggcgccgccggcg 164
               ||||||||||||||| ||||||||
Sbjct: 1305396 tcgacctcggcggcgacgccggcg 1305419
to top
>ref|XM_879800.1| PREDICTED: Bos taurus hypothetical protein LOC615402 (LOC615402),
           mRNA
          Length = 1431

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 143 gacctcggcggcgccgccgg 162
           ||||||||||||||||||||
Sbjct: 593 gacctcggcggcgccgccgg 574
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 145      cctcggcggcgccgccggcg 164
                ||||||||||||||||||||
Sbjct: 34916077 cctcggcggcgccgccggcg 34916058
to top
>ref|XM_843029.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0425)
            partial mRNA
          Length = 3873

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 226  gtacagcgtgccggaggacg 245
            ||||||||||||||||||||
Sbjct: 2841 gtacagcgtgccggaggacg 2860
to top
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29
          Length = 299050

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   gctcgcccgcaccctcccgg 266
             ||||||||||||||||||||
Sbjct: 12006 gctcgcccgcaccctcccgg 11987
to top
>emb|AJ300302.1|SGR300302 Streptomyces griseus partial ORF1, canA gene, canC gene, canF gene,
             canT gene, canRA gene and canRB gene
          Length = 39314

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 148   cggcggcgccgccggcgtggagag 171
             ||||||||||| ||||||||||||
Sbjct: 36274 cggcggcgccgacggcgtggagag 36297
to top
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 118     cgccggctgcatatcgtcca 137
               ||||||||||||||||||||
Sbjct: 1143027 cgccggctgcatatcgtcca 1143008
to top
>gb|AE006018.1| Caulobacter crescentus CB15 section 344 of 359 of the complete genome
          Length = 10978

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  cgacctcggcggcgccgccg 161
            ||||||||||||||||||||
Sbjct: 1725 cgacctcggcggcgccgccg 1744
to top
>gb|AY028422.1| Oryza sativa triose phosphate/phosphate translocator mRNA, complete
           cds
          Length = 1541

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 cggcggcgccgccggcgtgg 167
           ||||||||||||||||||||
Sbjct: 24  cggcggcgccgccggcgtgg 43
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    acggcgctggagatgctgcg 216
              ||||||||||||||||||||
Sbjct: 817843 acggcgctggagatgctgcg 817862
to top
>gb|AC010614.8| Homo sapiens chromosome 19 clone CTD-2518G19, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 385    aatcgcagctatccgggagg 404
              ||||||||||||||||||||
Sbjct: 111440 aatcgcagctatccgggagg 111459
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 148      cggcggcgccgccggcgtgg 167
                ||||||||||||||||||||
Sbjct: 29077974 cggcggcgccgccggcgtgg 29077993



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 145      cctcggcggcgccgccggcg 164
                ||||||||||||||||||||
Sbjct: 19015039 cctcggcggcgccgccggcg 19015020
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 145      cctcggcggcgccgccggcg 164
                ||||||||||||||||||||
Sbjct: 35006149 cctcggcggcgccgccggcg 35006130
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 145      cctcggcggcgccgccggcg 164
                ||||||||||||||||||||
Sbjct: 16363520 cctcggcggcgccgccggcg 16363501
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 148     cggcggcgccgccggcgtgg 167
               ||||||||||||||||||||
Sbjct: 7721165 cggcggcgccgccggcgtgg 7721146



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 140     gtcgacctcggcggcgccgccggcgtgg 167
               |||| ||||||||||||||||| |||||
Sbjct: 7518897 gtcgtcctcggcggcgccgccgtcgtgg 7518870
to top
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete
             sequence
          Length = 171376

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   cctcggcggcgccgccggcg 164
             ||||||||||||||||||||
Sbjct: 99403 cctcggcggcgccgccggcg 99422
to top
>dbj|AP003210.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0010K01
          Length = 144404

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   cggcggcgccgccggcgtgg 167
             ||||||||||||||||||||
Sbjct: 23746 cggcggcgccgccggcgtgg 23727
to top
>dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0086P08
          Length = 145312

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    cggcggcgccgccggcgtgg 167
              ||||||||||||||||||||
Sbjct: 131741 cggcggcgccgccggcgtgg 131722
to top
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0708G02
          Length = 168976

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 140   gtcgacctcggcggcgccgccggcgtgg 167
             |||| ||||||||||||||||| |||||
Sbjct: 67689 gtcgtcctcggcggcgccgccgtcgtgg 67662
to top
>dbj|AP004870.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419C03
          Length = 146929

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   cctcggcggcgccgccggcg 164
             ||||||||||||||||||||
Sbjct: 49186 cctcggcggcgccgccggcg 49167
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 234     tgccggaggacgagctcgcc 253
               ||||||||||||||||||||
Sbjct: 8159437 tgccggaggacgagctcgcc 8159456
to top
>dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0430F03
          Length = 183095

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    cctcggcggcgccgccggcg 164
              ||||||||||||||||||||
Sbjct: 117024 cctcggcggcgccgccggcg 117005
to top
>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1150_E04
          Length = 130973

