ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet66c10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK120360.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067M02, full insert sequence Length = 2047 Score = 369 bits (186), Expect = 4e-99 Identities = 288/322 (89%) Strand = Plus / Plus Query: 32 cggcggcggcgatggcgcaccggctgctgcgggacgcgcaggcggacggctgggagaggt 91 ||||||||| |||||| |||||||||||||| ||||||||||||||||| |||||| ||| Sbjct: 56 cggcggcggagatggctcaccggctgctgcgagacgcgcaggcggacgggtgggagcggt 115 Query: 92 ccgacttccccatcatctgcgagtcatgcctcggcgacaacccctacgtccgcatgctga 151 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct: 116 ccgacttccccatcatctgcgagtcctgcctcggcgacaacccctacgtccgcatgttga 175 Query: 152 gagcagaatatgacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttgga 211 ||||||||||||| || || ||||| || ||||| || || |||||||||||||||||| Sbjct: 176 gagcagaatatgataaagagtgcaaaatatgtgcacgtccgtttactgtcttccgttggc 235 Query: 212 gacctggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttga 271 ||||||| ||||||||||| |||||||||||||||||||||||||| || ||||| ||| Sbjct: 236 gacctggccgggatgcaagatacaagaagacagagatctgccagacatgttgcaaactga 295 Query: 272 aaaacgtctgccaggtctgccttctggaccttgaatatggtctgccagttcaggttcgcg 331 |||| ||||||||||||||||| ||||| |||||||||||||| || || |||||| | | Sbjct: 296 aaaatgtctgccaggtctgcctgctggatcttgaatatggtctaccggtccaggttaggg 355 Query: 332 atactgcgctcgccatcaattc 353 |||| || ||||| || ||||| Sbjct: 356 atacagcactcgctattaattc 377
>dbj|AK111689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003O14, full insert sequence Length = 1661 Score = 355 bits (179), Expect = 6e-95 Identities = 263/291 (90%) Strand = Plus / Plus Query: 36 ggcggcgatggcgcaccggctgctgcgggacgcgcaggcggacggctgggagaggtccga 95 ||||| |||||| |||||||||||||||||||||||||||||||| |||||| | ||||| Sbjct: 67 ggcggagatggcccaccggctgctgcgggacgcgcaggcggacgggtgggagcgttccga 126 Query: 96 cttccccatcatctgcgagtcatgcctcggcgacaacccctacgtccgcatgctgagagc 155 ||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||| Sbjct: 127 cttccccatcatctgcgagtcctgcctcggcgacaacccctacgttcgcatgttaagagc 186 Query: 156 agaatatgacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttggagacc 215 |||||| || || || ||||| || ||||| || ||||||||||||||||||||| |||| Sbjct: 187 agaatacgataaagagtgcaaaatatgtgcacgtccttttactgtcttccgttggcgacc 246 Query: 216 tggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttgaaaaa 275 ||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||| Sbjct: 247 tggccgggatgcaaggtacaagaagacagagatctgccagacttgttgcaaactgaaaaa 306 Query: 276 cgtctgccaggtctgccttctggaccttgaatatggtctgccagttcaggt 326 |||||||||||||||||||| || ||||||||||||||||| || ||||| Sbjct: 307 tgtctgccaggtctgccttctagatcttgaatatggtctgccggtccaggt 357
>ref|XM_477474.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1461 Score = 349 bits (176), Expect = 4e-93 Identities = 257/284 (90%) Strand = Plus / Plus Query: 43 atggcgcaccggctgctgcgggacgcgcaggcggacggctgggagaggtccgacttcccc 102 ||||| |||||||||||||||||||||||||||||||| |||||| | |||||||||||| Sbjct: 1 atggcccaccggctgctgcgggacgcgcaggcggacgggtgggagcgttccgacttcccc 60 Query: 103 atcatctgcgagtcatgcctcggcgacaacccctacgtccgcatgctgagagcagaatat 162 |||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||||| Sbjct: 61 atcatctgcgagtcctgcctcggcgacaacccctacgttcgcatgttaagagcagaatac 120 Query: 163 gacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttggagacctggtcgg 222 || || || ||||| || ||||| || ||||||||||||||||||||| ||||||| ||| Sbjct: 121 gataaagagtgcaaaatatgtgcacgtccttttactgtcttccgttggcgacctggccgg 180 Query: 223 gatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttgaaaaacgtctgc 282 ||||||||||||||||||||||||||||||||||| || ||||| ||||||| |||||| Sbjct: 181 gatgcaaggtacaagaagacagagatctgccagacttgttgcaaactgaaaaatgtctgc 240 Query: 283 caggtctgccttctggaccttgaatatggtctgccagttcaggt 326 |||||||||||||| || ||||||||||||||||| || ||||| Sbjct: 241 caggtctgccttctagatcttgaatatggtctgccggtccaggt 284
>gb|AY104700.1| Zea mays PCO101905 mRNA sequence Length = 1777 Score = 349 bits (176), Expect = 4e-93 Identities = 278/312 (89%) Strand = Plus / Plus Query: 42 gatggcgcaccggctgctgcgggacgcgcaggcggacggctgggagaggtccgacttccc 101 ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| Sbjct: 126 gatggcgcaccggctgctgcgggacgcgcaggcggacgggtgggagcggtcggacttccc 185 Query: 102 catcatctgcgagtcatgcctcggcgacaacccctacgtccgcatgctgagagcagaata 161 |||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||| Sbjct: 186 catcatctgcgagtcatgcctcggcgacaacccctacgtccggatgttaagagctgaata 245 Query: 162 tgacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttggagacctggtcg 221 |||||| |||||||| || ||||| || ||||||||||| ||||| ||| | ||||| || Sbjct: 246 tgacaaagaatgcaaaatttgtgcacgtccttttactgtattccggtggcgtcctgggcg 305 Query: 222 ggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttgaaaaacgtctg 281 |||||||||||||||||||| |||||||||||||| || |||||| | || || ||||| Sbjct: 306 agatgcaaggtacaagaagactgagatctgccagacatgttgcaagctaaagaatgtctg 365 Query: 282 ccaggtctgccttctggaccttgaatatggtctgccagttcaggttcgcgatactgcgct 341 |||||||||||| ||||| ||||||||||||||||| |||||||| || ||||| || || Sbjct: 366 ccaggtctgcctgctggatcttgaatatggtctgcctgttcaggtccgagatacagcact 425 Query: 342 cgccatcaattc 353 | | |||||||| Sbjct: 426 ctctatcaattc 437
