Clone Information

BLAST Search Result

Clone Name	baet66e04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)	67	2e-11
2	ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor	67	3e-11
3	ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur...	66	4e-11
4	ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur...	57	2e-08
5	ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro...	46	5e-05
6	ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur...	45	9e-05
7	ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec...	44	2e-04
8	ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec...	43	3e-04
9	ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur...	42	6e-04
10	ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur...	40	0.004
11	ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor	37	0.025
12	CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcrip...	35	0.093
13	RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch...	34	0.21
14	RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-ri...	34	0.21
15	RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri...	32	0.61
16	DND1_MOUSE (Q6VY05) Dead end protein homolog 1 (RNA-binding moti...	32	0.79
17	RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15	32	0.79
18	G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protei...	32	1.0
19	G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protei...	32	1.0
20	CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit...	31	1.3
21	CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit...	31	1.3
22	CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit...	31	1.3
23	KSGA_METCA (Q60B77) Dimethyladenosine transferase (EC 2.1.1.-) (...	31	1.3
24	ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 ...	31	1.8
25	CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit...	30	2.3
26	G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protei...	30	2.3
27	CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit...	30	2.3
28	G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protei...	30	2.3
29	CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit...	30	2.3
30	RNP1_CAEEL (Q10667) RNA-binding protein rnp-1	30	3.0
31	DND1_HUMAN (Q8IYX4) Dead end protein homolog 1 (RNA-binding moti...	30	3.0
32	MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)	30	3.0
33	PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein	30	3.0
34	MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)	30	3.0
35	NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NO...	30	3.9
36	NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding pr...	30	3.9
37	NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2	30	3.9
38	HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)	30	3.9
39	NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding prot...	30	3.9
40	NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding pr...	30	3.9
41	NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding pr...	30	3.9
42	KSGA_PSEPK (Q88QT6) Dimethyladenosine transferase (EC 2.1.1.-) (...	29	5.1
43	SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9	29	5.1
44	ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1 (...	29	5.1
45	SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9	29	5.1
46	SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pr...	29	5.1
47	ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1 (He...	29	5.1
48	ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1 (...	29	5.1
49	ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1 (...	29	5.1
50	CPB1_CAEEL (Q03571) Cytoplasmic polyadenylation element-binding ...	29	5.1
51	CASC3_HUMAN (O15234) Protein CASC3 (Cancer susceptibility candid...	29	5.1
52	ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1 (...	29	5.1
53	CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (C...	29	5.1
54	CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (C...	29	5.1
55	HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn...	29	6.7
56	KSGA_XYLFA (Q9PBJ6) Dimethyladenosine transferase (EC 2.1.1.-) (...	29	6.7
57	HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (...	29	6.7
58	HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (...	29	6.7
59	PHP_DROME (P39769) Polyhomeotic-proximal chromatin protein	29	6.7
60	SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a...	29	6.7
61	RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif pro...	28	8.7
62	DMDB_DROME (Q9VDW3) Dystrophin, isoform B	28	8.7
63	DMDA_DROME (Q9VDW6) Dystrophin, isoforms A/C/DLP1/DLP3	28	8.7
64	CPB1_CAEJA (Q6E3C7) Cytoplasmic polyadenylation element-binding ...	28	8.7
65	CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-r...	28	8.7
66	CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine...	28	8.7
67	CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine...	28	8.7
68	CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine...	28	8.7
69	CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine...	28	8.7
70	PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein	28	8.7
71	CPB1_CAEBR (Q6E3D0) Cytoplasmic polyadenylation element-binding ...	28	8.7
72	PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bi...	28	8.7

>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 32/44 (72%), Positives = 39/44 (88%)
 Frame = +1

Query: 331 GDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           G  G++ EPPEEAK++VGNLPYDVDSE+LA +FD AGVVE+AEV
Sbjct: 44  GGQGFS-EPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEV 86



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           +VYVGNLP+DVD+ RL QLF + G V  A V
Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARV 180

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>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 30/37 (81%), Positives = 36/37 (97%)
 Frame = +1

Query: 352 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           EPPE+AK++VGNLPYDVDSE LA+LF+QAGVVE+AEV
Sbjct: 131 EPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEV 167



 Score = 35.8 bits (81), Expect = 0.055
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           ++YVGN+P+ +D  RL QLF + G V  A V
Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARV 261

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>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 33/47 (70%), Positives = 39/47 (82%), Gaps = 3/47 (6%)
 Frame = +1

