Clone Information

BLAST Search Result

Clone Name	baet67h07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_473882.1\| Oryza sativa (japonica cultivar-group), predic...	359	5e-96
2	emb\|AL662950.2\|OSJN00152 Oryza sativa genomic DNA, chromosome 4,...	359	5e-96
3	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	359	5e-96
4	dbj\|AK064014.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	359	5e-96
5	gb\|AY104333.1\| Zea mays PCO102651 mRNA sequence	347	2e-92
6	gb\|AY108385.1\| Zea mays PCO111603 mRNA sequence	129	8e-27
7	ref\|XM_482325.1\| Oryza sativa (japonica cultivar-group), mRNA	113	5e-22
8	ref\|XM_507227.1\| PREDICTED Oryza sativa (japonica cultivar-group...	113	5e-22
9	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	113	5e-22
10	dbj\|AK120820.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	113	5e-22
11	dbj\|AP004691.2\| Oryza sativa (japonica cultivar-group) genomic D...	113	5e-22
12	dbj\|AK067656.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	113	5e-22
13	dbj\|AK067568.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	113	5e-22
14	dbj\|AK099113.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	105	1e-19
15	gb\|BT014552.1\| Lycopersicon esculentum clone 133974R, mRNA sequence	84	4e-13
16	gb\|BT013672.1\| Lycopersicon esculentum clone 132491F, mRNA sequence	64	4e-07
17	gb\|AC149576.3\| Medicago truncatula chromosome 2 BAC clone mte1-1...	56	1e-04
18	gb\|AC147481.3\| Medicago truncatula chromosome 2 BAC clone mth2-1...	56	1e-04
19	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	50	0.006
20	ref\|NM_112131.3\| Arabidopsis thaliana unknown protein AT3G12950 ...	46	0.094
21	gb\|BT015744.1\| Arabidopsis thaliana At3g12950 mRNA, complete cds	46	0.094
22	gb\|BT012224.1\| Arabidopsis thaliana At3g12950 gene, complete cds	46	0.094
23	dbj\|AB026645.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	46	0.094
24	gb\|AC103360.9\| Mus musculus chromosome 8, clone RP24-414A22, com...	44	0.37
25	gb\|AC006267.1\| Arabidopsis thaliana BAC F9M13 from chromosome IV...	40	5.8
26	emb\|CR543861.1\| Acinetobacter sp. ADP1 complete genome	40	5.8
27	emb\|AL161510.2\|ATCHRIV22 Arabidopsis thaliana DNA chromosome 4, ...	40	5.8
28	emb\|AL138640.1\|ATT12K4 Arabidopsis thaliana DNA chromosome 3, BA...	40	5.8
29	emb\|AL132909.1\|ATT14K23 Arabidopsis thaliana DNA chromosome 3, B...	40	5.8
30	gb\|AC104690.2\| Homo sapiens BAC clone RP11-183P23 from 4, comple...	40	5.8
31	dbj\|AK169946.1\| Mus musculus NOD-derived CD11c +ve dendritic cel...	40	5.8
32	gb\|AC027036.12\|AC027036 Arabidopsis thaliana chromosome 1 BAC T4...	40	5.8
33	dbj\|AK028412.1\| Mus musculus 15 days embryo head cDNA, RIKEN ful...	40	5.8
34	dbj\|AK043699.1\| Mus musculus 10 days neonate cortex cDNA, RIKEN ...	40	5.8
35	gb\|AF262043.1\|T26D3 Arabidopsis thaliana BAC T26D3	40	5.8
36	gb\|AF262039.1\|F24J2 Arabidopsis thaliana BAC F24J2	40	5.8
37	gb\|AC009317.4\|AC009317 Genomic sequence for Arabidopsis thaliana...	40	5.8
38	dbj\|AP002043.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	40	5.8
39	gb\|AC018660.1\|AC018660 Genomic Sequence For Arabidopsis thaliana...	40	5.8
40	gb\|AC161465.3\| Gallus gallus BAC clone CH261-97D4 from chromosom...	40	5.8
41	emb\|AL773523.4\| Mouse DNA sequence from clone RP23-186B18 on chr...	40	5.8
42	gb\|AC134027.2\| Homo sapiens 3 BAC RP11-358B24 (Roswell Park Canc...	40	5.8

>ref|XM_473882.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1767

 Score =  359 bits (181), Expect = 5e-96
 Identities = 283/317 (89%)
 Strand = Plus / Plus

                                                                        
Query: 2    ggcagaagttccggtcacacaactgggactgtgatggcatatgcccttgagtacaatgat 61
            |||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 1018 ggcagaagctctggtcacacaactgggactgtgatggcctatgcccttgagtacaatgac 1077

                                                                        
Query: 62   gagaaaggaatatgcttcttcactgacctcctcgttgttggtgagaatcgccaaacattt 121
            ||||||||||||||||||||||| ||| |||| |||||||||||||| ||||||||||||
Sbjct: 1078 gagaaaggaatatgcttcttcacagacatccttgttgttggtgagaaccgccaaacattt 1137

