Clone Information

BLAST Search Result

Clone Name	baet66h06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RHO_MYCTU (P66028) Transcription termination factor rho (EC 3.6....	36	0.058
2	RHO_MYCBO (P66029) Transcription termination factor rho (EC 3.6....	36	0.058
3	ZF64A_HUMAN (Q9NPA5) Zinc finger protein 64, isoforms 1 and 2 (Z...	34	0.17
4	ASX_DROME (Q9V727) Polycomb protein Asx (Additional sex combs)	34	0.17
5	HEMH_MYCAV (O07401) Ferrochelatase (EC 4.99.1.1) (Protoheme ferr...	34	0.22
6	HEBP2_HUMAN (Q9Y5Z4) Heme-binding protein 2 (Protein SOUL) (Plac...	32	0.64
7	ADRM1_MOUSE (Q9JKV1) Adhesion-regulating molecule 1 precursor (1...	32	0.83
8	IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 s...	32	1.1
9	GRA6_TOXGO (Q27003) Dense granule protein 6 (Protein GRA 6) (Ant...	32	1.1
10	LRC50_HUMAN (Q8NEP3) Leucine-rich repeat-containing protein 50	31	1.4
11	SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dep...	31	1.4
12	SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dep...	31	1.4
13	TNR8_HUMAN (P28908) Tumor necrosis factor receptor superfamily m...	31	1.4
14	NDF4_XENLA (P79920) Neurogenic differentiation factor 4 (NeuroD4...	31	1.4
15	IF2_BORBR (Q7WHG2) Translation initiation factor IF-2	31	1.9
16	RDRP_TCV (P17460) Probable RNA-directed RNA polymerase (EC 2.7.7...	30	2.4
17	AN32A_RAT (P49911) Acidic leucine-rich nuclear phosphoprotein 32...	30	3.2
18	CS021_HUMAN (Q8IVT2) Protein C19orf21	30	4.1
19	IF2_BORPA (Q7W9A5) Translation initiation factor IF-2	30	4.1
20	IF2_BORPE (Q7VYR2) Translation initiation factor IF-2	30	4.1
21	PMP20_CHLPN (Q9Z812) Probable outer membrane protein pmp20 precu...	30	4.1
22	ANLN_XENLA (Q801E2) Actin-binding protein anillin	29	5.4
23	RL15_BUCAK (P46185) 50S ribosomal protein L15	29	5.4
24	YHT1_YEAST (P38835) PH domain protein YHR131C	29	5.4
25	MCL1_CANFA (Q8HYS5) Induced myeloid leukemia cell differentiatio...	29	5.4
26	IF2_DEIRA (Q9RTG5) Translation initiation factor IF-2	29	5.4
27	TNNI3_CAEEL (Q9XUN9) Troponin I 3 (TnI 3)	29	5.4
28	IF2_PSEPK (Q88DV7) Translation initiation factor IF-2	29	5.4
29	PANK1_HUMAN (Q8TE04) Pantothenate kinase 1 (EC 2.7.1.33) (Pantot...	29	5.4
30	PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-pho...	29	7.1
31	SODC_MYCPA (Q9AGW2) Superoxide dismutase [Cu-Zn] precursor (EC 1...	29	7.1
32	PLS_STAES (Q8CQD9) Accumulation-associated protein precursor	29	7.1
33	IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2	28	9.2
34	RL15_SHIFL (P66075) 50S ribosomal protein L15	28	9.2
35	RL15_SALTY (P66073) 50S ribosomal protein L15	28	9.2
36	RL15_SALTI (P66074) 50S ribosomal protein L15	28	9.2
37	RL15_SALPA (Q5PK03) 50S ribosomal protein L15	28	9.2
38	RL15_SALCH (Q57J51) 50S ribosomal protein L15	28	9.2
39	RL15_PHOLL (Q7MYH0) 50S ribosomal protein L15	28	9.2
40	RL15_PASMU (Q9CL49) 50S ribosomal protein L15	28	9.2
41	RL15_MANSM (Q65QX4) 50S ribosomal protein L15	28	9.2
42	RL15_HAEIN (P44353) 50S ribosomal protein L15	28	9.2
43	RL15_HAEDU (Q7VKF2) 50S ribosomal protein L15	28	9.2
44	RL15_ECOLI (P02413) 50S ribosomal protein L15	28	9.2
45	RL15_ECOL6 (P66071) 50S ribosomal protein L15	28	9.2
46	RL15_ECO57 (P66072) 50S ribosomal protein L15	28	9.2
47	SYTL4_HUMAN (Q96C24) Synaptotagmin-like protein 4 (Exophilin-2) ...	28	9.2
48	MASY_STRAE (P77947) Malate synthase (EC 2.3.3.9)	28	9.2
49	NELFA_DROME (Q86NP2) Negative elongation factor A homolog	28	9.2
50	MYPT1_HUMAN (O14974) Protein phosphatase 1 regulatory subunit 12...	28	9.2

