ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet67c03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 174 bits (88), Expect = 1e-40 Identities = 229/276 (82%) Strand = Plus / Plus Query: 116 cgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccg 175 ||||||| ||||||||||||| |||||| ||| ||| ||||||| ||||| ||||| Sbjct: 88573 cgccgtgctgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccg 88632 Query: 176 gcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctg 235 |||||| ||||| |||| || ||| ||||||||| ||||| | |||||| |||| || Sbjct: 88633 gcagcggacgccgcaggcgcccttgaaggccgtgctggacctcgccggcgccacgctgtg 88692 Query: 236 ggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtccaa 295 |||||||||||| |||||||||||||| ||||| |||||| |||||||||||| |||||| Sbjct: 88693 ggtggactgcgaggccgggtacgtgtcgtcgtcgtacgcgcgcgtgccgtgcgggtccaa 88752 Query: 296 gctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccgtcccc 355 || |||||||||||| |||| || |||||||||||||||| |||| |||||| || Sbjct: 88753 gcagtgccgcctcgccaagaccaacgcgtgcgccaccagctgcgacggcgcgccgtcgcc 88812 Query: 356 ggggtgtctgaacgacacctgtagcgggttcccgga 391 || || || ||||||||||| ||||||||||||| Sbjct: 88813 ggcctgcctcaacgacacctgcggcgggttcccgga 88848 Score = 165 bits (83), Expect = 1e-37 Identities = 227/275 (82%) Strand = Plus / Plus Query: 117 gccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccgg 176 |||||||||||||||||||| |||||| ||| ||| ||||||| ||||| |||||| Sbjct: 91067 gccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgcgacggtgttccgg 91126 Query: 177 cagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctgg 236 ||||| ||||| ||||| || |||| ||||||||| ||||| | |||||| |||||||| Sbjct: 91127 cagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcgccacgctctgg 91186 Query: 237 gtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtccaag 296 ||||||||||| ||||||||||||| |||||||||||| | || ||||||| ||||||| Sbjct: 91187 gtggactgcgataccgggtacgtgtcgtcgtcctacgcgcgtgtcccgtgcgggtccaag 91246 Query: 297 ctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccgtccccg 356 | |||||||||| | |||| | | |||| || ||||||| ||||| ||| |||||| Sbjct: 91247 ccgtgccgcctcaccaagaccggcggctgcttcaacagctgcttcggcgcgccatccccg 91306 Query: 357 gggtgtctgaacgacacctgtagcgggttcccgga 391 | || || |||| |||||| |||||||||||||| Sbjct: 91307 gcctgcctcaacggcacctgcagcgggttcccgga 91341 Score = 141 bits (71), Expect = 2e-30 Identities = 146/171 (85%) Strand = Plus / Plus Query: 118 ccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccggc 177 ||||||||||||||||||| |||||| ||| ||| ||||||| ||||| ||||||| Sbjct: 102455 ccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccggc 102514 Query: 178 agcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctggg 237 |||| ||||| ||||| || |||| ||||||||| ||||| | ||| || |||||||| Sbjct: 102515 agcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcaccatgctctggg 102574 Query: 238 tggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcg 288 ||||||||||||||||||||||||||||||| ||||| ||||||| ||||| Sbjct: 102575 tggactgcgacgccgggtacgtgtcctcgtcgtacgccggcgtgcggtgcg 102625 Score = 131 bits (66), Expect = 2e-27 Identities = 225/278 (80%) Strand = Plus / Plus Query: 114 agcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttc 173 ||||||||| ||||||||||| |||||| |||||||| ||||||| ||||| ||| Sbjct: 95449 agcgccgtgctgctgccggtggacaaggacggcgcaacgcagcagtacgtgacgatgttc 95508 Query: 174 cggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctc 233 ||||||| ||||| || || |||| ||||||| | ||||| | |||||| |||| Sbjct: 95509 tggcagcggacgccgagtgtgcccgtgaaggccgtggttgacctcgcgggcgccatgctc 95568 Query: 234 tgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtcc 293 |||||||||||||| ||||||||| ||| ||||| || ||| |||||||||||| |||| Sbjct: 95569 tgggtggactgcgagtccgggtacgagtcgtcgtcgtatgcgcgcgtgccgtgcgggtcc 95628 Query: 294 aagctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccgtcc 353 |||| ||||||||||||||||| | ||||| |||||| ||||| ||| | ||||| Sbjct: 95629 aagccttgccgcctcgcgaagagcgccgcctgtgccaccggctgctccggtgcggcgtcc 95688 Query: 354 ccggggtgtctgaacgacacctgtagcgggttcccgga 391 ||||| || || ||||||||||| | |||||||||||| Sbjct: 95689 ccgggctgcctcaacgacacctgcaccgggttcccgga 95726