                                                                        
Query: 122  gatttggagggtgacagcggaagccttattatcctgaccagccaggatggggagaagcca 181
            |||||||| ||||| ||||||||||||||||||||||| ||||| ||||| |||||||| 
Sbjct: 1138 gatttggaaggtgatagcggaagccttattatcctgactagccaagatggtgagaagccg 1197

                                                                        
Query: 182  cgtcctattgggataatatggggtggcacagcaaaccgtgggaggataaagctcacaagt 241
            ||||| ||||| || |||||||||||||||||||| ||||||||| | ||||| ||||||
Sbjct: 1198 cgtccaattggaattatatggggtggcacagcaaatcgtgggaggttgaagcttacaagt 1257

                                                                        
Query: 242  ggctatggtcctgaaaactggactacaggggttgatcttggccgccttcttgatcgccta 301
            |   |||| ||||||||||||||||  ||||||||||||||||| || || || || || 
Sbjct: 1258 gatcatggccctgaaaactggactagtggggttgatcttggccgtctactcgaccgtctg 1317

                             
Query: 302  gaacttgatcttatcat 318
            ||||||||| |||||||
Sbjct: 1318 gaacttgatattatcat 1334

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>emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008M17,
             complete sequence
          Length = 133279

 Score =  359 bits (181), Expect = 5e-96
 Identities = 283/317 (89%)
 Strand = Plus / Plus

                                                                         
Query: 2     ggcagaagttccggtcacacaactgggactgtgatggcatatgcccttgagtacaatgat 61
             |||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 68979 ggcagaagctctggtcacacaactgggactgtgatggcctatgcccttgagtacaatgac 69038

                                                                         
Query: 62    gagaaaggaatatgcttcttcactgacctcctcgttgttggtgagaatcgccaaacattt 121
             ||||||||||||||||||||||| ||| |||| |||||||||||||| ||||||||||||
Sbjct: 69039 gagaaaggaatatgcttcttcacagacatccttgttgttggtgagaaccgccaaacattt 69098

                                                                         
Query: 122   gatttggagggtgacagcggaagccttattatcctgaccagccaggatggggagaagcca 181
             |||||||| ||||| ||||||||||||||||||||||| ||||| ||||| |||||||| 
Sbjct: 69099 gatttggaaggtgatagcggaagccttattatcctgactagccaagatggtgagaagccg 69158

                                                                         
Query: 182   cgtcctattgggataatatggggtggcacagcaaaccgtgggaggataaagctcacaagt 241
             ||||| ||||| || |||||||||||||||||||| ||||||||| | ||||| ||||||
Sbjct: 69159 cgtccaattggaattatatggggtggcacagcaaatcgtgggaggttgaagcttacaagt 69218

                                                                         
Query: 242   ggctatggtcctgaaaactggactacaggggttgatcttggccgccttcttgatcgccta 301
             |   |||| ||||||||||||||||  ||||||||||||||||| || || || || || 
Sbjct: 69219 gatcatggccctgaaaactggactagtggggttgatcttggccgtctactcgaccgtctg 69278

                              
Query: 302   gaacttgatcttatcat 318
             ||||||||| |||||||
Sbjct: 69279 gaacttgatattatcat 69295

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  359 bits (181), Expect = 5e-96
 Identities = 283/317 (89%)
 Strand = Plus / Plus

                                                                            
Query: 2        ggcagaagttccggtcacacaactgggactgtgatggcatatgcccttgagtacaatgat 61
                |||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 31247377 ggcagaagctctggtcacacaactgggactgtgatggcctatgcccttgagtacaatgac 31247436

                                                                            
Query: 62       gagaaaggaatatgcttcttcactgacctcctcgttgttggtgagaatcgccaaacattt 121
                ||||||||||||||||||||||| ||| |||| |||||||||||||| ||||||||||||
Sbjct: 31247437 gagaaaggaatatgcttcttcacagacatccttgttgttggtgagaaccgccaaacattt 31247496

                                                                            
Query: 122      gatttggagggtgacagcggaagccttattatcctgaccagccaggatggggagaagcca 181
                |||||||| ||||| ||||||||||||||||||||||| ||||| ||||| |||||||| 
Sbjct: 31247497 gatttggaaggtgatagcggaagccttattatcctgactagccaagatggtgagaagccg 31247556

                                                                            
Query: 182      cgtcctattgggataatatggggtggcacagcaaaccgtgggaggataaagctcacaagt 241
                ||||| ||||| || |||||||||||||||||||| ||||||||| | ||||| ||||||
Sbjct: 31247557 cgtccaattggaattatatggggtggcacagcaaatcgtgggaggttgaagcttacaagt 31247616

                                                                            
Query: 242      ggctatggtcctgaaaactggactacaggggttgatcttggccgccttcttgatcgccta 301
                |   |||| ||||||||||||||||  ||||||||||||||||| || || || || || 
Sbjct: 31247617 gatcatggccctgaaaactggactagtggggttgatcttggccgtctactcgaccgtctg 31247676

                                 
Query: 302      gaacttgatcttatcat 318
                ||||||||| |||||||
Sbjct: 31247677 gaacttgatattatcat 31247693

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>dbj|AK064014.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H04, full
            insert sequence
          Length = 2575