>RHO_MYCTU (P66028) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 602

 Score = 35.8 bits (81), Expect = 0.058
 Identities = 24/52 (46%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 37  RTNDADDHGSGDGQADGREDHRG--DAEARGGPHRRRLRDPQVPAVRRRRGD 186
           R  DA     GD QA G +  RG  D EAR G   RR RD      RRRRG+
Sbjct: 162 RGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRD------RRRRGE 207

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>RHO_MYCBO (P66029) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 602

 Score = 35.8 bits (81), Expect = 0.058
 Identities = 24/52 (46%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 37  RTNDADDHGSGDGQADGREDHRG--DAEARGGPHRRRLRDPQVPAVRRRRGD 186
           R  DA     GD QA G +  RG  D EAR G   RR RD      RRRRG+
Sbjct: 162 RGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRD------RRRRGE 207

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>ZF64A_HUMAN (Q9NPA5) Zinc finger protein 64, isoforms 1 and 2 (Zinc finger|
           protein 338)
          Length = 681

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
 Frame = +2

Query: 26  EPSVEQTTPTTMGLAMAKLMVG----------KIIV--ETPKHEVVHTGDGYEIRKYPPC 169
           +PS +  TP T+G     L             KIIV  + P+   +       +   PP 
Sbjct: 466 DPSKQPATPLTVGHLQVPLQPSQVPQFSEGRVKIIVGHQVPQANTIVQAAAAAVNIVPPA 525

Query: 170 VAAEVTYDPKEMKGDRDGGFQVLANYIGAFGKPQNTK-PAEAIAMTAPVITSSSSGSGEA 346
           + A+   +P+E+ G+     Q+L   +     PQ+++ P+EA AMT P +  ++    + 
Sbjct: 526 LVAQ---NPEELPGN--SRLQILRQ-VSLIAPPQSSRCPSEAGAMTQPAVLLTTHEQTDG 579

Query: 347 EPIAMTAPVITSSEPEPVAMTVPVLTAEG 433
             +  T     S  P+  +     +T+ G
Sbjct: 580 ATLHQTLIPTASGGPQEGSGNQTFITSSG 608

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>ASX_DROME (Q9V727) Polycomb protein Asx (Additional sex combs)|
          Length = 1669

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
 Frame = -1

Query: 474  AAELHRHLPVCSSRPSAVR-----TGTVMATGSGSEEVITGAVMAIGSASP----LPEEE 322
            AA L++H P  ++ P+ +        TV AT   +    TG++ A  +A+P    L +EE
Sbjct: 1278 AAILNQHQPTTTTAPAPINPVTLNVSTVAATPMSNITTATGSMAAAVAAAPPQNVLKQEE 1337

Query: 321  EVMTGAVMAIASAGLVFCGLPKAPM*LAR 235
             +++GAV     AG +  GLP   M + R
Sbjct: 1338 LLVSGAV----GAGALPAGLPPNVMGVGR 1362

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>HEMH_MYCAV (O07401) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme|
           synthetase)
          Length = 335

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 73  GQADGREDHRGDAEARGGPHRRRL-RDPQVPAVRRRRGD 186
           G AD R   R D  A G P   RL R PQ+ A+RRR G+
Sbjct: 50  GVADQRHQPRADRAAAGRPEPARLLRQPQLGALRRRHGE 88

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>HEBP2_HUMAN (Q9Y5Z4) Heme-binding protein 2 (Protein SOUL) (Placental protein|
           23) (PP23)
          Length = 205