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 174 bits (88), Expect = 1e-40 Identities = 229/276 (82%) Strand = Plus / Plus Query: 116 cgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccg 175 ||||||| ||||||||||||| |||||| ||| ||| ||||||| ||||| ||||| Sbjct: 19487861 cgccgtgctgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccg 19487920 Query: 176 gcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctg 235 |||||| ||||| |||| || ||| ||||||||| ||||| | |||||| |||| || Sbjct: 19487921 gcagcggacgccgcaggcgcccttgaaggccgtgctggacctcgccggcgccacgctgtg 19487980 Query: 236 ggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtccaa 295 |||||||||||| |||||||||||||| ||||| |||||| |||||||||||| |||||| Sbjct: 19487981 ggtggactgcgaggccgggtacgtgtcgtcgtcgtacgcgcgcgtgccgtgcgggtccaa 19488040 Query: 296 gctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccgtcccc 355 || |||||||||||| |||| || |||||||||||||||| |||| |||||| || Sbjct: 19488041 gcagtgccgcctcgccaagaccaacgcgtgcgccaccagctgcgacggcgcgccgtcgcc 19488100 Query: 356 ggggtgtctgaacgacacctgtagcgggttcccgga 391 || || || ||||||||||| ||||||||||||| Sbjct: 19488101 ggcctgcctcaacgacacctgcggcgggttcccgga 19488136 Score = 165 bits (83), Expect = 1e-37 Identities = 227/275 (82%) Strand = Plus / Plus Query: 117 gccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccgg 176 |||||||||||||||||||| |||||| ||| ||| ||||||| ||||| |||||| Sbjct: 19490355 gccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgcgacggtgttccgg 19490414 Query: 177 cagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctgg 236 ||||| ||||| ||||| || |||| ||||||||| ||||| | |||||| |||||||| Sbjct: 19490415 cagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcgccacgctctgg 19490474 Query: 237 gtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtccaag 296 ||||||||||| ||||||||||||| |||||||||||| | || ||||||| ||||||| Sbjct: 19490475 gtggactgcgataccgggtacgtgtcgtcgtcctacgcgcgtgtcccgtgcgggtccaag 19490534 Query: 297 ctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccgtccccg 356 | |||||||||| | |||| | | |||| || ||||||| ||||| ||| |||||| Sbjct: 19490535 ccgtgccgcctcaccaagaccggcggctgcttcaacagctgcttcggcgcgccatccccg 19490594 Query: 357 gggtgtctgaacgacacctgtagcgggttcccgga 391 | || || |||| |||||| |||||||||||||| Sbjct: 19490595 gcctgcctcaacggcacctgcagcgggttcccgga 19490629 Score = 141 bits (71), Expect = 2e-30 Identities = 146/171 (85%) Strand = Plus / Plus Query: 118 ccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccggc 177 ||||||||||||||||||| |||||| ||| ||| ||||||| ||||| ||||||| Sbjct: 19501743 ccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccggc 19501802 Query: 178 agcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctggg 237 |||| ||||| ||||| || |||| ||||||||| ||||| | ||| || |||||||| Sbjct: 19501803 agcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcaccatgctctggg 19501862 Query: 238 tggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcg 288 ||||||||||||||||||||||||||||||| ||||| ||||||| ||||| Sbjct: 19501863 tggactgcgacgccgggtacgtgtcctcgtcgtacgccggcgtgcggtgcg 19501913 Score = 131 bits (66), Expect = 2e-27 Identities = 225/278 (80%) Strand = Plus / Plus Query: 114 agcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttc 173 ||||||||| ||||||||||| |||||| |||||||| ||||||| ||||| ||| Sbjct: 19494737 agcgccgtgctgctgccggtggacaaggacggcgcaacgcagcagtacgtgacgatgttc 19494796 Query: 174 cggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctc 233 ||||||| ||||| || || |||| ||||||| | ||||| | |||||| |||| Sbjct: 19494797 tggcagcggacgccgagtgtgcccgtgaaggccgtggttgacctcgcgggcgccatgctc 19494856 Query: 234 tgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtcc 293 |||||||||||||| ||||||||| ||| ||||| || ||| |||||||||||| |||| Sbjct: 19494857 tgggtggactgcgagtccgggtacgagtcgtcgtcgtatgcgcgcgtgccgtgcgggtcc 19494916 Query: 294 aagctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccgtcc 353 |||| ||||||||||||||||| | ||||| |||||| ||||| ||| | ||||| Sbjct: 19494917 aagccttgccgcctcgcgaagagcgccgcctgtgccaccggctgctccggtgcggcgtcc 19494976 Query: 354 ccggggtgtctgaacgacacctgtagcgggttcccgga 391 ||||| || || ||||||||||| | |||||||||||| Sbjct: 19494977 ccgggctgcctcaacgacacctgcaccgggttcccgga 19495014