 Score =  359 bits (181), Expect = 5e-96
 Identities = 283/317 (89%)
 Strand = Plus / Plus

                                                                        
Query: 2    ggcagaagttccggtcacacaactgggactgtgatggcatatgcccttgagtacaatgat 61
            |||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 1294 ggcagaagctctggtcacacaactgggactgtgatggcctatgcccttgagtacaatgac 1353

                                                                        
Query: 62   gagaaaggaatatgcttcttcactgacctcctcgttgttggtgagaatcgccaaacattt 121
            ||||||||||||||||||||||| ||| |||| |||||||||||||| ||||||||||||
Sbjct: 1354 gagaaaggaatatgcttcttcacagacatccttgttgttggtgagaaccgccaaacattt 1413

                                                                        
Query: 122  gatttggagggtgacagcggaagccttattatcctgaccagccaggatggggagaagcca 181
            |||||||| ||||| ||||||||||||||||||||||| ||||| ||||| |||||||| 
Sbjct: 1414 gatttggaaggtgatagcggaagccttattatcctgactagccaagatggtgagaagccg 1473

                                                                        
Query: 182  cgtcctattgggataatatggggtggcacagcaaaccgtgggaggataaagctcacaagt 241
            ||||| ||||| || |||||||||||||||||||| ||||||||| | ||||| ||||||
Sbjct: 1474 cgtccaattggaattatatggggtggcacagcaaatcgtgggaggttgaagcttacaagt 1533

                                                                        
Query: 242  ggctatggtcctgaaaactggactacaggggttgatcttggccgccttcttgatcgccta 301
            |   |||| ||||||||||||||||  ||||||||||||||||| || || || || || 
Sbjct: 1534 gatcatggccctgaaaactggactagtggggttgatcttggccgtctactcgaccgtctg 1593

                             
Query: 302  gaacttgatcttatcat 318
            ||||||||| |||||||
Sbjct: 1594 gaacttgatattatcat 1610

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>gb|AY104333.1| Zea mays PCO102651 mRNA sequence
          Length = 976

 Score =  347 bits (175), Expect = 2e-92
 Identities = 343/399 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggcagaagttccggtcacacaactgggactgtgatggcatatgcccttgagtacaatga 60
           |||||||||||| |||||||||||||| |||||| |||| ||||||||||||||||||||
Sbjct: 232 cggcagaagttctggtcacacaactggaactgtggtggcttatgcccttgagtacaatga 291

                                                                       
Query: 61  tgagaaaggaatatgcttcttcactgacctcctcgttgttggtgagaatcgccaaacatt 120
            |||||||||||| ||||||||||||||||||| ||||| || || || |||||||| ||
Sbjct: 292 cgagaaaggaataagcttcttcactgacctccttgttgtcggcgaaaaccgccaaacttt 351

                                                                       
Query: 121 tgatttggagggtgacagcggaagccttattatcctgaccagccaggatggggagaagcc 180
           |||| | || ||||| || ||||||||||||||||||||  ||||||||   ||||||||
Sbjct: 352 tgatctagaaggtgatagtggaagccttattatcctgactggccaggataatgagaagcc 411

                                                                       
Query: 181 acgtcctattgggataatatggggtggcacagcaaaccgtgggaggataaagctcacaag 240
             |||| ||||||||||||||||||||||||||||||||||||||| ||||||| |   |
Sbjct: 412 gtgtcccattgggataatatggggtggcacagcaaaccgtgggaggctaaagcttaggtg 471

                                                                       
Query: 241 tggctatggtcctgaaaactggactacaggggttgatcttggccgccttcttgatcgcct 300
           || | |||| |||||||| ||||| |  || |||||||||||||||||||| ||||| ||
Sbjct: 472 tgaccatggccctgaaaattggaccagtggagttgatcttggccgccttctggatcgtct 531

                                                                       
Query: 301 agaacttgatcttatcataaacgacgaatcgctcaaagatgctgtgcaggagcaaaggaa 360
            |||||||| |||||||||| | | ||||| ||||||||||| |||||| ||||||||  
Sbjct: 532 tgaacttgaccttatcataaccaatgaatcactcaaagatgccgtgcagcagcaaaggct 591

                                                  
Query: 361 tgcttttgtggctgcaattaactctgctattggggagtc 399
            || || |||||||||  |||||||||| ||||||||||
Sbjct: 592 cgcgttggtggctgcagctaactctgctgttggggagtc 630

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>gb|AY108385.1| Zea mays PCO111603 mRNA sequence
          Length = 1721

 Score =  129 bits (65), Expect = 8e-27
 Identities = 224/277 (80%)
 Strand = Plus / Plus

                                                                        
Query: 20   acaactgggactgtgatggcatatgcccttgagtacaatgatgagaaaggaatatgcttc 79
            ||||||||||||||  | ||||| || |||||||||||||||||||| |||||||| |||
Sbjct: 1062 acaactgggactgttgtcgcatacgcacttgagtacaatgatgagaagggaatatgtttc 1121