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
 Frame = +2

Query: 143 YEIRKYPPCVAAEVTYDPKEMKGDRDGGFQVLANYIGAFGKPQNTKPAEAIAMTAPVITS 322
           YEIR Y P      + +  +       GF  L +YI    + +N K  + I MTAPV + 
Sbjct: 38  YEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYI----QGKNEKEMK-IKMTAPVTSY 92

Query: 323 SSSGSGEAEPIAMTAPVITSSE-----PEPVAMTVPVLTAEGREEQT 448
              GSG      +T  +   SE     P P+   V +   E R E T
Sbjct: 93  VEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFI---EDRAEMT 136

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>ADRM1_MOUSE (Q9JKV1) Adhesion-regulating molecule 1 precursor (110 kDa cell|
           membrane glycoprotein) (Gp110) (ARM-1)
          Length = 407

 Score = 32.0 bits (71), Expect = 0.83
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 236 LANYIGAFGKPQNTKPAEAIAMTAPVITSSSSGSGEAEPIAMTAPVITSSEPEP 397
           LA+ +G+ G P ++  + + + +A V  SSS+ S  A P        +++ P P
Sbjct: 191 LASLLGSSGPPASSSSSSSRSQSAAVTPSSSTSSARATPAPSAPAAASATSPSP 244

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>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5|
           (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f)
          Length = 361

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +2

Query: 266 PQNTKPAEAIAMTAPVITSSSSGSGEAEPIAMTAPVITSSEPEPVAMTVPVLTAEGREEQ 445
           P N  PA A A  APV+T++ + +      A T     ++ P PV+ + P + A     Q
Sbjct: 7   PANVPPATAAAAPAPVVTAAPASAPTPSTPAPTPAATPAASPAPVS-SDPAVAAPAAPGQ 65

Query: 446 T 448
           T
Sbjct: 66  T 66

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>GRA6_TOXGO (Q27003) Dense granule protein 6 (Protein GRA 6) (Antigen p32)|
           (Protein p33)
          Length = 230

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
 Frame = +2

Query: 221 GGFQVLANYIGAFGKPQNTKPA----EAIAMTAPVITSSSSGSGEAEPIAMTAPVITSSE 388
           GG  V A+  G    P  T  +    EA+  T   + SS+ G G+ + +A      TS  
Sbjct: 38  GGVAVAADSGGVKQTPSETGSSGGQQEAVGTTEDYVNSSAMGGGQGDSLA--EDDTTSEA 95

Query: 389 PEPVAMTVPVLTAEGREEQTG 451
            E      PVL  EG+ E  G
Sbjct: 96  AEGDVDPFPVLANEGKSEARG 116

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>LRC50_HUMAN (Q8NEP3) Leucine-rich repeat-containing protein 50|
          Length = 725

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 263 KPQNTKPAEAIAMTAPVITSSSSGSGEAEPIAMTAPVITSSEPEPV 400
           +P+ T PAE + +++PV      G GE E    T P      P PV
Sbjct: 411 EPEGTLPAETLLLSSPVEVKGEDGDGEPEG---TLPAEAPPPPPPV 453



 Score = 28.5 bits (62), Expect = 9.2
 Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
 Frame = +2

Query: 194 PKEMKGDRDGGFQVLANYIGAFGKPQNTKPAEAIAMTAPVITSSSSGSGE------AEPI 355
           P E+KG+ DG            G+P+ T PAEA     PV      G  E      AE +
Sbjct: 426 PVEVKGE-DGD-----------GEPEGTLPAEAPPPPPPVEVKGEDGDQEPEGTLPAETL 473

Query: 356 AMTAPVITSS-----EPE---PVAMTVPVLTAEGREEQT 448
            ++ PV         EPE   P     P+     REE T
Sbjct: 474 LLSPPVKVKGEDGDREPEGTLPAEAPPPLPLGAAREEPT 512

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>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1214

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 474  AAELHRHLPVCSSRPSAVRTGTVMATGSGSEEVITGAVMA--IGSASPLPE 328
            A  LH +LP  ++ PS++  G  + + +     I  AV    + SASPLP+
Sbjct: 1140 ANPLHPNLPATTTMPSSLPLGPGLGSAAAQSPAIVAAVQGNLLPSASPLPD 1190

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>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1213