Query: 331 GDAGYTAE---PPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           G+AG T E   P E+AK++VGNLPYD+DSE LAQLF QAGVVE+AEV
Sbjct: 82  GEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEV 128



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           ++YVGN+P+D+D  RL Q+F + G V  A V
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARV 222

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>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 26/37 (70%), Positives = 32/37 (86%)
 Frame = +1

Query: 352 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           EP EEAK++VGNL YDV+S+ LA LF+QAG VE+AEV
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEV 181



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           +VYVGNLP+DVD+ RL QLF + G V  A V
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARV 275

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>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 23/42 (54%), Positives = 31/42 (73%), Gaps = 6/42 (14%)
 Frame = +1

Query: 355 PPEEA------KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           PP+E       K++VGNLP++VDS +LAQLF+ AG VE+ EV
Sbjct: 81  PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEV 122



 Score = 30.0 bits (66), Expect = 3.0
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           +VYVGNL + VD   L  LF + G V  A V
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARV 235

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>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 23/41 (56%), Positives = 30/41 (73%), Gaps = 3/41 (7%)
 Frame = +1

Query: 349 AEPP---EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           AE P   E+ K++VGNLP+ VDS  LA LF++AG VE+ EV
Sbjct: 79  AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEV 119



 Score = 30.0 bits (66), Expect = 3.0
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           +VYVGNL + VD   L +LF + G V  A+V
Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKV 239

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>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 23/41 (56%), Positives = 30/41 (73%), Gaps = 3/41 (7%)
 Frame = +1

Query: 349 AEPP---EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           AE P   E+ K++VGNLP+ VDS  LA LF++AG VE+ EV
Sbjct: 78  AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEV 118



 Score = 30.0 bits (66), Expect = 3.0
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           +VYVGNL + VD   L +LF + G V  A+V
Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKV 238

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>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
 Frame = +1

Query: 331 GDAGYTAEP--PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           GD G   E     + K++VGNLP+  DS  LA+LF++AG VE+ EV
Sbjct: 73  GDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEV 118



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           +VYVGNL + VD + L  LF + G V  A+V
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKV 219

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>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = +1

Query: 364 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           + K++VGNL ++VDS +LAQLF+ AG VE+ EV
Sbjct: 98  DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEV 130



 Score = 29.3 bits (64), Expect = 5.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           ++YVGNL + VD   L  LF++ G V  A V
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARV 288

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>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = +1

Query: 331 GDAGYTAEP--PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           GD G   E     + K++VGNL +  DS  LA+LF++AG VE+ EV
Sbjct: 73  GDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEV 118



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           +VYVGNL + VD + L  LF + G V  A+V
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKV 225

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>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 15/38 (39%), Positives = 26/38 (68%)
 Frame = +1

Query: 349 AEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           +E  E  ++YVGNLP+ + S +L+++F +AG V   E+
Sbjct: 108 SESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEI 145

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>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription|
           termination factor ctf1)
          Length = 363

 Score = 35.0 bits (79), Expect = 0.093
 Identities = 12/26 (46%), Positives = 21/26 (80%)
 Frame = +1

Query: 373 VYVGNLPYDVDSERLAQLFDQAGVVE 450
           V+VGN+PYDV  +++ ++F+Q G V+
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQVGPVK 34

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>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 13/46 (28%), Positives = 29/46 (63%)
 Frame = +1

Query: 325 SGGDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           S   A  +++     ++YVGN+P +++++ L  + ++ G +E+AEV
Sbjct: 70  SSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEV 115

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>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6|
           (RNA-binding protein srp-1) (CeSRp20)
          Length = 179

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +1

Query: 364 EAKVYVGNLPYDVDSERLAQLFDQAG 441
           +AKVYVG LP D  S+ L ++FD+ G
Sbjct: 2   DAKVYVGGLPSDATSQELEEIFDRFG 27

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>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 32.3 bits (72), Expect = 0.61
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           E+ KVYVGNLP DV  + +  +F + G ++  ++
Sbjct: 7   EDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI 40

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>DND1_MOUSE (Q6VY05) Dead end protein homolog 1 (RNA-binding motif,|
           single-stranded interacting protein 4)
          Length = 352

 Score = 32.0 bits (71), Expect = 0.79
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 355 PPEEAKVYVGNLPYDVDSERLAQLFDQAG 441
           PP  ++VY+G LP DV   +L  LF + G
Sbjct: 54  PPSGSEVYIGRLPQDVYEHQLIPLFQRVG 82

