>PRP40_MOUSE (Q9R1C7) Pre-mRNA-processing factor 40 homolog A (Formin-binding|
           protein 3) (Formin-binding protein 11) (FBP 11)
          Length = 953

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
 Frame = +3

Query: 78  SQPEARAPAAYVQRISSTSMPGPSTAGSNG------SIGYDGNQTATQSVQLQSSSANV- 236
           SQP +R P    +R+S +++   S   ++G      S+G+ G   A   +      AN+ 
Sbjct: 19  SQPPSRGPGDGERRLSGSNLCSSSWVSADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMP 78

Query: 237 PLPYDEAFSFLPPT--MLMGSNQGTASDAM-GLELSQLHHTISQAHPIQPANVS 389
           P+P+      +PP     MG   G  S  M G+ +S  H + +   P  P  V+
Sbjct: 79  PVPHGMMPQMMPPMGGPPMGQMPGMMSSVMSGMMMS--HMSQASMQPALPPGVN 130

>RMT2_ASPFU (Q4X1R1) Arginine N-methyltransferase 2 (EC 2.1.1.-)|
          Length = 424

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 35/127 (27%), Positives = 45/127 (35%), Gaps = 9/127 (7%)
 Frame = +3

Query: 123 SSTSMPGPSTAGSNGSIGYDGNQTATQSVQLQSSSANVPLPYD------EAFSFLPPTML 284
           +ST  PGP    S      D N T T    L      V + ++       A   LP T L
Sbjct: 198 ASTEGPGPDVTSSRY---LDSNLTFTNDRLLDQDQNGVMMAWETEIMSRSAKKLLPTTGL 254

Query: 285 MGSNQGTAS---DAMGLELSQLHHTISQAHPIQPANVSYDNWHHNRDSQYADDFTEDIRM 455
              N G      D    E S   H I +AHP   A +    WH        +   +DI +
Sbjct: 255 RVMNIGHGMGIVDGFIQEQSPAAHHIVEAHPDVVAEMKRKGWHEKPGVVIHEGRWQDI-L 313

Query: 456 KATTARG 476
            A  A+G
Sbjct: 314 PALVAQG 320

>YZN4_CAEEL (P54245) Hypothetical acetylcholine receptor-like protein F18G5.4|
           precursor
          Length = 615

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
 Frame = +3

Query: 204 SVQLQSSSANVPLPYDEAFSFLPPTMLMGSNQGTASDAMGLELSQLHHTISQ------AH 365
           SVQ Q SSA +P+P+ +         + GS  GT      L  S L HT+ +       H
Sbjct: 77  SVQEQHSSAVIPMPHFDQNRLEQALRIKGSIDGTEE---ALYRSLLDHTVYEKDVRPCIH 133

Query: 366 PIQPANVSY 392
             QP NV++
Sbjct: 134 HSQPTNVTF 142

>GP110_HUMAN (Q5T601) Probable G-protein coupled receptor 110 precursor|
           (G-protein coupled receptor PGR19) (G-protein coupled
           receptor KPG_012)
          Length = 911

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = -3

Query: 434 IISILTITVVMPIIV---ADICWLNW 366
           IIS++TI V  P       D+CWLNW
Sbjct: 713 IISVITIAVTQPSNTYKRKDVCWLNW 738

>YL8J_SCHPO (Q9UTA1) Hypothetical zinc finger protein C25B8.19c in chromosome I|
          Length = 522

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
 Frame = +3

Query: 81  QPEARA----PAAYVQRISSTSMPGPSTAG-SNGSIGYDGNQTATQSVQLQSSSAN---- 233
           QP +R     P     R+SS + P  +T   +NG+   + ++++T         AN    
Sbjct: 311 QPSSRDLQNHPTVDESRLSSVAPPASNTLNHANGNQAENASESSTSQSNDSQGPANTSYP 370

Query: 234 --VPLPYDEAFSFLPPTMLMGSNQGTAS----DAMGLELS---QLHHTISQAHPIQPANV 386
             VPLP D   +       +  N    S    D M  ELS    L    +QAHP+   + 
Sbjct: 371 VSVPLPNDAENNHT-----LSRNPYIPSLNFKDNMSAELSVVATLASNSAQAHPMGQQSD 425

Query: 387 SYDNWHHNRDSQ 422
           S  + HHN D +
Sbjct: 426 SNYSDHHNNDKR 437

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
 Frame = +3

Query: 105  AYVQRISSTSMPGPSTAGSNGSIGYD------------GNQTATQSVQLQSSSANVPLPY 248
            A VQ   S S+PG +  G+  S+  D             + T+  +  L S++ +V  P 
Sbjct: 1766 ARVQLQKSASVPGSTNVGAPSSLSLDSTTASVETSASISSSTSNGNSSLTSAAIHVQKPQ 1825