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 474  AAELHRHLPVCSSRPSAVRTGTVMATGSGSEEVITGAVMA--IGSASPLPE 328
            A  LH +LP  ++ PS++  G  + + +     I  AV    + SASPLP+
Sbjct: 1139 ANPLHPNLPATTTMPSSLPLGPGLGSAAAQSPAIVAAVQGNLLPSASPLPD 1189

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>TNR8_HUMAN (P28908) Tumor necrosis factor receptor superfamily member 8|
           precursor (CD30L receptor) (Lymphocyte activation
           antigen CD30) (KI-1 antigen)
          Length = 595

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = +2

Query: 158 YPPCVAAEVTYDPKEMKGDRDGGFQV--LANYIGAFGKPQNTKPAEAIAMTAPVITSSSS 331
           YP C A  VT  P++M  ++D  F+   L         P+N +   + + T  ++  S +
Sbjct: 303 YPICAAETVT-KPQDM-AEKDTTFEAPPLGTQPDCNPTPENGEAPASTSPTQSLLVDSQA 360

Query: 332 GSGEAEPIAMTAPVITSSEPEPVAMTVPVL 421
              +  PI  +APV  SS  +PV    PVL
Sbjct: 361 S--KTLPIPTSAPVALSSTGKPVLDAGPVL 388

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>NDF4_XENLA (P79920) Neurogenic differentiation factor 4 (NeuroD4) (Atonal|
           protein homolog 3) (Helix-loop-helix protein xATH-3)
           (XATH3)
          Length = 315

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 52  DDHGSGDGQADGREDHRGDAEARGGPHRRRLRDPQVPAVRRRR 180
           ++ GS DG+ D  E+  G+   + GP ++++   +V   R RR
Sbjct: 38  EERGSIDGEEDDEEEEDGEKPKKRGPKKKKMTKARVERFRVRR 80

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>IF2_BORBR (Q7WHG2) Translation initiation factor IF-2|
          Length = 997

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 263 KPQNTKPAEAIAMTAPVITSSSSGSGEAEPIAMTAPVITSSEPEPVAMTVPVLTAEGRE 439
           +PQ+ +PA+A A   P   + +    + EP    AP    +EP   A  V V   E  +
Sbjct: 162 EPQSEQPAQAEAQPEPTPAAQAEPEPQPEPQPEAAPAQAVAEPVEPAKNVSVTETEAEQ 220

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>RDRP_TCV (P17460) Probable RNA-directed RNA polymerase (EC 2.7.7.48)|
           (Protein p88) [Contains: Protein p28]
          Length = 775

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -1

Query: 390 GSEEVITGAVM-AIGSASPLPEEEEVMTG--AVMAIASAGLVFCGLPK 256
           G+EE  T  ++ A+GS + +P       G  A+ A+ +A L FCG+PK
Sbjct: 96  GTEEEATSCLVEAVGSTADVPRRRVRQKGRFAMHAVNAAKLHFCGVPK 143

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>AN32A_RAT (P49911) Acidic leucine-rich nuclear phosphoprotein 32 family|
           member A (Leucine-rich acidic nuclear protein)
          Length = 247

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 46  DADDHGSGDGQADGREDHRGDAEARGGPHRRRLRDPQ 156
           + D+ G  DG+ D  ED    AE  G   R+R  D +
Sbjct: 206 EEDEEGYNDGEVDDEEDEEDAAEEEGSQKRKREPDDE 242

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>CS021_HUMAN (Q8IVT2) Protein C19orf21|
          Length = 679

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 251 GAFGKPQNTKPAEAIAMTAPVITSSSSGSGEAEPIAMTAPVITSSEP 391
           GAFGKP +   AEA A T+P  T S     E+    ++     S  P
Sbjct: 442 GAFGKPSSLSTAEAKAATSPKATMSPRHLSESSGKPLSTKQEASKPP 488

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>IF2_BORPA (Q7W9A5) Translation initiation factor IF-2|
          Length = 969

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 263 KPQNTKPAEAIAMTAPVITSSSSGSGEAEPIAMTAPVITSSEPEPVAMTVPVLTAEGRE 439
           +PQ  +PA+A A   P   + +    + EP    AP    +EP   A  V V   E  +
Sbjct: 134 EPQPEQPAQAEAQPEPTPAAQAEPEPQPEPQPEAAPAQAVAEPVEPAKNVSVTETEAEQ 192

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>IF2_BORPE (Q7VYR2) Translation initiation factor IF-2|
          Length = 997