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>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15|
          Length = 296

 Score = 32.0 bits (71), Expect = 0.79
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 325 SGGDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVV 447
           SG +AG    PP    VY+G++PYD   E++  L    G V
Sbjct: 5   SGVNAGVQNNPPSRV-VYLGSIPYDQTEEQILDLCSNVGPV 44

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>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP|
           SH3-domain-binding protein 2) (G3BP-2)
          Length = 482

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 358 PEEAKVYVGNLPYDVDSERLAQLFDQAG-VVEV 453
           P+  +++VGNLP+D+D   L + F   G VVE+
Sbjct: 328 PDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 360

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>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP|
           SH3-domain-binding protein 2) (G3BP-2)
          Length = 482

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 358 PEEAKVYVGNLPYDVDSERLAQLFDQAG-VVEV 453
           P+  +++VGNLP+D+D   L + F   G VVE+
Sbjct: 328 PDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 360

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>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +1

Query: 337 AGYTAEPPEEAK----VYVGNLPYDVDSERLAQLFDQAGVV 447
           AG T   P   +    V+VGN+PY+   E+L  +F + G V
Sbjct: 2   AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPV 42

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>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +1

Query: 337 AGYTAEPPEEAK----VYVGNLPYDVDSERLAQLFDQAGVV 447
           AG T   P   +    V+VGN+PY+   E+L  +F + G V
Sbjct: 2   AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPV 42

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>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +1

Query: 337 AGYTAEPPEEAK----VYVGNLPYDVDSERLAQLFDQAGVV 447
           AG T   P   +    V+VGN+PY+   E+L  +F + G V
Sbjct: 2   AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPV 42

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>KSGA_METCA (Q60B77) Dimethyladenosine transferase (EC 2.1.1.-)|
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase)
          Length = 257

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 379 VGNLPYDVDSERLAQLFDQAGVVE 450
           VGNLPY++ +  L  LFDQ  V+E
Sbjct: 103 VGNLPYNISTPLLFHLFDQIDVIE 126

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>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP|
           A1) (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           K++VG +  D + + L + F+Q G +EV E+
Sbjct: 106 KIFVGGIKEDTEEDHLREYFEQYGKIEVIEI 136

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>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 373 VYVGNLPYDVDSERLAQLFDQAGVV 447
           V+VGN+PY+   E+L  +F + G V
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGSV 42

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>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC|
           3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP
           SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII)
          Length = 465

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 358 PEEAKVYVGNLPYDVDSERLAQLFDQAG-VVEV 453
           P+  ++++GNLP++VD   L   F   G VVE+
Sbjct: 335 PDSHQLFIGNLPHEVDKSELKDFFQNFGNVVEL 367

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>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 373 VYVGNLPYDVDSERLAQLFDQAGVV 447
           V+VGN+PY+   E+L  +F + G V
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGSV 42

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>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC|
           3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP
           SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII)
          Length = 466

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 358 PEEAKVYVGNLPYDVDSERLAQLFDQAG-VVEV 453
           P+  ++++GNLP++VD   L   F   G VVE+
Sbjct: 337 PDSHQLFIGNLPHEVDKSELKDFFQSYGNVVEL 369

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>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 373 VYVGNLPYDVDSERLAQLFDQAGVV 447
           V+VGN+PY+   E+L  +F + G V
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPV 42

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>RNP1_CAEEL (Q10667) RNA-binding protein rnp-1|
          Length = 305

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +1

Query: 367 AKVYVGNLPYDVDSERLAQLF 429
           +K++VGNLP +VDS +L Q+F
Sbjct: 3   SKLFVGNLPDNVDSNKLKQVF 23

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>DND1_HUMAN (Q8IYX4) Dead end protein homolog 1 (RNA-binding motif,|
           single-stranded interacting protein 4)
          Length = 353

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 355 PPEEAKVYVGNLPYDVDSERLAQLFDQAG 441
           PP  ++V++G LP DV   +L  LF + G
Sbjct: 54  PPAGSEVFIGRLPQDVYEHQLIPLFQRVG 82

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>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)|
          Length = 600

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           +++V NLP+D+  ++L + F Q G V  AE+
Sbjct: 524 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI 554

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>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein|
          Length = 124

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 346 TAEPPEEAKV-YVGNLPYDVDSERLAQLFDQAGVV 447
           T  PPE  +V YV NLP+++ SE +  +F + G +
Sbjct: 11  TRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAI 45

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>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)|
          Length = 591