>ref|XM_493940.1| Oryza sativa (japonica cultivar-group), Ozsa8005 predicted mRNA Length = 1449 Score = 347 bits (175), Expect = 2e-92 Identities = 277/311 (89%) Strand = Plus / Plus Query: 43 atggcgcaccggctgctgcgggacgcgcaggcggacggctgggagaggtccgacttcccc 102 ||||| |||||||||||||| ||||||||||||||||| |||||| |||||||||||||| Sbjct: 1 atggctcaccggctgctgcgagacgcgcaggcggacgggtgggagcggtccgacttcccc 60 Query: 103 atcatctgcgagtcatgcctcggcgacaacccctacgtccgcatgctgagagcagaatat 162 |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 61 atcatctgcgagtcctgcctcggcgacaacccctacgtccgcatgttgagagcagaatat 120 Query: 163 gacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttggagacctggtcgg 222 || || || ||||| || ||||| || || |||||||||||||||||| ||||||| ||| Sbjct: 121 gataaagagtgcaaaatatgtgcacgtccgtttactgtcttccgttggcgacctggccgg 180 Query: 223 gatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttgaaaaacgtctgc 282 |||||||| |||||||||||||||||||||||||| || ||||| ||||||| |||||| Sbjct: 181 gatgcaagatacaagaagacagagatctgccagacatgttgcaaactgaaaaatgtctgc 240 Query: 283 caggtctgccttctggaccttgaatatggtctgccagttcaggttcgcgatactgcgctc 342 ||||||||||| || || |||||||||||||| || || |||||| | ||||| || ||| Sbjct: 241 caggtctgcctgctagatcttgaatatggtctaccggtccaggttagggatacagcactc 300 Query: 343 gccatcaattc 353 || || ||||| Sbjct: 301 gctattaattc 311
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 198 bits (100), Expect = 9e-48 Identities = 157/176 (89%) Strand = Plus / Minus Query: 151 agagcagaatatgacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttgg 210 ||||||||||| || || || ||||| || ||||| || ||||||||||||||||||||| Sbjct: 10714519 agagcagaatacgataaagagtgcaaaatatgtgcacgtccttttactgtcttccgttgg 10714460 Query: 211 agacctggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttg 270 ||||||| |||||||||||||||||||||||||||||||||||||| || ||||| || Sbjct: 10714459 cgacctggccgggatgcaaggtacaagaagacagagatctgccagacttgttgcaaactg 10714400 Query: 271 aaaaacgtctgccaggtctgccttctggaccttgaatatggtctgccagttcaggt 326 ||||| |||||||||||||||||||| || ||||||||||||||||| || ||||| Sbjct: 10714399 aaaaatgtctgccaggtctgccttctagatcttgaatatggtctgccggtccaggt 10714344 Score = 167 bits (84), Expect = 3e-38 Identities = 105/112 (93%) Strand = Plus / Minus Query: 36 ggcggcgatggcgcaccggctgctgcgggacgcgcaggcggacggctgggagaggtccga 95 ||||| |||||| |||||||||||||||||||||||||||||||| |||||| | ||||| Sbjct: 10715182 ggcggagatggcccaccggctgctgcgggacgcgcaggcggacgggtgggagcgttccga 10715123 Query: 96 cttccccatcatctgcgagtcatgcctcggcgacaacccctacgtccgcatg 147 ||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 10715122 cttccccatcatctgcgagtcctgcctcggcgacaacccctacgttcgcatg 10715071
>dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0557D09 Length = 135315 Score = 198 bits (100), Expect = 9e-48 Identities = 157/176 (89%) Strand = Plus / Minus Query: 151 agagcagaatatgacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttgg 210 ||||||||||| || || || ||||| || ||||| || ||||||||||||||||||||| Sbjct: 43965 agagcagaatacgataaagagtgcaaaatatgtgcacgtccttttactgtcttccgttgg 43906 Query: 211 agacctggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttg 270 ||||||| |||||||||||||||||||||||||||||||||||||| || ||||| || Sbjct: 43905 cgacctggccgggatgcaaggtacaagaagacagagatctgccagacttgttgcaaactg 43846 Query: 271 aaaaacgtctgccaggtctgccttctggaccttgaatatggtctgccagttcaggt 326 ||||| |||||||||||||||||||| || ||||||||||||||||| || ||||| Sbjct: 43845 aaaaatgtctgccaggtctgccttctagatcttgaatatggtctgccggtccaggt 43790 Score = 167 bits (84), Expect = 3e-38 Identities = 105/112 (93%) Strand = Plus / Minus Query: 36 ggcggcgatggcgcaccggctgctgcgggacgcgcaggcggacggctgggagaggtccga 95 ||||| |||||| |||||||||||||||||||||||||||||||| |||||| | ||||| Sbjct: 44628 ggcggagatggcccaccggctgctgcgggacgcgcaggcggacgggtgggagcgttccga 44569 Query: 96 cttccccatcatctgcgagtcatgcctcggcgacaacccctacgtccgcatg 147 ||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 44568 cttccccatcatctgcgagtcctgcctcggcgacaacccctacgttcgcatg 44517