Query: 249  DEAFSFLPPTMLMGSNQGTASDAMGLELSQLHHTISQAH 365
               F     T   G++   +S +   ++S  H  +   H
Sbjct: 1826 QSTFVEEEHTKKSGTSTSQSSSSSSKKISSTHDKLHSKH 1864

>CTND2_MOUSE (O35927) Catenin delta-2 (Neural plakophilin-related ARM-repeat|
           protein) (NPRAP) (Neurojungin)
          Length = 1247

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 16/118 (13%)
 Frame = +3

Query: 138 PGPSTAGSNGSIGYDGNQTATQSVQLQSSSANVPLPYDEAFSFLPPTMLMGSNQG----- 302
           PG   AGS  S        A +   LQS   ++   Y++     PP   +  +QG     
Sbjct: 385 PGSLAAGSRASYSSQHGHLAPELRALQSPEHHIDPIYEDRVYQKPPMRSLSQSQGDPLPP 444

Query: 303 ---------TASDAMGLELSQLHHTISQAHPIQPANVSYD--NWHHNRDSQYADDFTE 443
                    TA  + G++   L  T SQ  P   A  ++   ++     S YAD + +
Sbjct: 445 AHTGTFRTSTAPSSPGVDSVPLQRTGSQHGPQNAAAATFQRASYAAGPASNYADPYRQ 502

>LNT_CHLTE (Q8KCC4) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP|
           N-acyltransferase)
          Length = 533

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 240 LPYDEAFSFLPPTMLMGSNQGTASDAMGLELSQLHHTISQAHPIQPANV 386
           +PY E F +L    L  S  G +S A G E + +H T     P++ AN+
Sbjct: 362 VPYSEYFPWLE--RLSFSMSGISSWAKGREATVMHFTSRDGQPVRMANI 408

>GSC_BRARE (P53544) Homeobox protein goosecoid (ZGSC)|
          Length = 240

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 18/99 (18%)
 Frame = +3

Query: 123 SSTSMPGPSTAGSNGSIGYDGNQTATQSVQLQSSSA--------------NVPLPYDEAF 260
           S T  P P+    NG IGY+        VQ  +  A               +P  YD A 
Sbjct: 51  SHTGPPAPNLQSVNGRIGYNNYYYGQLHVQGPTGPACCGAIPTLGSQQCPCIPTGYDSAG 110

Query: 261 SFL----PPTMLMGSNQGTASDAMGLELSQLHHTISQAH 365
           S L    P  M+   N GT S      L+QLH    + H
Sbjct: 111 SVLISPVPHQMMSYMNVGTLSRTELQLLNQLHCRRKRRH 149

>C1QB_HUMAN (P02746) Complement C1q subcomponent subunit B precursor|
          Length = 251

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 141 GPSTAGSNGSIGYDGNQTATQSVQLQSS-SANVPLPYDEAFSF 266
           GP   G+ G  G  G+  ATQ +   ++ + NVPL  D+   F
Sbjct: 98  GPGAPGAPGPKGESGDYKATQKIAFSATRTINVPLRRDQTIRF 140

>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)|
          Length = 907

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 111 VQRISSTSMPGPSTAGSNGSIGYDGNQTATQSVQLQSSSANVPLPYDEAFSFLPPT 278
           V  ++ST     ST G   + G+ G +T+T+        +  P P   A ++LPP+
Sbjct: 769 VPTVTSTGGKANSTTGGKHTTGH-GARTSTEPTTDYGGDSTTPRPRYNATTYLPPS 823

>TAL1_ERWCT (Q6D8W0) Transaldolase 1 (EC 2.2.1.2)|
          Length = 316

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 336 QLHHTISQAHPIQPANVSYDNWHHNRDSQYADDFTEDIRMKA 461
           QL  +    HP  P + +   W H++D+   D   E IR+ A
Sbjct: 261 QLTPSTEAFHPPSPLSEAEFRWEHHQDAMAVDKLAEGIRLFA 302

>IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 gamma 3|
            (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II)
            (eIF4GII)
          Length = 1579

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +3

Query: 93   RAPAAYVQRISSTSMPGPSTAGSNGSIGYDGNQTATQSVQLQSSSANVPLPYDEAFSFLP 272
            R+ A+ + R S    P PS + S   + +D  +  T    +    ++ P+P   A +  P
Sbjct: 1087 RSSASSLNRFSPLQPPAPSGSPSATPLEFDSRRALTSRGSMGREKSDKPIP---AGTARP 1143

Query: 273  PTMLMGSNQ 299
             T L GS++
Sbjct: 1144 NTFLRGSSK 1152


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,347,232
Number of Sequences: 219361
Number of extensions: 1201637
Number of successful extensions: 3599
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3591
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)