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           +++V NLP+D+  ++L + F Q G V  AE+
Sbjct: 515 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI 545

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>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)|
          Length = 685

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVA 456
           E+  V+V N+PYD   E LA  F + G V+ A
Sbjct: 288 EDFSVFVRNVPYDATEESLAPHFSKFGSVKYA 319

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>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 473

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +1

Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAG 441
           + ++++VGNLP D+  E + +LF++ G
Sbjct: 74  QRSRLFVGNLPPDITEEEMRKLFEKYG 100

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>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2|
          Length = 218

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 367 AKVYVGNLPYDVDSERLAQLFDQAGVVE 450
           A +YVGNL +    E+L +LF + G +E
Sbjct: 46  ATIYVGNLSFYTSEEQLYELFSKCGSIE 73

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>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)|
          Length = 429

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 373 VYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           ++VGNL YD   E L + F Q G V  A++
Sbjct: 138 IFVGNLTYDSTPEDLTEFFSQIGKVVRADI 167

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>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 476

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +1

Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAG 441
           + ++++VGNLP D+  E + +LF++ G
Sbjct: 77  QRSRLFVGNLPPDITEEEMRKLFEKYG 103

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>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 471

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +1

Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAG 441
           + ++++VGNLP D+  E + +LF++ G
Sbjct: 72  QRSRLFVGNLPPDITEEEMRKLFEKYG 98

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>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO|
           protein) (54 kDa nuclear RNA- and DNA-binding protein)
           (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55)
           (DNA-binding p52/p100 complex, 52 kDa subunit)
          Length = 471

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +1

Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAG 441
           + ++++VGNLP D+  E + +LF++ G
Sbjct: 72  QRSRLFVGNLPPDITEEEMRKLFEKYG 98

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>KSGA_PSEPK (Q88QT6) Dimethyladenosine transferase (EC 2.1.1.-)|
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase)
          Length = 267

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 355 PPEEAKVYVGNLPYDVDSERLAQLFDQAGVV 447
           PP   KV VGNLPY++ +  +  L   AG++
Sbjct: 101 PPRSLKV-VGNLPYNISTPLIFHLLSHAGLI 130

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>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9|
          Length = 222

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 364 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           + ++YVGNLP DV  + L  LF + G +   E+
Sbjct: 14  DGRIYVGNLPSDVREKDLEDLFYKYGRIREIEL 46

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>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1)
          Length = 371

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           K++VG +  D +   L   F+Q G +EV E+
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI 135

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>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9|
          Length = 221

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 364 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           + ++YVGNLP DV  + L  LF + G +   E+
Sbjct: 13  DGRIYVGNLPTDVREKDLEDLFYKYGRIREIEL 45

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>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing|
           factor SRp30C)
          Length = 221

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 364 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           + ++YVGNLP DV  + L  LF + G +   E+
Sbjct: 13  DGRIYVGNLPTDVREKDLEDLFYKYGRIREIEL 45

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>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (HDP)
          Length = 319

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           K++VG +  D +   L   F+Q G +EV E+
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI 135

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>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed)
          Length = 319

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           K++VG +  D +   L   F+Q G +EV E+
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI 135

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>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 319

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           K++VG +  D +   L   F+Q G +EV E+
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI 135

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>CPB1_CAEEL (Q03571) Cytoplasmic polyadenylation element-binding protein 1|
          Length = 372

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 346 TAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVV 447
           +AEP    KV++G LP DV  E++   F   G V
Sbjct: 51  SAEPLYSRKVFIGGLPIDVSEEQVWATFGAFGKV 84

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>CASC3_HUMAN (O15234) Protein CASC3 (Cancer susceptibility candidate gene 3|
           protein) (Metastatic lymph node protein 51) (MLN 51
           protein) (Barentsz protein) (Btz)
          Length = 703

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
 Frame = +3

Query: 15  SPARLPPL-------IPFSHHGHLRHDTRHVCGNGGLALPPRVRRPTQARPGVRLPPTHF 173
           SPA LPP        +   H G   H T     N GL  PP    P Q  P   L PT+F
Sbjct: 563 SPAPLPPQGMLVQPGMNLPHPGLHPHQTPAPLPNPGLYPPPVSMSPGQPPPQQLLAPTYF 622

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>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (Unwinding protein 1)
           (UP1) (Fragment)
          Length = 195

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           K++VG +  D +   L   F+Q G +EV E+
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI 135