>dbj|AK070554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061A08, full insert sequence Length = 1474 Score = 153 bits (77), Expect = 5e-34 Identities = 227/276 (82%), Gaps = 2/276 (0%) Strand = Plus / Plus Query: 116 cgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccg 175 ||||||| ||||||||||||| |||||| ||| ||| ||||||| ||||| ||||| Sbjct: 143 cgccgtgctgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccg 202 Query: 176 gcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctg 235 |||||| ||||| |||| || ||| ||||||||| ||||| | |||||| |||| || Sbjct: 203 gcagcggacgccgcaggcgcccttgaaggccgtgctggacctcgccggcgccacgctgtg 262 Query: 236 ggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtccaa 295 ||||||||| | |||||||||||||| ||||| |||||| |||||||||||| |||||| Sbjct: 263 ggtggactgag--gccgggtacgtgtcgtcgtcgtacgcgcgcgtgccgtgcgggtccaa 320 Query: 296 gctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccgtcccc 355 || |||||||||||| |||| || |||||||||||||||| |||| |||||| || Sbjct: 321 gcagtgccgcctcgccaagaccaacgcgtgcgccaccagctgcgacggcgcgccgtcgcc 380 Query: 356 ggggtgtctgaacgacacctgtagcgggttcccgga 391 || || || ||||||||||| ||||||||||||| Sbjct: 381 ggcctgcctcaacgacacctgcggcgggttcccgga 416
>dbj|AK122177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148M15, full insert sequence Length = 1741 Score = 141 bits (71), Expect = 2e-30 Identities = 146/171 (85%) Strand = Plus / Plus Query: 118 ccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccggc 177 ||||||||||||||||||| |||||| ||| ||| ||||||| ||||| ||||||| Sbjct: 334 ccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccggc 393 Query: 178 agcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctggg 237 |||| ||||| ||||| || |||| ||||||||| ||||| | ||| || |||||||| Sbjct: 394 agcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcaccatgctctggg 453 Query: 238 tggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcg 288 ||||||||||||||||||||||||||||||| ||||| ||||||| ||||| Sbjct: 454 tggactgcgacgccgggtacgtgtcctcgtcgtacgccggcgtgcggtgcg 504
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 61.9 bits (31), Expect = 1e-06 Identities = 119/148 (80%), Gaps = 9/148 (6%) Strand = Plus / Plus Query: 171 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgacct---tggaggcgcc 227 |||| |||||||||||| | ||| |||||| ||||||| | ||||| || |||||| Sbjct: 15504957 ttccagcagcgaacgccgcgggtggcggtgaaggccgtggtggacctctcgggcggcgcc 15505016 Query: 228 tcgctctgggtggactgcga------cgccgggtacgtgtcctcgtcctacgcgggcgtg 281 ||||||||||||||||||| ||||||||||| ||| || || ||||| |||||| Sbjct: 15505017 acgctctgggtggactgcgacgccgccgccgggtacgcgtcgtcctcgtacgccggcgtg 15505076 Query: 282 ccgtgcgcgtccaagctgtgccgcctcg 309 || |||| |||||||| |||||||||| Sbjct: 15505077 ccatgcgggtccaagccctgccgcctcg 15505104
>dbj|AP005886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0689B09 Length = 144932 Score = 61.9 bits (31), Expect = 1e-06 Identities = 119/148 (80%), Gaps = 9/148 (6%) Strand = Plus / Plus Query: 171 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgacct---tggaggcgcc 227 |||| |||||||||||| | ||| |||||| ||||||| | ||||| || |||||| Sbjct: 25812 ttccagcagcgaacgccgcgggtggcggtgaaggccgtggtggacctctcgggcggcgcc 25871 Query: 228 tcgctctgggtggactgcga------cgccgggtacgtgtcctcgtcctacgcgggcgtg 281 ||||||||||||||||||| ||||||||||| ||| || || ||||| |||||| Sbjct: 25872 acgctctgggtggactgcgacgccgccgccgggtacgcgtcgtcctcgtacgccggcgtg 25931 Query: 282 ccgtgcgcgtccaagctgtgccgcctcg 309 || |||| |||||||| |||||||||| Sbjct: 25932 ccatgcgggtccaagccctgccgcctcg 25959