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 263 KPQNTKPAEAIAMTAPVITSSSSGSGEAEPIAMTAPVITSSEPEPVAMTVPVLTAEGRE 439
           +PQ  +PA+A A   P   + +    + EP    AP    +EP   A  V V   E  +
Sbjct: 162 EPQPEQPAQAEAQPEPTPAAQAEPEPQPEPQPEAAPAQAVAEPVEPAKNVSVTETEAEQ 220

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>PMP20_CHLPN (Q9Z812) Probable outer membrane protein pmp20 precursor|
           (Polymorphic membrane protein 20)
          Length = 1723

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +2

Query: 287 EAIAMTAPVITSSSSGSGEAEPIAMTAPVITSSE 388
           +A + TAPV++SS++ +  A P A  APV  +++
Sbjct: 534 KAASNTAPVVSSSTTAASPAVPAAAAAPVTNAAK 567

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>ANLN_XENLA (Q801E2) Actin-binding protein anillin|
          Length = 1116

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
 Frame = +2

Query: 275 TKPAEAIAMTAPVITSSSSGSGEAEPIAMTAPVITSSEPE----PVAMTVPVLTAEGREE 442
           +KPA ++A        S+  SG+++P+A+ +P + +S+P     P + ++  ++A    +
Sbjct: 275 SKPASSVA--------STEVSGKSKPLAIKSPAVVTSKPNENVLPASSSLKPVSANSSPQ 326

Query: 443 QTGR 454
           +T R
Sbjct: 327 KTER 330

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>RL15_BUCAK (P46185) 50S ribosomal protein L15|
          Length = 144

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  GSGDGQADGREDHRGDAEARGGPHRRRLRDPQVPAVRR 174
           GSG G+  GR  H+G     GG  RR     Q+P  RR
Sbjct: 24  GSGLGKTGGR-GHKGQKSRSGGGVRRGFEGGQIPLYRR 60

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>YHT1_YEAST (P38835) PH domain protein YHR131C|
          Length = 850

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 40  TNDADDHGSGDGQADGREDHRGD 108
           T DA+DHG  DG  D  ED   D
Sbjct: 794 TKDAEDHGEDDGDGDDGEDDDDD 816

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>MCL1_CANFA (Q8HYS5) Induced myeloid leukemia cell differentiation protein|
           Mcl-1 homolog
          Length = 350

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 22/97 (22%), Positives = 40/97 (41%)
 Frame = +2

Query: 161 PPCVAAEVTYDPKEMKGDRDGGFQVLANYIGAFGKPQNTKPAEAIAMTAPVITSSSSGSG 340
           PPC A+     P+EM+G            +  + +P+      A+     ++  +SSG G
Sbjct: 101 PPCRASP----PEEMEGPAADAIMSPEEELDGY-EPEPLGKRPAVLPLLELVGEASSGPG 155

Query: 341 EAEPIAMTAPVITSSEPEPVAMTVPVLTAEGREEQTG 451
               +  T P     E E    ++ +++   RE+ TG
Sbjct: 156 MDGSLPSTPPPAEEEEDELYRQSLEIISRYLREQATG 192

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>IF2_DEIRA (Q9RTG5) Translation initiation factor IF-2|
          Length = 597

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 18/82 (21%), Positives = 36/82 (43%)
 Frame = +2

Query: 197 KEMKGDRDGGFQVLANYIGAFGKPQNTKPAEAIAMTAPVITSSSSGSGEAEPIAMTAPVI 376
           K++  D     ++L     ++    +T   E + +   ++   ++  G+A P A +AP  
Sbjct: 11  KDLGVDNHKMLEILDGLGVSYKSVSSTIDEENVEIIKQILADEAAEGGDAAPAAASAPAA 70

Query: 377 TSSEPEPVAMTVPVLTAEGREE 442
            ++EPE    T P   A+   E
Sbjct: 71  ATAEPEEADET-PAAAAQADAE 91

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>TNNI3_CAEEL (Q9XUN9) Troponin I 3 (TnI 3)|
          Length = 260

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 341 EAEPIAMTAPVITSSEPEPVAMTVPVLTAEGREEQ 445
           EA P+ + APV   +EPEP A        E  EE+
Sbjct: 219 EAAPVELAAPVEPEAEPEPEAAEPAAEEPEAEEEE 253