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 184 bits (93), Expect = 1e-43 Identities = 177/205 (86%) Strand = Plus / Minus Query: 149 tgagagcagaatatgacaaggaatgcaagatctgtgctcgcccttttactgtcttccgtt 208 |||||||||||||||| || || ||||| || ||||| || || |||||||||||||||| Sbjct: 3538502 tgagagcagaatatgataaagagtgcaaaatatgtgcacgtccgtttactgtcttccgtt 3538443 Query: 209 ggagacctggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagt 268 || ||||||| ||||||||||| |||||||||||||||||||||||||| || ||||| Sbjct: 3538442 ggcgacctggccgggatgcaagatacaagaagacagagatctgccagacatgttgcaaac 3538383 Query: 269 tgaaaaacgtctgccaggtctgccttctggaccttgaatatggtctgccagttcaggttc 328 ||||||| ||||||||||||||||| || || |||||||||||||| || || |||||| Sbjct: 3538382 tgaaaaatgtctgccaggtctgcctgctagatcttgaatatggtctaccggtccaggtta 3538323 Query: 329 gcgatactgcgctcgccatcaattc 353 | ||||| || ||||| || ||||| Sbjct: 3538322 gggatacagcactcgctattaattc 3538298 Score = 182 bits (92), Expect = 5e-43 Identities = 110/116 (94%) Strand = Plus / Minus Query: 32 cggcggcggcgatggcgcaccggctgctgcgggacgcgcaggcggacggctgggagaggt 91 ||||||||| |||||| |||||||||||||| ||||||||||||||||| |||||| ||| Sbjct: 3539157 cggcggcggagatggctcaccggctgctgcgagacgcgcaggcggacgggtgggagcggt 3539098 Query: 92 ccgacttccccatcatctgcgagtcatgcctcggcgacaacccctacgtccgcatg 147 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 3539097 ccgacttccccatcatctgcgagtcctgcctcggcgacaacccctacgtccgcatg 3539042
>dbj|AP002071.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0675A05 Length = 131972 Score = 184 bits (93), Expect = 1e-43 Identities = 177/205 (86%) Strand = Plus / Minus Query: 149 tgagagcagaatatgacaaggaatgcaagatctgtgctcgcccttttactgtcttccgtt 208 |||||||||||||||| || || ||||| || ||||| || || |||||||||||||||| Sbjct: 30339 tgagagcagaatatgataaagagtgcaaaatatgtgcacgtccgtttactgtcttccgtt 30280 Query: 209 ggagacctggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagt 268 || ||||||| ||||||||||| |||||||||||||||||||||||||| || ||||| Sbjct: 30279 ggcgacctggccgggatgcaagatacaagaagacagagatctgccagacatgttgcaaac 30220 Query: 269 tgaaaaacgtctgccaggtctgccttctggaccttgaatatggtctgccagttcaggttc 328 ||||||| ||||||||||||||||| || || |||||||||||||| || || |||||| Sbjct: 30219 tgaaaaatgtctgccaggtctgcctgctagatcttgaatatggtctaccggtccaggtta 30160 Query: 329 gcgatactgcgctcgccatcaattc 353 | ||||| || ||||| || ||||| Sbjct: 30159 gggatacagcactcgctattaattc 30135 Score = 182 bits (92), Expect = 5e-43 Identities = 110/116 (94%) Strand = Plus / Minus Query: 32 cggcggcggcgatggcgcaccggctgctgcgggacgcgcaggcggacggctgggagaggt 91 ||||||||| |||||| |||||||||||||| ||||||||||||||||| |||||| ||| Sbjct: 30994 cggcggcggagatggctcaccggctgctgcgagacgcgcaggcggacgggtgggagcggt 30935 Query: 92 ccgacttccccatcatctgcgagtcatgcctcggcgacaacccctacgtccgcatg 147 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 30934 ccgacttccccatcatctgcgagtcctgcctcggcgacaacccctacgtccgcatg 30879
>ref|NM_100610.2| Arabidopsis thaliana RNA binding / nucleic acid binding AT1G07360 mRNA, complete cds Length = 1671 Score = 113 bits (57), Expect = 4e-22 Identities = 189/233 (81%) Strand = Plus / Plus Query: 91 tccgacttccccatcatctgcgagtcatgcctcggcgacaacccctacgtccgcatgctg 150 ||||| ||||| ||||||||||| || || ||||| |||||||||||||| || ||| Sbjct: 101 tccgatttcccaatcatctgcgaatcttgtctcggtgacaacccctacgtgcgaatgacc 160 Query: 151 agagcagaatatgacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttgg 210 | ||| | ||||| |||||||||||||| ||| | || ||||| || || || | ||| Sbjct: 161 aaagcgaattatgataaggaatgcaagatatgtacacgacctttcacggtgtttaggtgg 220 Query: 211 agacctggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttg 270 ||||||| |||||||| || |||||||| || || || || ||||| |||||||||||| Sbjct: 221 cgacctggccgggatgctagatacaagaaaaccgaaatttgtcagacttgctgcaagttg 280 Query: 271 aaaaacgtctgccaggtctgccttctggaccttgaatatggtctgccagttca 323 ||||| || || || ||||| |||||||| ||||| |||||||| |||||||| Sbjct: 281 aaaaatgtttgtcaagtctgtcttctggatcttgagtatggtcttccagttca 333
>gb|AY114632.1| Arabidopsis thaliana unknown protein (At1g07360) mRNA, complete cds Length = 1489 Score = 113 bits (57), Expect = 4e-22 Identities = 189/233 (81%) Strand = Plus / Plus Query: 91 tccgacttccccatcatctgcgagtcatgcctcggcgacaacccctacgtccgcatgctg 150 ||||| ||||| ||||||||||| || || ||||| |||||||||||||| || ||| Sbjct: 49 tccgatttcccaatcatctgcgaatcttgtctcggtgacaacccctacgtgcgaatgacc 108 Query: 151 agagcagaatatgacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttgg 210 | ||| | ||||| |||||||||||||| ||| | || ||||| || || || | ||| Sbjct: 109 aaagcgaattatgataaggaatgcaagatatgtacacgacctttcacggtgtttaggtgg 168 Query: 211 agacctggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttg 270 ||||||| |||||||| || |||||||| || || || || ||||| |||||||||||| Sbjct: 169 cgacctggccgggatgctagatacaagaaaaccgaaatttgtcagacttgctgcaagttg 228 Query: 271 aaaaacgtctgccaggtctgccttctggaccttgaatatggtctgccagttca 323 ||||| || || || ||||| |||||||| ||||| |||||||| |||||||| Sbjct: 229 aaaaatgtttgtcaagtctgtcttctggatcttgagtatggtcttccagttca 281