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 61.9 bits (31), Expect = 1e-06 Identities = 119/148 (80%), Gaps = 9/148 (6%) Strand = Plus / Plus Query: 171 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgacct---tggaggcgcc 227 |||| |||||||||||| | ||| |||||| ||||||| | ||||| || |||||| Sbjct: 154249 ttccagcagcgaacgccgcgggtggcggtgaaggccgtggtggacctctcgggcggcgcc 154308 Query: 228 tcgctctgggtggactgcga------cgccgggtacgtgtcctcgtcctacgcgggcgtg 281 ||||||||||||||||||| ||||||||||| ||| || || ||||| |||||| Sbjct: 154309 acgctctgggtggactgcgacgccgccgccgggtacgcgtcgtcctcgtacgccggcgtg 154368 Query: 282 ccgtgcgcgtccaagctgtgccgcctcg 309 || |||| |||||||| |||||||||| Sbjct: 154369 ccatgcgggtccaagccctgccgcctcg 154396
>ref|XM_512475.1| PREDICTED: Pan troglodytes similar to myosin IXB (LOC455819), mRNA Length = 2636 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 tgtggcctgcgccaccagctgc 338 |||||||||||||||||||||| Sbjct: 542 tgtggcctgcgccaccagctgc 521
>ref|NM_004145.2| Homo sapiens myosin IXB (MYO9B), mRNA Length = 7488 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 tgtggcctgcgccaccagctgc 338 |||||||||||||||||||||| Sbjct: 390 tgtggcctgcgccaccagctgc 369
>gb|AC020908.7| Homo sapiens chromosome 19 clone CTD-2528A14, complete sequence Length = 174034 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 tgtggcctgcgccaccagctgc 338 |||||||||||||||||||||| Sbjct: 173127 tgtggcctgcgccaccagctgc 173106
>gb|AC092476.1|AC092476 Homo sapiens chromosome 19 clone LLNLR-231E1, complete sequence Length = 2400 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 tgtggcctgcgccaccagctgc 338 |||||||||||||||||||||| Sbjct: 95 tgtggcctgcgccaccagctgc 74
>dbj|AB209997.1| Homo sapiens mRNA for MYO9B variant protein, partial cds, clone: ef05385 Length = 7607 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 tgtggcctgcgccaccagctgc 338 |||||||||||||||||||||| Sbjct: 537 tgtggcctgcgccaccagctgc 516
>gb|U42391.1|HSU42391 Human myosin-IXb mRNA, complete cds Length = 6069 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 tgtggcctgcgccaccagctgc 338 |||||||||||||||||||||| Sbjct: 390 tgtggcctgcgccaccagctgc 369
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 ctctgccagccagccctcagc 31 ||||||||||||||||||||| Sbjct: 2946487 ctctgccagccagccctcagc 2946467
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 aggtcccggtgacggccgtg 209 |||||||||||||||||||| Sbjct: 3188471 aggtcccggtgacggccgtg 3188490
>emb|CT009536.7| Mouse DNA sequence from clone RP23-25A7 on chromosome 14, complete sequence Length = 239515 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tctgccagccagccctcagc 31 |||||||||||||||||||| Sbjct: 131523 tctgccagccagccctcagc 131504
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 cgtgctcgtgccgcgcggcc 100 |||||||||||||||||||| Sbjct: 4935908 cgtgctcgtgccgcgcggcc 4935927
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cctacgcgggcgtgccgtgc 287 |||||||||||||||||||| Sbjct: 740360 cctacgcgggcgtgccgtgc 740379
>gb|AC167562.5| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940122D9, complete sequence Length = 114898 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 tggcctgcgccaccagctgc 338 |||||||||||||||||||| Sbjct: 9582 tggcctgcgccaccagctgc 9601
>gb|U18777.1|MAU18777 Mycobacterium avium plasmid pLR7 Rep gene, complete cds Length = 1828 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cctacgcgggcgtgccgtgc 287 |||||||||||||||||||| Sbjct: 288 cctacgcgggcgtgccgtgc 307 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,729,847 Number of Sequences: 3902068 Number of extensions: 1729847 Number of successful extensions: 33038 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32733 Number of HSP's gapped (non-prelim): 297 length of query: 391 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 369 effective length of database: 17,147,199,772 effective search space: 6327316715868 effective search space used: 6327316715868 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