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>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 331 GDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           G AG   E PE A +++ +LP +   + L Q+F   G V  A+V
Sbjct: 389 GAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKV 432

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>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 331 GDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           G AG   E PE A +++ +LP +   + L Q+F   G V  A+V
Sbjct: 389 GAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKV 432

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>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Liver regeneration-related
           protein LRRG077)
          Length = 533

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 334 DAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVV 447
           D+ Y+ + P    +++VG +P D+  + L  LF++AG +
Sbjct: 60  DSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPI 98

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>KSGA_XYLFA (Q9PBJ6) Dimethyladenosine transferase (EC 2.1.1.-)|
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase)
          Length = 265

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 334 DAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVV 447
           D    A+P  +    VGNLPY++ S  L  +  QA ++
Sbjct: 95  DLSILAKPGNKKLRLVGNLPYNISSPILFHVLQQAAII 132

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>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1) (pp68)
          Length = 623

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 334 DAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVV 447
           D+ Y+ + P    +++VG +P D+  + L  LF++AG +
Sbjct: 150 DSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPI 188

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>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1)
          Length = 623

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 334 DAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVV 447
           D+ Y+ + P    +++VG +P D+  + L  LF++AG +
Sbjct: 150 DSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPI 188

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>PHP_DROME (P39769) Polyhomeotic-proximal chromatin protein|
          Length = 1589

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 449  STTPAWSKSWASRSLSTSYGRFPTYTLASSGGSAVYPASP 330
            ST P  + S  S ++++S G+    + ASSGG    PA+P
Sbjct: 1088 STAPPVTVSVTSTAVTSSPGQLVLLSTASSGGGGSIPATP 1127

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>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +1

Query: 337 AGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVV 447
           AG  +E  ++A VYVG L   V    L +LF QAG V
Sbjct: 3   AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPV 39

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>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 428

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           ++  V+VGNLPY VD   L + F   G +    +
Sbjct: 283 DKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRI 316

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>DMDB_DROME (Q9VDW3) Dystrophin, isoform B|
          Length = 1669

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 340  GYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEV 453
            G + +PP E      N+PY +D ER    +D   ++E+
Sbjct: 1020 GQSVKPPWERATTAANVPYYIDHERETTHWDHPEMIEL 1057

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>DMDA_DROME (Q9VDW6) Dystrophin, isoforms A/C/DLP1/DLP3|
          Length = 3497

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 340  GYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEV 453
            G + +PP E      N+PY +D ER    +D   ++E+
Sbjct: 2848 GQSVKPPWERATTAANVPYYIDHERETTHWDHPEMIEL 2885

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>CPB1_CAEJA (Q6E3C7) Cytoplasmic polyadenylation element-binding protein 1|
          Length = 617

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 346 TAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEV 453
           +AEP    KV++G LP DV  E +   F   G V V
Sbjct: 266 SAEPLYSRKVFIGGLPIDVTEEEVWATFGWFGKVLV 301

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>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           +E K++VG L +D + + L Q+F + G  +++EV
Sbjct: 4   DEGKLFVGGLSFDTNEQALEQVFSKYG--QISEV 35

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>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP)
          Length = 172

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           +E K++VG L +D + + L Q+F + G  +++EV
Sbjct: 4   DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEV 35

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>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           +E K++VG L +D + + L Q+F + G  +++EV
Sbjct: 4   DEGKLFVGGLSFDTNEQALEQVFSKYG--QISEV 35

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>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           +E K++VG L +D + + L Q+F + G  +++EV
Sbjct: 4   DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEV 35

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>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           +E K++VG L +D + + L Q+F + G  +++EV
Sbjct: 4   DEGKLFVGGLSFDTNEQALEQVFSKYG--QISEV 35

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>PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein|
          Length = 121

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 355 PPEEAKV-YVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           PPE  ++ YV NLPY + S+ +  +F + G +    V
Sbjct: 10  PPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRV 46

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>CPB1_CAEBR (Q6E3D0) Cytoplasmic polyadenylation element-binding protein 1|
          Length = 585

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 343 YTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVV 447
           ++ EP    KV++G LP DV  E +   F   G V
Sbjct: 243 FSTEPLYSRKVFIGGLPIDVPDEEVYVTFGSFGKV 277

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>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3)
          Length = 660

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 358 PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEV 462
           P    VYV NLP ++  + L + F + GV+  A V
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVV 260


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,288,063
Number of Sequences: 219361
Number of extensions: 536982
Number of successful extensions: 2688
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 2504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2684
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result