                                                                        
Query: 80   ttcactgacctcctcgttgttggtgagaatcgccaaacatttgatttggagggtgacagc 139
            ||||||||| | || || ||||| ||||| |  |||||||||||| | || || ||||| 
Sbjct: 1122 ttcactgactttcttgtcgttggggagaaccaacaaacatttgatcttgaaggggacagt 1181

                                                                        
Query: 140  ggaagccttattatcctgaccagccaggatggggagaagccacgtcctattgggataata 199
            |||||||| || ||| | ||  | || || || |||||||| |  ||||| || || |||
Sbjct: 1182 ggaagcctcataatcttaacaggacaagacggtgagaagccgcaacctataggaattata 1241

                                                                        
Query: 200  tggggtggcacagcaaaccgtgggaggataaagctcacaagtggctatggtcctgaaaac 259
            |||||||| ||||| ||||| || ||| | || || | ||||||| | ||||| || |||
Sbjct: 1242 tggggtggtacagctaaccggggaaggttgaaacttaaaagtggccagggtccggagaac 1301

                                                 
Query: 260  tggactacaggggttgatcttggccgccttcttgatc 296
            ||||| |  || |||||||||||||||||||||||||
Sbjct: 1302 tggacaagtggagttgatcttggccgccttcttgatc 1338

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>ref|XM_482325.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2343

 Score =  113 bits (57), Expect = 5e-22
 Identities = 210/261 (80%)
 Strand = Plus / Plus

                                                                        
Query: 36   tggcatatgcccttgagtacaatgatgagaaaggaatatgcttcttcactgacctcctcg 95
            ||||||| || ||||| |||||||||||||| || |||||||||||||| ||| | || |
Sbjct: 1427 tggcatacgctcttgaatacaatgatgagaagggcatatgcttcttcacagactttcttg 1486

                                                                        
Query: 96   ttgttggtgagaatcgccaaacatttgatttggagggtgacagcggaagccttattatcc 155
            ||||||| ||||| |  |||||||||||| | || || || || ||||||||||| ||| 
Sbjct: 1487 ttgttggggagaaccaacaaacatttgatcttgaaggggatagtggaagccttataatct 1546

                                                                        
Query: 156  tgaccagccaggatggggagaagccacgtcctattgggataatatggggtggcacagcaa 215
            | ||  |  | ||||| || |||||||  || || ||||| ||||||||||||||||| |
Sbjct: 1547 taacaggaaaagatggcgaaaagccacagcccatagggattatatggggtggcacagcca 1606

                                                                        
Query: 216  accgtgggaggataaagctcacaagtggctatggtcctgaaaactggactacaggggttg 275
            | || |||||| | ||||||| ||||||  | |||||||| |||||||| |  |||||||
Sbjct: 1607 atcgggggaggttgaagctcaaaagtggtcagggtcctgagaactggacaagtggggttg 1666

                                 
Query: 276  atcttggccgccttcttgatc 296
            |||| || || ||||| ||||
Sbjct: 1667 atctcggacggcttctggatc 1687

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>ref|XM_507227.1| PREDICTED Oryza sativa (japonica cultivar-group), P0453D01.16-2 mRNA
          Length = 2348

 Score =  113 bits (57), Expect = 5e-22
 Identities = 210/261 (80%)
 Strand = Plus / Plus

                                                                        
Query: 36   tggcatatgcccttgagtacaatgatgagaaaggaatatgcttcttcactgacctcctcg 95
            ||||||| || ||||| |||||||||||||| || |||||||||||||| ||| | || |
Sbjct: 1432 tggcatacgctcttgaatacaatgatgagaagggcatatgcttcttcacagactttcttg 1491

                                                                        
Query: 96   ttgttggtgagaatcgccaaacatttgatttggagggtgacagcggaagccttattatcc 155
            ||||||| ||||| |  |||||||||||| | || || || || ||||||||||| ||| 
Sbjct: 1492 ttgttggggagaaccaacaaacatttgatcttgaaggggatagtggaagccttataatct 1551

                                                                        
Query: 156  tgaccagccaggatggggagaagccacgtcctattgggataatatggggtggcacagcaa 215
            | ||  |  | ||||| || |||||||  || || ||||| ||||||||||||||||| |
Sbjct: 1552 taacaggaaaagatggcgaaaagccacagcccatagggattatatggggtggcacagcca 1611

                                                                        
Query: 216  accgtgggaggataaagctcacaagtggctatggtcctgaaaactggactacaggggttg 275
            | || |||||| | ||||||| ||||||  | |||||||| |||||||| |  |||||||
Sbjct: 1612 atcgggggaggttgaagctcaaaagtggtcagggtcctgagaactggacaagtggggttg 1671

                                 
Query: 276  atcttggccgccttcttgatc 296
            |||| || || ||||| ||||
Sbjct: 1672 atctcggacggcttctggatc 1692

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  113 bits (57), Expect = 5e-22
 Identities = 210/261 (80%)
 Strand = Plus / Plus

                                                                            
Query: 36       tggcatatgcccttgagtacaatgatgagaaaggaatatgcttcttcactgacctcctcg 95
                ||||||| || ||||| |||||||||||||| || |||||||||||||| ||| | || |
Sbjct: 19460814 tggcatacgctcttgaatacaatgatgagaagggcatatgcttcttcacagactttcttg 19460873