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   cggcggcgccgccggcgtgg 167
             ||||||||||||||||||||
Sbjct: 13092 cggcggcgccgccggcgtgg 13111
to top
>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1200_C08
          Length = 106214

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   cggcggcgccgccggcgtgg 167
             ||||||||||||||||||||
Sbjct: 25931 cggcggcgccgccggcgtgg 25950
to top
>dbj|AK121255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102B22, full
           insert sequence
          Length = 1653

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 145 cctcggcggcgccgccggcg 164
           ||||||||||||||||||||
Sbjct: 555 cctcggcggcgccgccggcg 536
to top
>dbj|AK120516.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124C02, full
            insert sequence
          Length = 2556

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 145  cctcggcggcgccgccggcg 164
            ||||||||||||||||||||
Sbjct: 1805 cctcggcggcgccgccggcg 1786
to top
>dbj|AK119894.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-B12, full
            insert sequence
          Length = 3179

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  cctcggcggcgccgccggcg 164
            ||||||||||||||||||||
Sbjct: 2842 cctcggcggcgccgccggcg 2861
to top
>dbj|AK119881.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-G09, full
            insert sequence
          Length = 3080

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  cctcggcggcgccgccggcg 164
            ||||||||||||||||||||
Sbjct: 2617 cctcggcggcgccgccggcg 2636
to top
>dbj|AK119863.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-178-H10, full
            insert sequence
          Length = 3128

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  cctcggcggcgccgccggcg 164
            ||||||||||||||||||||
Sbjct: 2643 cctcggcggcgccgccggcg 2662
to top
>dbj|AK119348.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-E09, full
            insert sequence
          Length = 2601

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 148  cggcggcgccgccggcgtgg 167
            ||||||||||||||||||||
Sbjct: 1280 cggcggcgccgccggcgtgg 1299
to top
>dbj|AK105639.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-E04, full
            insert sequence
          Length = 2027

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 145  cctcggcggcgccgccggcg 164
            ||||||||||||||||||||
Sbjct: 1443 cctcggcggcgccgccggcg 1424
to top
>dbj|AK099799.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097M22, full
           insert sequence
          Length = 1605

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 cggcggcgccgccggcgtgg 167
           ||||||||||||||||||||
Sbjct: 56  cggcggcgccgccggcgtgg 75
to top
>dbj|AK066616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074M03, full
            insert sequence
          Length = 3051

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  cctcggcggcgccgccggcg 164
            ||||||||||||||||||||
Sbjct: 2618 cctcggcggcgccgccggcg 2637
to top
>dbj|AK065569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026L08, full
           insert sequence
          Length = 1217

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 140 gtcgacctcggcggcgccgccggcgtgg 167
           |||| ||||||||||||||||| |||||
Sbjct: 282 gtcgtcctcggcggcgccgccgtcgtgg 255
to top
>dbj|AP001743.1| Homo sapiens genomic DNA, chromosome 21q, section 87/105
          Length = 219256

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 385    aatcgcagctatccgggagg 404
              ||||||||||||||||||||
Sbjct: 200818 aatcgcagctatccgggagg 200837
to top
>dbj|AP002955.1| Homo sapiens genomic DNA, chromosome 21q, clone:CMF21-129C10, complete
             sequence
          Length = 43147

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   aatcgcagctatccgggagg 404
             ||||||||||||||||||||
Sbjct: 14396 aatcgcagctatccgggagg 14415
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 148     cggcggcgccgccggcgtgg 167
               ||||||||||||||||||||
Sbjct: 3924864 cggcggcgccgccggcgtgg 3924883
to top
>gb|AF006743.1|AF006743 Caulobacter crescentus rpoN operon containing: sigma factor 54
            (rpoN), ORF203, ORF208, and ORF159 genes, complete cds
          Length = 3798

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 142  cgacctcggcggcgccgccg 161
            ||||||||||||||||||||
Sbjct: 2656 cgacctcggcggcgccgccg 2637
to top
>emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa0062E22 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 138308

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   cgacctcggcggcgccgccg 161
             ||||||||||||||||||||
Sbjct: 10023 cgacctcggcggcgccgccg 10004
to top
>emb|AL732647.4|CNS08C9M Oryza sativa chromosome 12, . BAC OSJNBb0087J18 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 121592

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   cgacctcggcggcgccgccg 161
             ||||||||||||||||||||
Sbjct: 19437 cgacctcggcggcgccgccg 19456
to top
>dbj|AP001617.1| Homo sapiens genomic DNA, chromosome 21, clone:c103J2129, MX1-D21S171
            region, complete sequence
          Length = 8216

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 385  aatcgcagctatccgggagg 404
            ||||||||||||||||||||
Sbjct: 4430 aatcgcagctatccgggagg 4449
to top
>dbj|AP001504.1| Homo sapiens genomic DNA, chromosome 21q22.3, clone:21B51N24,
            MX1-D21S171 region, complete sequence
          Length = 23599

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 385  aatcgcagctatccgggagg 404
            ||||||||||||||||||||
Sbjct: 5161 aatcgcagctatccgggagg 5180


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,735,696
Number of Sequences: 3902068
Number of extensions: 2735696
Number of successful extensions: 60347
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58648
Number of HSP's gapped (non-prelim): 1699
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top