>gb|AY054519.1| Arabidopsis thaliana Unknown protein (At1g07360; F22G5.30) mRNA, complete cds Length = 1670 Score = 113 bits (57), Expect = 4e-22 Identities = 189/233 (81%) Strand = Plus / Plus Query: 91 tccgacttccccatcatctgcgagtcatgcctcggcgacaacccctacgtccgcatgctg 150 ||||| ||||| ||||||||||| || || ||||| |||||||||||||| || ||| Sbjct: 101 tccgatttcccaatcatctgcgaatcttgtctcggtgacaacccctacgtgcgaatgacc 160 Query: 151 agagcagaatatgacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttgg 210 | ||| | ||||| |||||||||||||| ||| | || ||||| || || || | ||| Sbjct: 161 aaagcgaattatgataaggaatgcaagatatgtacacgacctttcacggtgtttaggtgg 220 Query: 211 agacctggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttg 270 ||||||| |||||||| || |||||||| || || || || ||||| |||||||||||| Sbjct: 221 cgacctggccgggatgctagatacaagaaaaccgaaatttgtcagacttgctgcaagttg 280 Query: 271 aaaaacgtctgccaggtctgccttctggaccttgaatatggtctgccagttca 323 ||||| || || || ||||| |||||||| ||||| |||||||| |||||||| Sbjct: 281 aaaaatgtttgtcaagtctgtcttctggatcttgagtatggtcttccagttca 333
>emb|BX813529.1|CNS0ADSU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB22ZD04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1616 Score = 113 bits (57), Expect = 4e-22 Identities = 189/233 (81%) Strand = Plus / Plus Query: 91 tccgacttccccatcatctgcgagtcatgcctcggcgacaacccctacgtccgcatgctg 150 ||||| ||||| ||||||||||| || || ||||| |||||||||||||| || ||| Sbjct: 83 tccgatttcccaatcatctgcgaatcttgtctcggtgacaacccctacgtgcgaatgacc 142 Query: 151 agagcagaatatgacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttgg 210 | ||| | ||||| |||||||||||||| ||| | || ||||| || || || | ||| Sbjct: 143 aaagcgaattatgataaggaatgcaagatatgtacacgacctttcacggtgtttaggtgg 202 Query: 211 agacctggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttg 270 ||||||| |||||||| || |||||||| || || || || ||||| |||||||||||| Sbjct: 203 cgacctggccgggatgctagatacaagaaaaccgaaatttgtcagacttgctgcaagttg 262 Query: 271 aaaaacgtctgccaggtctgccttctggaccttgaatatggtctgccagttca 323 ||||| || || || ||||| |||||||| ||||| |||||||| |||||||| Sbjct: 263 aaaaatgtttgtcaagtctgtcttctggatcttgagtatggtcttccagttca 315
>emb|BX817119.1|CNS0AD2R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH86ZC09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1581 Score = 113 bits (57), Expect = 4e-22 Identities = 189/233 (81%) Strand = Plus / Plus Query: 91 tccgacttccccatcatctgcgagtcatgcctcggcgacaacccctacgtccgcatgctg 150 ||||| ||||| ||||||||||| || || ||||| |||||||||||||| || ||| Sbjct: 56 tccgatttcccaatcatctgcgaatcttgtctcggtgacaacccctacgtgcgaatgacc 115 Query: 151 agagcagaatatgacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttgg 210 | ||| | ||||| |||||||||||||| ||| | || ||||| || || || | ||| Sbjct: 116 aaagcgaattatgataaggaatgcaagatatgtacacgacctttcacggtgtttaggtgg 175 Query: 211 agacctggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttg 270 ||||||| |||||||| || |||||||| || || || || ||||| |||||||||||| Sbjct: 176 cgacctggccgggatgctagatacaagaaaaccgaaatttgtcagacttgctgcaagttg 235 Query: 271 aaaaacgtctgccaggtctgccttctggaccttgaatatggtctgccagttca 323 ||||| || || || ||||| |||||||| ||||| |||||||| |||||||| Sbjct: 236 aaaaatgtttgtcaagtctgtcttctggatcttgagtatggtcttccagttca 288
>gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence Length = 104830 Score = 95.6 bits (48), Expect = 9e-17 Identities = 135/164 (82%) Strand = Plus / Plus Query: 160 tatgacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttggagacctggt 219 ||||| |||||||||||||| ||| | || ||||| || || || | ||| ||||||| Sbjct: 81718 tatgataaggaatgcaagatatgtacacgacctttcacggtgtttaggtggcgacctggc 81777 Query: 220 cgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttgaaaaacgtc 279 |||||||| || |||||||| || || || || ||||| ||||||||||||||||| || Sbjct: 81778 cgggatgctagatacaagaaaaccgaaatttgtcagacttgctgcaagttgaaaaatgtt 81837 Query: 280 tgccaggtctgccttctggaccttgaatatggtctgccagttca 323 || || ||||| |||||||| ||||| |||||||| |||||||| Sbjct: 81838 tgtcaagtctgtcttctggatcttgagtatggtcttccagttca 81881 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 91 tccgacttccccatcatctgcgagtcatgcctcggcgacaacccctacgt 140 ||||| ||||| ||||||||||| || || ||||| |||||||||||||| Sbjct: 81313 tccgatttcccaatcatctgcgaatcttgtctcggtgacaacccctacgt 81362
>emb|BX814764.1|CNS0ADP0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB93ZC03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1616 Score = 91.7 bits (46), Expect = 1e-15 Identities = 188/234 (80%), Gaps = 1/234 (0%) Strand = Plus / Plus Query: 91 tccgacttccccatcatctgcg-agtcatgcctcggcgacaacccctacgtccgcatgct 149 ||||| ||||| |||||||||| | || || ||||| |||||||||||||| || ||| Sbjct: 91 tccgatttcccaatcatctgcgcaatcttgtctcggtgacaacccctacgtgcgaatgac 150 Query: 150 gagagcagaatatgacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttg 209 | ||| | ||||| |||||||||||||| ||| | || ||||| || || || | || Sbjct: 151 caaagcgaattatgataaggaatgcaagatatgtacacgacctttcacggtgtttaggtg 210 Query: 210 gagacctggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagtt 269 | ||||||| |||||||| || |||||||| || || || || ||||| ||||||||||| Sbjct: 211 gcgacctggccgggatgctagatacaagaaaaccgaaatttgtcagacttgctgcaagtt 270 Query: 270 gaaaaacgtctgccaggtctgccttctggaccttgaatatggtctgccagttca 323 |||||| || || | ||||| |||||||| ||||| |||||||| |||||||| Sbjct: 271 gaaaaatgtttgtgaagtctgtcttctggatcttgagtatggtcttccagttca 324