                                                                            
Query: 96       ttgttggtgagaatcgccaaacatttgatttggagggtgacagcggaagccttattatcc 155
                ||||||| ||||| |  |||||||||||| | || || || || ||||||||||| ||| 
Sbjct: 19460874 ttgttggggagaaccaacaaacatttgatcttgaaggggatagtggaagccttataatct 19460933

                                                                            
Query: 156      tgaccagccaggatggggagaagccacgtcctattgggataatatggggtggcacagcaa 215
                | ||  |  | ||||| || |||||||  || || ||||| ||||||||||||||||| |
Sbjct: 19460934 taacaggaaaagatggcgaaaagccacagcccatagggattatatggggtggcacagcca 19460993

                                                                            
Query: 216      accgtgggaggataaagctcacaagtggctatggtcctgaaaactggactacaggggttg 275
                | || |||||| | ||||||| ||||||  | |||||||| |||||||| |  |||||||
Sbjct: 19460994 atcgggggaggttgaagctcaaaagtggtcagggtcctgagaactggacaagtggggttg 19461053

                                     
Query: 276      atcttggccgccttcttgatc 296
                |||| || || ||||| ||||
Sbjct: 19461054 atctcggacggcttctggatc 19461074

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>dbj|AK120820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023016N14, full
            insert sequence
          Length = 2353

 Score =  113 bits (57), Expect = 5e-22
 Identities = 210/261 (80%)
 Strand = Plus / Plus

                                                                        
Query: 36   tggcatatgcccttgagtacaatgatgagaaaggaatatgcttcttcactgacctcctcg 95
            ||||||| || ||||| |||||||||||||| || |||||||||||||| ||| | || |
Sbjct: 1427 tggcatacgctcttgaatacaatgatgagaagggcatatgcttcttcacagactttcttg 1486

                                                                        
Query: 96   ttgttggtgagaatcgccaaacatttgatttggagggtgacagcggaagccttattatcc 155
            ||||||| ||||| |  |||||||||||| | || || || || ||||||||||| ||| 
Sbjct: 1487 ttgttggggagaaccaacaaacatttgatcttgaaggggatagtggaagccttataatct 1546

                                                                        
Query: 156  tgaccagccaggatggggagaagccacgtcctattgggataatatggggtggcacagcaa 215
            | ||  |  | ||||| || |||||||  || || ||||| ||||||||||||||||| |
Sbjct: 1547 taacaggaaaagatggcgaaaagccacagcccatagggattatatggggtggcacagcca 1606

                                                                        
Query: 216  accgtgggaggataaagctcacaagtggctatggtcctgaaaactggactacaggggttg 275
            | || |||||| | ||||||| ||||||  | |||||||| |||||||| |  |||||||
Sbjct: 1607 atcgggggaggttgaagctcaaaagtggtcagggtcctgagaactggacaagtggggttg 1666

                                 
Query: 276  atcttggccgccttcttgatc 296
            |||| || || ||||| ||||
Sbjct: 1667 atctcggacggcttctggatc 1687

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>dbj|AP004691.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0453D01
          Length = 147461

 Score =  113 bits (57), Expect = 5e-22
 Identities = 210/261 (80%)
 Strand = Plus / Plus

                                                                         
Query: 36    tggcatatgcccttgagtacaatgatgagaaaggaatatgcttcttcactgacctcctcg 95
             ||||||| || ||||| |||||||||||||| || |||||||||||||| ||| | || |
Sbjct: 55571 tggcatacgctcttgaatacaatgatgagaagggcatatgcttcttcacagactttcttg 55630

                                                                         
Query: 96    ttgttggtgagaatcgccaaacatttgatttggagggtgacagcggaagccttattatcc 155
             ||||||| ||||| |  |||||||||||| | || || || || ||||||||||| ||| 
Sbjct: 55631 ttgttggggagaaccaacaaacatttgatcttgaaggggatagtggaagccttataatct 55690

                                                                         
Query: 156   tgaccagccaggatggggagaagccacgtcctattgggataatatggggtggcacagcaa 215
             | ||  |  | ||||| || |||||||  || || ||||| ||||||||||||||||| |
Sbjct: 55691 taacaggaaaagatggcgaaaagccacagcccatagggattatatggggtggcacagcca 55750

                                                                         
Query: 216   accgtgggaggataaagctcacaagtggctatggtcctgaaaactggactacaggggttg 275
             | || |||||| | ||||||| ||||||  | |||||||| |||||||| |  |||||||
Sbjct: 55751 atcgggggaggttgaagctcaaaagtggtcagggtcctgagaactggacaagtggggttg 55810

                                  
Query: 276   atcttggccgccttcttgatc 296
             |||| || || ||||| ||||
Sbjct: 55811 atctcggacggcttctggatc 55831

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>dbj|AK067656.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114M11, full
            insert sequence
          Length = 3270

 Score =  113 bits (57), Expect = 5e-22
 Identities = 210/261 (80%)
 Strand = Plus / Plus