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>IF2_PSEPK (Q88DV7) Translation initiation factor IF-2|
          Length = 846

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 29/141 (20%), Positives = 59/141 (41%)
 Frame = +2

Query: 32  SVEQTTPTTMGLAMAKLMVGKIIVETPKHEVVHTGDGYEIRKYPPCVAAEVTYDPKEMKG 211
           ++++ T +T+ +A +K     I VE  K +V        +++ P  + AE   +  E + 
Sbjct: 65  TLQRKTTSTLRVAGSK----SISVEVRKKKVF-------VQRSPEEIQAEQKRELDERRA 113

Query: 212 DRDGGFQVLANYIGAFGKPQNTKPAEAIAMTAPVITSSSSGSGEAEPIAMTAPVITSSEP 391
             +     +   +    + Q  + A   A  AP   +    +  A P+A  APV+  +  
Sbjct: 114 AENAARDKVEAEVRQRNEEQARRQAAGSAAAAPAPAAKPEPAPAAAPVAAPAPVVADA-- 171

Query: 392 EPVAMTVPVLTAEGREEQTGR 454
            P +       AE ++++T R
Sbjct: 172 -PASEDAAARAAERKKDETRR 191

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>PANK1_HUMAN (Q8TE04) Pantothenate kinase 1 (EC 2.7.1.33) (Pantothenic acid|
           kinase 1) (hPanK1) (hPanK)
          Length = 598

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 73  GQADGREDHRGDAEARGGPHRRRLRDPQVPAVR 171
           G A G +      E+ GG   RR+R PQ PA+R
Sbjct: 68  GPARGGQGAEEVGESAGGGEERRVRHPQAPALR 100

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>PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC|
           3.1.3.56)
          Length = 1006

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
 Frame = -1

Query: 450 PVCSSRPSAVRTGTVMATGSGSEEVITGAVMAIGSASPLPEEEEVMTGAVMAIASAGLVF 271
           P+C+  P   +T T   + S +   +   VM   SAS  P+     TG+V+A  S GLV 
Sbjct: 88  PLCT--PEGQKTATAHRSSSLAPTSVGQLVM---SASAGPKPPPATTGSVLAPTSLGLVM 142

Query: 270 ---CGLPKAPM*LARTWNPPSR----SPFISLGS*VTSAAT 169
               G    P+ L     P SR     P  S+G   T AA+
Sbjct: 143 PASAGPRSPPVTLGPNLAPTSRDQKQEPPASVGPKPTLAAS 183

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>SODC_MYCPA (Q9AGW2) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)|
          Length = 227

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +2

Query: 233 VLANYIGAFGKPQNTKPAEAIAMTAPVITSSS---SGSGEAEPIAMTAPVITSSEPEP 397
           VLA  + A G   + + A ++  T P + + S   SG+G AE     AP IT+    P
Sbjct: 9   VLAGCVVALGACSSPQHASSLPGTTPAVWTGSPSPSGAGAAEAAPAAAPSITTHLKAP 66

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>PLS_STAES (Q8CQD9) Accumulation-associated protein precursor|
          Length = 1469

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
 Frame = +2

Query: 44   TTPTTMG-LAMAKLMVGKI---IVETPKHEVVHTGDGYEIRKYPPCVAAEVTYDPKEMKG 211
            TTPTT   L   K+  G+    I + P  E+VH G G EI+        +  +DP   KG
Sbjct: 747  TTPTTKNPLTGEKVGEGEPTEKITKQPVDEIVHYG-GEEIKP-----GHKDEFDPNAPKG 800

Query: 212  DRDGGFQVLANYIGAFGKPQNTKPAEAIAMTAPVITSSSSGSGEAEPIAMTAPV 373
             ++             GKP    P     +T PV   +  G  + +PI  T  +
Sbjct: 801  SQED----------VPGKPGVKNPDTGEVVTPPVDDVTKYGPVDGDPITSTEEI 844



 Score = 28.5 bits (62), Expect = 9.2
 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
 Frame = +2

Query: 44   TTPTTMG-LAMAKLMVGKI---IVETPKHEVVHTGDGYEIRKYPPCVAAEVTYDPKEMKG 211
            TTPTT   L   K+  G+    + + P  E+VH G G EI+        +  +DP   KG
Sbjct: 875  TTPTTKNPLTGEKVGEGEPTEKVTKQPVDEIVHYG-GEEIKP-----GHKDEFDPNAPKG 928