>gb|DQ294268.1| Solanum tuberosum clone 138G04 RRM-containing RNA-binding protein-like protein mRNA, complete cds Length = 1747 Score = 91.7 bits (46), Expect = 1e-15 Identities = 142/174 (81%) Strand = Plus / Plus Query: 153 agcagaatatgacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttggag 212 |||||| ||||||||||| |||||||| || | || || || || || ||| | ||||| Sbjct: 215 agcagattatgacaaggagtgcaagatatgcacacgacccttcacagtgttcagatggag 274 Query: 213 acctggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttgaa 272 |||||||||||||||||| ||||| || | |||||||| ||||| ||| |||||||||| Sbjct: 275 acctggtcgggatgcaagatacaaaaaatctgagatctgtcagacctgcagcaagttgaa 334 Query: 273 aaacgtctgccaggtctgccttctggaccttgaatatggtctgccagttcaggt 326 || || || || || || ||| |||| ||||| |||||| ||||||||||||| Sbjct: 335 gaatgtttgtcaagtttgtcttttggatcttgagtatggtttgccagttcaggt 388
>gb|DQ268862.1| Solanum tuberosum clone 183E08 RRM-containing RNA-binding protein-like protein mRNA, complete cds Length = 1679 Score = 87.7 bits (44), Expect = 2e-14 Identities = 140/172 (81%) Strand = Plus / Plus Query: 153 agcagaatatgacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttggag 212 |||||| ||||||||||| |||||||| || | || || || || || ||| | ||||| Sbjct: 194 agcagattatgacaaggagtgcaagatatgcacacgacccttcacagtgttcagatggag 253 Query: 213 acctggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttgaa 272 |||||||||||||||||| ||||| || | |||||||| ||||| ||| |||||||||| Sbjct: 254 acctggtcgggatgcaagatacaaaaaatctgagatctgtcagacctgcagcaagttgaa 313 Query: 273 aaacgtctgccaggtctgccttctggaccttgaatatggtctgccagttcag 324 || || || || || || ||| |||| ||||| |||||| ||||||||||| Sbjct: 314 gaatgtttgtcaagtttgtcttttggatcttgagtatggtttgccagttcag 365
>gb|BT014496.1| Lycopersicon esculentum clone 133866F, mRNA sequence Length = 1903 Score = 75.8 bits (38), Expect = 9e-11 Identities = 140/174 (80%) Strand = Plus / Plus Query: 153 agcagaatatgacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttggag 212 |||||| ||||||||||| ||||||||||| | || || || || || ||| | ||||| Sbjct: 302 agcagattatgacaaggagtgcaagatctgcacgcgacccttcacagtgttcaggtggag 361 Query: 213 acctggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttgaa 272 |||||||||||||| || ||||| ||| | |||||||| ||||| ||| |||| ||||| Sbjct: 362 gcctggtcgggatgcgagatacaaaaagtctgagatctgtcagacctgcagcaaattgaa 421 Query: 273 aaacgtctgccaggtctgccttctggaccttgaatatggtctgccagttcaggt 326 || || || || || ||||| | || |||||||||||| |||| |||||||| Sbjct: 422 gaatgtttgtcaagtttgcctgttagatcttgaatatggtttgcctgttcaggt 475
>gb|AC146743.11| Medicago truncatula clone mth2-12k22, complete sequence Length = 116419 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 208 tggagacctggtcgggatgcaaggtacaagaagacagagatctgccagac 257 ||||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct: 99135 tggagacctggtcgggatgcaagatataagaaatcagagatctgccagac 99184 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 91 tccgacttccccatcatctgcgagtcatg 119 |||||||| |||||||||||||| ||||| Sbjct: 98402 tccgactttcccatcatctgcgaatcatg 98430
>dbj|AK111997.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D10, full insert sequence Length = 1637 Score = 65.9 bits (33), Expect = 8e-08 Identities = 72/85 (84%) Strand = Plus / Plus Query: 269 tgaaaaacgtctgccaggtctgccttctggaccttgaatatggtctgccagttcaggttc 328 ||||||| ||||||||||||||||| || || |||||||||||||| || || |||||| Sbjct: 1 tgaaaaatgtctgccaggtctgcctgctagatcttgaatatggtctaccggtccaggtta 60 Query: 329 gcgatactgcgctcgccatcaattc 353 | ||||| || ||||| || ||||| Sbjct: 61 gggatacagcactcgctattaattc 85
>emb|CR761977.1| Xenopus tropicalis finished cDNA, clone TEgg040d02 Length = 1531 Score = 65.9 bits (33), Expect = 8e-08 Identities = 75/89 (84%) Strand = Plus / Plus Query: 235 aagaagacagagatctgccagacgtgctgcaagttgaaaaacgtctgccaggtctgcctt 294 ||||||||||| | ||||| |||||| ||||||||||||| ||||| ||| ||| || Sbjct: 207 aagaagacagaagtgtgccaaacgtgcagcaagttgaaaaatgtctgtcagacctgtctg 266 Query: 295 ctggaccttgaatatggtctgccagttca 323 || |||||||||||||| |||||| |||| Sbjct: 267 cttgaccttgaatatggactgccaattca 295
>ref|NM_128511.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT2G29580 mRNA, complete cds Length = 1718 Score = 63.9 bits (32), Expect = 3e-07 Identities = 122/152 (80%) Strand = Plus / Plus Query: 175 aagatctgtgctcgcccttttactgtcttccgttggagacctggtcgggatgcaaggtac 234 ||||||||| | || ||||| || || ||| | ||| |||||||| ||||||| || ||| Sbjct: 221 aagatctgtacccggcctttcacggttttcagatggcgacctggtagggatgcgagatac 280 Query: 235 aagaagacagagatctgccagacgtgctgcaagttgaaaaacgtctgccaggtctgcctt 294 |||||||| || | || ||||| || ||||||||||| || || ||||| || || || Sbjct: 281 aagaagactgaagtttgtcagacatgttgcaagttgaagaatgtgtgccaagtttgtctc 340 Query: 295 ctggaccttgaatatggtctgccagttcaggt 326 |||| ||||| |||||||| ||||||||||| Sbjct: 341 ttggatcttgagtatggtcttccagttcaggt 372