                                                                        
Query: 36   tggcatatgcccttgagtacaatgatgagaaaggaatatgcttcttcactgacctcctcg 95
            ||||||| || ||||| |||||||||||||| || |||||||||||||| ||| | || |
Sbjct: 2253 tggcatacgctcttgaatacaatgatgagaagggcatatgcttcttcacagactttcttg 2312

                                                                        
Query: 96   ttgttggtgagaatcgccaaacatttgatttggagggtgacagcggaagccttattatcc 155
            ||||||| ||||| |  |||||||||||| | || || || || ||||||||||| ||| 
Sbjct: 2313 ttgttggggagaaccaacaaacatttgatcttgaaggggatagtggaagccttataatct 2372

                                                                        
Query: 156  tgaccagccaggatggggagaagccacgtcctattgggataatatggggtggcacagcaa 215
            | ||  |  | ||||| || |||||||  || || ||||| ||||||||||||||||| |
Sbjct: 2373 taacaggaaaagatggcgaaaagccacagcccatagggattatatggggtggcacagcca 2432

                                                                        
Query: 216  accgtgggaggataaagctcacaagtggctatggtcctgaaaactggactacaggggttg 275
            | || |||||| | ||||||| ||||||  | |||||||| |||||||| |  |||||||
Sbjct: 2433 atcgggggaggttgaagctcaaaagtggtcagggtcctgagaactggacaagtggggttg 2492

                                 
Query: 276  atcttggccgccttcttgatc 296
            |||| || || ||||| ||||
Sbjct: 2493 atctcggacggcttctggatc 2513

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>dbj|AK067568.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111J10, full
            insert sequence
          Length = 2347

 Score =  113 bits (57), Expect = 5e-22
 Identities = 210/261 (80%)
 Strand = Plus / Plus

                                                                        
Query: 36   tggcatatgcccttgagtacaatgatgagaaaggaatatgcttcttcactgacctcctcg 95
            ||||||| || ||||| |||||||||||||| || |||||||||||||| ||| | || |
Sbjct: 1431 tggcatacgctcttgaatacaatgatgagaagggcatatgcttcttcacagactttcttg 1490

                                                                        
Query: 96   ttgttggtgagaatcgccaaacatttgatttggagggtgacagcggaagccttattatcc 155
            ||||||| ||||| |  |||||||||||| | || || || || ||||||||||| ||| 
Sbjct: 1491 ttgttggggagaaccaacaaacatttgatcttgaaggggatagtggaagccttataatct 1550

                                                                        
Query: 156  tgaccagccaggatggggagaagccacgtcctattgggataatatggggtggcacagcaa 215
            | ||  |  | ||||| || |||||||  || || ||||| ||||||||||||||||| |
Sbjct: 1551 taacaggaaaagatggcgaaaagccacagcccatagggattatatggggtggcacagcca 1610

                                                                        
Query: 216  accgtgggaggataaagctcacaagtggctatggtcctgaaaactggactacaggggttg 275
            | || |||||| | ||||||| ||||||  | |||||||| |||||||| |  |||||||
Sbjct: 1611 atcgggggaggttgaagctcaaaagtggtcagggtcctgagaactggacaagtggggttg 1670

                                 
Query: 276  atcttggccgccttcttgatc 296
            |||| || || ||||| ||||
Sbjct: 1671 atctcggacggcttctggatc 1691

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>dbj|AK099113.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034D12, full
            insert sequence
          Length = 2343

 Score =  105 bits (53), Expect = 1e-19
 Identities = 209/261 (80%)
 Strand = Plus / Plus

                                                                        
Query: 36   tggcatatgcccttgagtacaatgatgagaaaggaatatgcttcttcactgacctcctcg 95
            ||||||| || ||||| |||||||||||||| || |||||||||||||| ||| | || |
Sbjct: 1427 tggcatacgctcttgaatacaatgatgagaagggcatatgcttcttcacagactttcttg 1486

                                                                        
Query: 96   ttgttggtgagaatcgccaaacatttgatttggagggtgacagcggaagccttattatcc 155
            ||||||| ||||| |  |||||||||||| | || || || || ||||||||||| ||| 
Sbjct: 1487 ttgttggggagaaccaacaaacatttgatcttgaaggggatagtggaagccttataatct 1546

                                                                        
Query: 156  tgaccagccaggatggggagaagccacgtcctattgggataatatggggtggcacagcaa 215
            | ||  |  | ||||| || ||||| |  || || ||||| ||||||||||||||||| |
Sbjct: 1547 taacaggaaaagatggcgaaaagccccagcccatagggattatatggggtggcacagcca 1606

                                                                        
Query: 216  accgtgggaggataaagctcacaagtggctatggtcctgaaaactggactacaggggttg 275
            | || |||||| | ||||||| ||||||  | |||||||| |||||||| |  |||||||
Sbjct: 1607 atcgggggaggttgaagctcaaaagtggtcagggtcctgagaactggacaagtggggttg 1666

                                 
Query: 276  atcttggccgccttcttgatc 296
            |||| || || ||||| ||||
Sbjct: 1667 atctcggacggcttctggatc 1687

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>gb|BT014552.1| Lycopersicon esculentum clone 133974R, mRNA sequence
          Length = 2377