Query: 212  DRDGGFQVLANYIGAFGKPQNTKPAEAIAMTAPVITSSSSGSGEAEPIAMTAPV 373
             ++             GKP    P     +T PV   +  G  + +PI  T  +
Sbjct: 929  SQED----------VPGKPGVKNPDTGEVVTPPVDDVTKYGPVDGDPITSTEEI 972

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>IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2|
          Length = 959

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 73  GQADGREDHRGDAEARGGPHRRRLRDPQVPAVR--RRRGDL 189
           GQ+D  +D R DA  RG   +  +R P+V      RRRG L
Sbjct: 297 GQSDDDDDRRSDAARRGVAAKPEVRAPKVVKGEDDRRRGKL 337

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>RL15_SHIFL (P66075) 50S ribosomal protein L15|
          Length = 144

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  GSGDGQADGREDHRGDAEARGGPHRRRLRDPQVPAVRR 174
           GSG G+  GR  H+G     GG  RR     Q+P  RR
Sbjct: 24  GSGLGKTGGR-GHKGQKSRSGGGVRRGFEGGQMPLYRR 60

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>RL15_SALTY (P66073) 50S ribosomal protein L15|
          Length = 144

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  GSGDGQADGREDHRGDAEARGGPHRRRLRDPQVPAVRR 174
           GSG G+  GR  H+G     GG  RR     Q+P  RR
Sbjct: 24  GSGLGKTGGR-GHKGQKSRSGGGVRRGFEGGQMPLYRR 60

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>RL15_SALTI (P66074) 50S ribosomal protein L15|
          Length = 144

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  GSGDGQADGREDHRGDAEARGGPHRRRLRDPQVPAVRR 174
           GSG G+  GR  H+G     GG  RR     Q+P  RR
Sbjct: 24  GSGLGKTGGR-GHKGQKSRSGGGVRRGFEGGQMPLYRR 60

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>RL15_SALPA (Q5PK03) 50S ribosomal protein L15|
          Length = 144

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  GSGDGQADGREDHRGDAEARGGPHRRRLRDPQVPAVRR 174
           GSG G+  GR  H+G     GG  RR     Q+P  RR
Sbjct: 24  GSGLGKTGGR-GHKGQKSRSGGGVRRGFEGGQMPLYRR 60

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>RL15_SALCH (Q57J51) 50S ribosomal protein L15|
          Length = 144

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  GSGDGQADGREDHRGDAEARGGPHRRRLRDPQVPAVRR 174
           GSG G+  GR  H+G     GG  RR     Q+P  RR
Sbjct: 24  GSGLGKTGGR-GHKGQKSRSGGGVRRGFEGGQMPLYRR 60

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>RL15_PHOLL (Q7MYH0) 50S ribosomal protein L15|
          Length = 144

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  GSGDGQADGREDHRGDAEARGGPHRRRLRDPQVPAVRR 174
           GSG G+  GR  H+G     GG  RR     Q+P  RR
Sbjct: 24  GSGLGKTGGR-GHKGQKSRSGGGVRRGFEGGQMPLYRR 60

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>RL15_PASMU (Q9CL49) 50S ribosomal protein L15|
          Length = 144

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  GSGDGQADGREDHRGDAEARGGPHRRRLRDPQVPAVRR 174
           GSG G+  GR  H+G     GG  RR     Q+P  RR
Sbjct: 24  GSGLGKTGGR-GHKGQKSRTGGGVRRGFEGGQMPLYRR 60

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>RL15_MANSM (Q65QX4) 50S ribosomal protein L15|
          Length = 144

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  GSGDGQADGREDHRGDAEARGGPHRRRLRDPQVPAVRR 174
           GSG G+  GR  H+G     GG  RR     Q+P  RR
Sbjct: 24  GSGLGKTGGR-GHKGQKSRTGGGVRRGFEGGQMPLYRR 60

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>RL15_HAEIN (P44353) 50S ribosomal protein L15|
          Length = 144

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  GSGDGQADGREDHRGDAEARGGPHRRRLRDPQVPAVRR 174
           GSG G+  GR  H+G     GG  RR     Q+P  RR
Sbjct: 24  GSGLGKTGGR-GHKGQKSRTGGGVRRGFEGGQMPLYRR 60