>emb|AL662949.4|OSJN00144 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0115I21, complete sequence Length = 127162 Score = 63.9 bits (32), Expect = 3e-07 Identities = 79/94 (84%), Gaps = 3/94 (3%) Strand = Plus / Plus Query: 213 acctggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttgaa 272 ||||||||||||||| ||||||||||||||| || |||||||| || ||| | |||| Sbjct: 118082 acctggtcgggatgc---gtacaagaagacagaaatatgccagacatgttgccaactgaa 118138 Query: 273 aaacgtctgccaggtctgccttctggaccttgaa 306 ||| ||||||| ||||||||| || || |||||| Sbjct: 118139 aaaagtctgcctggtctgcctgctagatcttgaa 118172 Score = 60.0 bits (30), Expect = 5e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 63 ggacgcgcaggcggacggctgggagaggtccgacttccccatcatctgcgagtc 116 ||||| |||||||||||| |||||| |||| || ||||||||||||| |||||| Sbjct: 104011 ggacgtgcaggcggacgggtgggagcggtcggatttccccatcatctacgagtc 104064
>emb|AL662959.3|OSJN00160 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019G23, complete sequence Length = 150305 Score = 63.9 bits (32), Expect = 3e-07 Identities = 79/94 (84%), Gaps = 3/94 (3%) Strand = Plus / Minus Query: 213 acctggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttgaa 272 ||||||||||||||| ||||||||||||||| || |||||||| || ||| | |||| Sbjct: 127128 acctggtcgggatgc---gtacaagaagacagaaatatgccagacatgttgccaactgaa 127072 Query: 273 aaacgtctgccaggtctgccttctggaccttgaa 306 ||| ||||||| ||||||||| || || |||||| Sbjct: 127071 aaaagtctgcctggtctgcctgctagatcttgaa 127038 Score = 60.0 bits (30), Expect = 5e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 63 ggacgcgcaggcggacggctgggagaggtccgacttccccatcatctgcgagtc 116 ||||| |||||||||||| |||||| |||| || ||||||||||||| |||||| Sbjct: 141199 ggacgtgcaggcggacgggtgggagcggtcggatttccccatcatctacgagtc 141146
>gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete sequence Length = 131743 Score = 63.9 bits (32), Expect = 3e-07 Identities = 122/152 (80%) Strand = Plus / Minus Query: 175 aagatctgtgctcgcccttttactgtcttccgttggagacctggtcgggatgcaaggtac 234 ||||||||| | || ||||| || || ||| | ||| |||||||| ||||||| || ||| Sbjct: 7200 aagatctgtacccggcctttcacggttttcagatggcgacctggtagggatgcgagatac 7141 Query: 235 aagaagacagagatctgccagacgtgctgcaagttgaaaaacgtctgccaggtctgcctt 294 |||||||| || | || ||||| || ||||||||||| || || ||||| || || || Sbjct: 7140 aagaagactgaagtttgtcagacatgttgcaagttgaagaatgtgtgccaagtttgtctc 7081 Query: 295 ctggaccttgaatatggtctgccagttcaggt 326 |||| ||||| |||||||| ||||||||||| Sbjct: 7080 ttggatcttgagtatggtcttccagttcaggt 7049
>gb|AF428354.1|AF428354 Arabidopsis thaliana At2g29580/F16P2.4 mRNA, complete cds Length = 1718 Score = 63.9 bits (32), Expect = 3e-07 Identities = 122/152 (80%) Strand = Plus / Plus Query: 175 aagatctgtgctcgcccttttactgtcttccgttggagacctggtcgggatgcaaggtac 234 ||||||||| | || ||||| || || ||| | ||| |||||||| ||||||| || ||| Sbjct: 221 aagatctgtacccggcctttcacggttttcagatggcgacctggtagggatgcgagatac 280 Query: 235 aagaagacagagatctgccagacgtgctgcaagttgaaaaacgtctgccaggtctgcctt 294 |||||||| || | || ||||| || ||||||||||| || || ||||| || || || Sbjct: 281 aagaagactgaagtttgtcagacatgttgcaagttgaagaatgtgtgccaagtttgtctc 340 Query: 295 ctggaccttgaatatggtctgccagttcaggt 326 |||| ||||| |||||||| ||||||||||| Sbjct: 341 ttggatcttgagtatggtcttccagttcaggt 372
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 63.9 bits (32), Expect = 3e-07 Identities = 79/94 (84%), Gaps = 3/94 (3%) Strand = Plus / Minus Query: 213 acctggtcgggatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttgaa 272 ||||||||||||||| ||||||||||||||| || |||||||| || ||| | |||| Sbjct: 4499396 acctggtcgggatgc---gtacaagaagacagaaatatgccagacatgttgccaactgaa 4499340 Query: 273 aaacgtctgccaggtctgccttctggaccttgaa 306 ||| ||||||| ||||||||| || || |||||| Sbjct: 4499339 aaaagtctgcctggtctgcctgctagatcttgaa 4499306 Score = 60.0 bits (30), Expect = 5e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 63 ggacgcgcaggcggacggctgggagaggtccgacttccccatcatctgcgagtc 116 ||||| |||||||||||| |||||| |||| || ||||||||||||| |||||| Sbjct: 4513467 ggacgtgcaggcggacgggtgggagcggtcggatttccccatcatctacgagtc 4513414
>gb|BT002621.1| Arabidopsis thaliana At2g29580/F16P2.4 gene, complete cds Length = 1452 Score = 63.9 bits (32), Expect = 3e-07 Identities = 122/152 (80%) Strand = Plus / Plus Query: 175 aagatctgtgctcgcccttttactgtcttccgttggagacctggtcgggatgcaaggtac 234 ||||||||| | || ||||| || || ||| | ||| |||||||| ||||||| || ||| Sbjct: 133 aagatctgtacccggcctttcacggttttcagatggcgacctggtagggatgcgagatac 192 Query: 235 aagaagacagagatctgccagacgtgctgcaagttgaaaaacgtctgccaggtctgcctt 294 |||||||| || | || ||||| || ||||||||||| || || ||||| || || || Sbjct: 193 aagaagactgaagtttgtcagacatgttgcaagttgaagaatgtgtgccaagtttgtctc 252 Query: 295 ctggaccttgaatatggtctgccagttcaggt 326 |||| ||||| |||||||| ||||||||||| Sbjct: 253 ttggatcttgagtatggtcttccagttcaggt 284