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 138/170 (81%)
 Strand = Plus / Plus

                                                                        
Query: 35   atggcatatgcccttgagtacaatgatgagaaaggaatatgcttcttcactgacctcctc 94
            ||||| |||||||| ||||| |||||||| |||||||| || ||||| || ||  | || 
Sbjct: 1391 atggcctatgccctggagtataatgatgaaaaaggaatttgtttctttacagattttcta 1450

                                                                        
Query: 95   gttgttggtgagaatcgccaaacatttgatttggagggtgacagcggaagccttattatc 154
            |||||||||||||| |  || ||||||||| | || |||||||| || ||||| ||| ||
Sbjct: 1451 gttgttggtgagaaccaacagacatttgatcttgaaggtgacagtggtagcctcattctc 1510

                                                              
Query: 155  ctgaccagccaggatggggagaagccacgtcctattgggataatatgggg 204
             |||| ||||  || |||||||||||||| ||||| || ||||| |||||
Sbjct: 1511 ttgactagccctgagggggagaagccacgacctataggaataatttgggg 1560

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>gb|BT013672.1| Lycopersicon esculentum clone 132491F, mRNA sequence
          Length = 2172

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                
Query: 36   tggcatatgcccttgagtacaatgatgagaaaggaatatgcttcttcactga 87
            |||||||||||||||| || |||||||||||||| || |||||||| |||||
Sbjct: 1189 tggcatatgcccttgaatataatgatgagaaagggatttgcttcttgactga 1240

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>gb|AC149576.3| Medicago truncatula chromosome 2 BAC clone mte1-17c12, complete
             sequence
          Length = 75005

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 26    gggactgtgatggcatatgcccttgagtacaatgatgagaaagg 69
             |||||| | ||||| |||||||||||||| ||||||||||||||
Sbjct: 12881 gggactataatggcttatgcccttgagtataatgatgagaaagg 12924



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 272   gttgatcttggccgccttcttgatcgcctagaacttgatct 312
             ||||| ||||| || |||||||||| ||| |||||||||||
Sbjct: 13127 gttgaccttggacggcttcttgatctccttgaacttgatct 13167

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>gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-138b18, complete
           sequence
          Length = 128810

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                       
Query: 26  gggactgtgatggcatatgcccttgagtacaatgatgagaaagg 69
           |||||| | ||||| |||||||||||||| ||||||||||||||
Sbjct: 974 gggactataatggcttatgcccttgagtataatgatgagaaagg 931



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 272 gttgatcttggccgccttcttgatcgcctagaacttgatct 312
           ||||| ||||| || |||||||||| ||| |||||||||||
Sbjct: 728 gttgaccttggacggcttcttgatctccttgaacttgatct 688

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 272     gttgatcttggccgccttcttgatcgcct 300
               |||||||| ||||||||||||||||||||
Sbjct: 8582058 gttgatctcggccgccttcttgatcgcct 8582030

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>ref|NM_112131.3| Arabidopsis thaliana unknown protein AT3G12950 mRNA, complete cds
          Length = 2174

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                       
Query: 29   actgtgatggcatatgcccttgagtacaatgatgagaaaggaatatgcttcttcactga 87
            |||||| |||| ||||| || ||||||||||| |||| |||| | |||||| |||||||
Sbjct: 1203 actgtgctggcttatgcactggagtacaatgacgagagaggagtctgcttcctcactga 1261

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>gb|BT015744.1| Arabidopsis thaliana At3g12950 mRNA, complete cds
          Length = 1677

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                       
Query: 29   actgtgatggcatatgcccttgagtacaatgatgagaaaggaatatgcttcttcactga 87
            |||||| |||| ||||| || ||||||||||| |||| |||| | |||||| |||||||
Sbjct: 976  actgtgctggcttatgcactggagtacaatgacgagagaggagtctgcttcctcactga 1034

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>gb|BT012224.1| Arabidopsis thaliana At3g12950 gene, complete cds
          Length = 1976

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                       
Query: 29   actgtgatggcatatgcccttgagtacaatgatgagaaaggaatatgcttcttcactga 87
            |||||| |||| ||||| || ||||||||||| |||| |||| | |||||| |||||||
Sbjct: 1118 actgtgctggcttatgcactggagtacaatgacgagagaggagtctgcttcctcactga 1176

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>dbj|AB026645.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6
          Length = 81020

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 29    actgtgatggcatatgcccttgagtacaatgatgagaaaggaatatgcttcttcactga 87
             |||||| |||| ||||| || ||||||||||| |||| |||| | |||||| |||||||
Sbjct: 23983 actgtgctggcttatgcactggagtacaatgacgagagaggagtctgcttcctcactga 23925

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>gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, complete sequence
          Length = 172618

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 160    cagccaggatggggagaagcca 181
              ||||||||||||||||||||||
Sbjct: 126305 cagccaggatggggagaagcca 126326

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>gb|AC006267.1| Arabidopsis thaliana BAC F9M13 from chromosome IV near 21.5 cM,
             complete sequence
          Length = 101644

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 291   ttgatcgcctagaacttgatctta 314
             |||||| |||||||||||||||||
Sbjct: 71397 ttgatcacctagaacttgatctta 71374