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>RL15_HAEDU (Q7VKF2) 50S ribosomal protein L15|
          Length = 144

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  GSGDGQADGREDHRGDAEARGGPHRRRLRDPQVPAVRR 174
           GSG G+  GR  H+G     GG  RR     Q+P  RR
Sbjct: 24  GSGLGKTGGR-GHKGQKSRTGGGVRRGFEGGQMPLYRR 60

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>RL15_ECOLI (P02413) 50S ribosomal protein L15|
          Length = 144

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  GSGDGQADGREDHRGDAEARGGPHRRRLRDPQVPAVRR 174
           GSG G+  GR  H+G     GG  RR     Q+P  RR
Sbjct: 24  GSGLGKTGGR-GHKGQKSRSGGGVRRGFEGGQMPLYRR 60

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>RL15_ECOL6 (P66071) 50S ribosomal protein L15|
          Length = 144

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  GSGDGQADGREDHRGDAEARGGPHRRRLRDPQVPAVRR 174
           GSG G+  GR  H+G     GG  RR     Q+P  RR
Sbjct: 24  GSGLGKTGGR-GHKGQKSRSGGGVRRGFEGGQMPLYRR 60

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>RL15_ECO57 (P66072) 50S ribosomal protein L15|
          Length = 144

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  GSGDGQADGREDHRGDAEARGGPHRRRLRDPQVPAVRR 174
           GSG G+  GR  H+G     GG  RR     Q+P  RR
Sbjct: 24  GSGLGKTGGR-GHKGQKSRSGGGVRRGFEGGQMPLYRR 60

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>SYTL4_HUMAN (Q96C24) Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)|
          Length = 671

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +2

Query: 89  GKIIVETPKHEVVHTGDGYEIRKYPPCVAAEVTYDPKEMKGDRDGGFQV 235
           GKI  E+P     H G+     KY P     V  D K+ KG   G  QV
Sbjct: 482 GKISAESPTGLPSHKGELVVSLKYIPASKTPVGGDRKKSKGGEGGELQV 530

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>MASY_STRAE (P77947) Malate synthase (EC 2.3.3.9)|
          Length = 543

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 360 MAIGSASPLPEEEEVMTGAVMAIAS 286
           +AI  A PLP +EEV+T A +A  +
Sbjct: 9   LAIVDAEPLPRQEEVLTDAALAFVA 33

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>NELFA_DROME (Q86NP2) Negative elongation factor A homolog|
          Length = 1248

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 4/140 (2%)
 Frame = +2

Query: 11  RTTSAEPSVEQTTPTTMGLAMAKLMVGKIIVETPKHEVVHTGDGYEIRKYPPCVAAEVTY 190
           R T   PS    T TT+            +   P +  V         K     AA  T 
Sbjct: 521 RATGVSPSTSVGTTTTLLTPQQLRQAANPLANLPNNISVKITSA----KAKAAAAAAATS 576

Query: 191 DPKEMKGDRDGGFQVLANYIGAFGKPQNTKPAEAIAMTAPVITSSSSGSGEAEPIAM--- 361
              + +  +    QV          PQ + P   I  + PVI +SS  +  A+ +A+   
Sbjct: 577 SGSQTQSQQPQTLQVQQ-------APQQSHPPLLINSSTPVILASSPSAQRAKALALPSS 629

Query: 362 -TAPVITSSEPEPVAMTVPV 418
            T+   T++ P     T+P+
Sbjct: 630 STSATTTTTIPSQAIKTMPL 649

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>MYPT1_HUMAN (O14974) Protein phosphatase 1 regulatory subunit 12A (Myosin|
           phosphatase-targeting subunit 1) (Myosin phosphatase
           target subunit 1) (Protein phosphatase myosin-binding
           subunit)
          Length = 1030

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = +2

Query: 314 ITSSSSGSGEAEPIAMTAPVITSSEPEPVA 403
           +T++++ S +A P+A+T P ++S +  P +
Sbjct: 380 VTNANTSSTQAAPVAVTTPTVSSGQATPTS 409


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,738,873
Number of Sequences: 219361
Number of extensions: 840656
Number of successful extensions: 4278
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 3944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4268
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result