>gb|BC045067.1| Xenopus laevis hypothetical protein MGC53757, mRNA (cDNA clone MGC:53757 IMAGE:5536969), complete cds Length = 1502 Score = 61.9 bits (31), Expect = 1e-06 Identities = 85/103 (82%) Strand = Plus / Plus Query: 235 aagaagacagagatctgccagacgtgctgcaagttgaaaaacgtctgccaggtctgcctt 294 ||||||||||| | ||||| || ||| ||||||||||||| ||||| ||| |||| | Sbjct: 206 aagaagacagaagtgtgccaaacatgcagcaagttgaaaaatgtctgtcagacctgcttg 265 Query: 295 ctggaccttgaatatggtctgccagttcaggttcgcgatactg 337 || |||||||||||||| |||||| |||| || || ||||||| Sbjct: 266 cttgaccttgaatatggactgccaattcaagtacgagatactg 308
>ref|NM_203777.1| Xenopus tropicalis RNA binding motif protein 22 (rbm22), mRNA Length = 1550 Score = 60.0 bits (30), Expect = 5e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 250 tgccagacgtgctgcaagttgaaaaacgtctgccaggtctgccttctggaccttgaatat 309 ||||| |||||| ||||||||||||| ||||| ||| ||| || || |||||||||||| Sbjct: 228 tgccaaacgtgcagcaagttgaaaaatgtctgtcagacctgtctgcttgaccttgaatat 287 Query: 310 ggtctgccagttca 323 || |||||| |||| Sbjct: 288 ggactgccaattca 301
>gb|BC062518.1| Xenopus tropicalis RNA binding motif protein 22, mRNA (cDNA clone MGC:76229 IMAGE:5336540), complete cds Length = 1550 Score = 60.0 bits (30), Expect = 5e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 250 tgccagacgtgctgcaagttgaaaaacgtctgccaggtctgccttctggaccttgaatat 309 ||||| |||||| ||||||||||||| ||||| ||| ||| || || |||||||||||| Sbjct: 228 tgccaaacgtgcagcaagttgaaaaatgtctgtcagacctgtctgcttgaccttgaatat 287 Query: 310 ggtctgccagttca 323 || |||||| |||| Sbjct: 288 ggactgccaattca 301
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Plus Query: 315 gccagttcaggttcgcgatactgcgc 340 ||||||||||||| |||||||||||| Sbjct: 3042776 gccagttcaggttggcgatactgcgc 3042801
>gb|AC155823.8| Mus musculus BAC clone RP23-348C5 from chromosome 8, complete sequence Length = 219597 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 gcaaggtacaagaagacagag 246 ||||||||||||||||||||| Sbjct: 27795 gcaaggtacaagaagacagag 27775
>emb|CR733458.2|CNS0GSPT Tetraodon nigroviridis full-length cDNA Length = 1754 Score = 42.1 bits (21), Expect = 1.2 Identities = 42/49 (85%) Strand = Plus / Plus Query: 158 aatatgacaaggaatgcaagatctgtgctcgcccttttactgtcttccg 206 |||||| ||| || ||||||||||||||||| || ||||| || ||||| Sbjct: 66 aatatggcaaagagtgcaagatctgtgctcggccatttacggttttccg 114
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 ctcggcggcggcgatggcgc 49 |||||||||||||||||||| Sbjct: 2770798 ctcggcggcggcgatggcgc 2770779
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 cggcggcggcgatggcgcac 51 |||||||||||||||||||| Sbjct: 120023 cggcggcggcgatggcgcac 120004
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08 map R2847, complete sequence Length = 100918 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 cggcggcggcgatggcgcac 51 |||||||||||||||||||| Sbjct: 8055 cggcggcggcgatggcgcac 8036
>gb|BC013764.1| Homo sapiens potassium channel tetramerisation domain containing 12, mRNA (cDNA clone MGC:21736 IMAGE:4521096), complete cds Length = 3086 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gcgggacgcgcaggcggacg 79 |||||||||||||||||||| Sbjct: 750 gcgggacgcgcaggcggacg 769
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 tgcgggacgcgcaggcggacggct 82 ||||| |||||||||||||||||| Sbjct: 1095576 tgcggcacgcgcaggcggacggct 1095553
>gb|AY369265.2| Burkholderia cenocepacia phage Bcep1, complete genome Length = 48177 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 tcggcggcggcgatggcgca 50 |||||||||||||||||||| Sbjct: 45212 tcggcggcggcgatggcgca 45231
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 cggcggcggcgatggcgcac 51 |||||||||||||||||||| Sbjct: 27875893 cggcggcggcgatggcgcac 27875874
>gb|AF359381.1| Homo sapiens C13orf2 mRNA, complete cds Length = 6216 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gcgggacgcgcaggcggacg 79 |||||||||||||||||||| Sbjct: 905 gcgggacgcgcaggcggacg 924
>gb|AC113189.11| Homo sapiens chromosome 17, clone RP11-104H15, complete sequence Length = 184349 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gcctcctctcggcggcggcg 42 |||||||||||||||||||| Sbjct: 129801 gcctcctctcggcggcggcg 129782
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 tgcgggacgcgcaggcggacggct 82 ||||| |||||||||||||||||| Sbjct: 2413066 tgcggcacgcgcaggcggacggct 2413043
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 tcggcgacaacccctacgtccgca 145 |||||||||||||| ||||||||| Sbjct: 1794038 tcggcgacaaccccgacgtccgca 1794015
>dbj|AK128363.1| Homo sapiens cDNA FLJ46506 fis, clone THYMU3030752 Length = 3842 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gcgggacgcgcaggcggacg 79 |||||||||||||||||||| Sbjct: 923 gcgggacgcgcaggcggacg 942