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>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 336     aagatgctgtgcaggagcaa 355
               ||||||||||||||||||||
Sbjct: 1325092 aagatgctgtgcaggagcaa 1325073

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>emb|AL161510.2|ATCHRIV22 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 22
          Length = 198131

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 291   ttgatcgcctagaacttgatctta 314
             |||||| |||||||||||||||||
Sbjct: 57642 ttgatcacctagaacttgatctta 57665

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>emb|AL138640.1|ATT12K4 Arabidopsis thaliana DNA chromosome 3, BAC clone T12K4
          Length = 108879

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 291  ttgatcgcctagaacttgatctta 314
            |||||| |||||||||||||||||
Sbjct: 8922 ttgatcacctagaacttgatctta 8899

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>emb|AL132909.1|ATT14K23 Arabidopsis thaliana DNA chromosome 3, BAC clone T14K23
          Length = 101786

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 291   ttgatcgcctagaacttgatctta 314
             |||||| |||||||||||||||||
Sbjct: 32660 ttgatcacctagaacttgatctta 32637

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>gb|AC104690.2| Homo sapiens BAC clone RP11-183P23 from 4, complete sequence
          Length = 126700

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 347   caggagcaaaggaatgcttttgtg 370
             ||||||| ||||||||||||||||
Sbjct: 14357 caggagctaaggaatgcttttgtg 14380

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>dbj|AK169946.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630005C21
            product:RAB14, member RAS oncogene family, full insert
            sequence
          Length = 5004

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 158  accagccaggatggggagaagcca 181
            |||||||||||| |||||||||||
Sbjct: 1061 accagccaggatagggagaagcca 1038

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>gb|AC027036.12|AC027036 Arabidopsis thaliana chromosome 1 BAC T4M14 genomic sequence, complete
             sequence
          Length = 89737

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 291   ttgatcgcctagaacttgatctta 314
             |||||| |||||||||||||||||
Sbjct: 79091 ttgatcacctagaacttgatctta 79068

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>dbj|AK028412.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
           library, clone:4022401C19 product:serine/arginine
           repetitive matrix 1, full insert sequence
          Length = 3644

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 cttggccgccttcttgatcg 297
           ||||||||||||||||||||
Sbjct: 956 cttggccgccttcttgatcg 937

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>dbj|AK043699.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched
            library, clone:A830021G03 product:RAB14, member RAS
            oncogene family, full insert sequence
          Length = 4366

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 158  accagccaggatggggagaagcca 181
            |||||||||||| |||||||||||
Sbjct: 1078 accagccaggatagggagaagcca 1055

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>gb|AF262043.1|T26D3 Arabidopsis thaliana BAC T26D3
          Length = 81223

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 291 ttgatcgcctagaacttgatctta 314
           |||||| |||||||||||||||||
Sbjct: 383 ttgatcacctagaacttgatctta 406

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>gb|AF262039.1|F24J2 Arabidopsis thaliana BAC F24J2
          Length = 80472

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 291   ttgatcgcctagaacttgatctta 314
             |||||| |||||||||||||||||
Sbjct: 73894 ttgatcacctagaacttgatctta 73917

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>gb|AC009317.4|AC009317 Genomic sequence for Arabidopsis thaliana BAC T30E16 from chromosome I,
             complete sequence
          Length = 100008

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 291   ttgatcgcctagaacttgatctta 314
             |||||| |||||||||||||||||
Sbjct: 22240 ttgatcacctagaacttgatctta 22217

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>dbj|AP002043.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MJI6
          Length = 83912

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 291   ttgatcgcctagaacttgatctta 314
             |||||| |||||||||||||||||
Sbjct: 58815 ttgatcacctagaacttgatctta 58792

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>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V,
             complete sequence
          Length = 105589

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 291   ttgatcgcctagaacttgatctta 314
             ||||||| ||||||||||||||||
Sbjct: 79235 ttgatcgtctagaacttgatctta 79258

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>gb|AC161465.3| Gallus gallus BAC clone CH261-97D4 from chromosome ul, complete sequence
          Length = 213337

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     tgatgagaaaggaatatgct 77
              ||||||||||||||||||||
Sbjct: 204156 tgatgagaaaggaatatgct 204137

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>emb|AL773523.4| Mouse DNA sequence from clone RP23-186B18 on chromosome 2, complete
             sequence
          Length = 198403

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 158   accagccaggatggggagaagcca 181
             |||||||||||| |||||||||||
Sbjct: 44000 accagccaggatagggagaagcca 44023

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>gb|AC134027.2| Homo sapiens 3 BAC RP11-358B24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 139300

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 331    gctcaaagatgctgtgcaggagca 354
              ||||||||| ||||||||||||||
Sbjct: 113651 gctcaaagaggctgtgcaggagca 113674


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,558,421
Number of Sequences: 3902068
Number of extensions: 3558421
Number of successful extensions: 66203
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66062
Number of HSP's gapped (non-prelim): 139
length of query: 433
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 411
effective length of database: 17,147,199,772
effective search space: 7047499106292
effective search space used: 7047499106292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result