>dbj|AK165139.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330029P19 product:sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae), full insert sequence Length = 1097 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 gctctcaatctcgctgcctcctct 31 |||||||||||| ||||||||||| Sbjct: 799 gctctcaatctctctgcctcctct 776
>gb|AF411576.1|AF411573S4 Actinomadura verrucosospora polyketide synthase 2 gene, complete cds Length = 3185 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cgggacgcgcaggcggacgg 80 |||||||||||||||||||| Sbjct: 2700 cgggacgcgcaggcggacgg 2719
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 tcggcggcggcgatggcgca 50 |||||||||||||||||||| Sbjct: 1067915 tcggcggcggcgatggcgca 1067934
>gb|AC160051.2| Mus musculus BAC clone RP24-395P13 from chromosome 9, complete sequence Length = 199433 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 gctctcaatctcgctgcctcctct 31 |||||||||||| ||||||||||| Sbjct: 36323 gctctcaatctctctgcctcctct 36300
>dbj|AK050439.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched library, clone:C730048E03 product:unclassifiable, full insert sequence Length = 2844 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 gctctcaatctcgctgcctcctct 31 |||||||||||| ||||||||||| Sbjct: 795 gctctcaatctctctgcctcctct 772
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 tgcgggacgcgcaggcggacggct 82 ||||| |||||||||||||||||| Sbjct: 322984 tgcggcacgcgcaggcggacggct 323007
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ctcctctcggcggcggcgat 44 |||||||||||||||||||| Sbjct: 24005722 ctcctctcggcggcggcgat 24005703
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 cggcggcggcgatggcgcac 51 |||||||||||||||||||| Sbjct: 27967217 cggcggcggcgatggcgcac 27967198
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tctcggcggcggcgatggcg 48 |||||||||||||||||||| Sbjct: 5940175 tctcggcggcggcgatggcg 5940156
>ref|NM_138444.2| Homo sapiens potassium channel tetramerisation domain containing 12 (KCTD12), mRNA Length = 6216 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gcgggacgcgcaggcggacg 79 |||||||||||||||||||| Sbjct: 905 gcgggacgcgcaggcggacg 924
>gb|AC102224.21| Mus musculus chromosome 3, clone RP24-372D1, complete sequence Length = 196936 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 233 acaagaagacagagatctgccaga 256 ||||| |||||||||||||||||| Sbjct: 23815 acaaggagacagagatctgccaga 23838
>dbj|AK071171.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082E03, full insert sequence Length = 1199 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 cggcggcggcgatggcgcac 51 |||||||||||||||||||| Sbjct: 177 cggcggcggcgatggcgcac 196
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 tgcgggacgcgcaggcggacggct 82 ||||| |||||||||||||||||| Sbjct: 722058 tgcggcacgcgcaggcggacggct 722081
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ggcggcggcgatggcgcacc 52 |||||||||||||||||||| Sbjct: 350655 ggcggcggcgatggcgcacc 350674
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 45 ggcgcaccggctgctgcgggacgcgcag 72 |||||||||| || |||||||||||||| Sbjct: 1220796 ggcgcaccggatggtgcgggacgcgcag 1220769
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ctcctctcggcggcggcgat 44 |||||||||||||||||||| Sbjct: 23933928 ctcctctcggcggcggcgat 23933909
>emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 176388 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ctcctctcggcggcggcgat 44 |||||||||||||||||||| Sbjct: 81674 ctcctctcggcggcggcgat 81693
>gb|AC000403.1|AC000403 Genomic sequence from Human 13, complete sequence Length = 109201 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gcgggacgcgcaggcggacg 79 |||||||||||||||||||| Sbjct: 9213 gcgggacgcgcaggcggacg 9194
>dbj|AP006142.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT08A24, TM0250, complete sequence Length = 104321 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 tccgacttccccatcatctg 110 |||||||||||||||||||| Sbjct: 92194 tccgacttccccatcatctg 92175
>gb|AC152000.3| Ornithorhynchus anatinus chromosome UNK clone OABb-501A1, complete sequence Length = 149165 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 gacttccccatcatctgcgagtca 117 ||||||||||||||| |||||||| Sbjct: 29074 gacttccccatcatcggcgagtca 29097 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,815,008 Number of Sequences: 3902068 Number of extensions: 2815008 Number of successful extensions: 55955 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54709 Number of HSP's gapped (non-prelim): 1234 length of query: 359 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 337 effective length of database: 17,147,199,772 effective search space: 5778606323164 effective search space used: 5778606323164 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
