>gb|AY105945.1| Zea mays PCO115682 mRNA sequence
          Length = 947

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                       
Query: 66  gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctcg 125
           |||||||||||||| ||| |||||||||||||||| || |||||||||| ||||||||||
Sbjct: 33  gcaatggagtccaccaagctctccgcgctgctggtgctcgccatgctcgcgctctcctcg 92

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                          
Query: 67       caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
                ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 32828010 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 32827953

>dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F11, full
           insert sequence
          Length = 1255

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 67  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 59  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 116

>dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F10, full
           insert sequence
          Length = 1242

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 67  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 59  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 116

>dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H11, full
           insert sequence
          Length = 1251

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 67  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 55  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 112

>dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094H13, full
           insert sequence
          Length = 1272

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 67  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 63  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 120

>dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F03, full
           insert sequence
          Length = 1257

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 67  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 61  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 118

>emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0413E07, complete
             sequence
          Length = 76546

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 67    caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
             ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 23245 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 23188

>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
             complete sequence
          Length = 142556

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 67    caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
             ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 90297 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 90240

>ref|XM_474092.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 783

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 69  atggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
           ||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 1   atggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 56

>gb|AC124425.3| Mus musculus BAC clone RP24-230N16 from chromosome 5, complete sequence
          Length = 178931

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 314   cctcacccccgaccccgacccc 335
             ||||||||||||||||||||||
Sbjct: 45505 cctcacccccgaccccgacccc 45484

>gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome 5, complete sequence
          Length = 245443

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 314    cctcacccccgaccccgacccc 335
              ||||||||||||||||||||||
Sbjct: 240671 cctcacccccgaccccgacccc 240650

>emb|AL607108.17| Mouse DNA sequence from clone RP23-42F6 on chromosome 11, complete
              sequence
          Length = 202842

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 314    cctcacccccgaccccgacccc 335
              ||||||||||||||||||||||
Sbjct: 133182 cctcacccccgaccccgacccc 133203

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 170     tggcacgccgtcgagcggcacgccctcgg 198
               ||||| ||||||||||||| |||||||||
Sbjct: 1763519 tggcaggccgtcgagcggcgcgccctcgg 1763491



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 302     aggcgtgccctccctcaccc 321
               ||||||||||||||||||||
Sbjct: 2093863 aggcgtgccctccctcaccc 2093882

>ref|XM_862060.1| PREDICTED: Canis familiaris hypothetical protein LOC610656
           (LOC610656), mRNA
          Length = 1146

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 404 cgccgccccgaccgcgggcgg 424
           |||||||||||||||||||||
Sbjct: 306 cgccgccccgaccgcgggcgg 286

>emb|CR522871.1| Desulfotalea psychrophila LSv54, large plasmid
          Length = 121587

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 94     tgctggttctggccatgctcg 114
              |||||||||||||||||||||
Sbjct: 104132 tgctggttctggccatgctcg 104112

>gb|DQ397621.1| Cenarchaeum symbiosum clone C21E11, complete sequence
          Length = 41700

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 57    gtggttgctgcaatggagtcc 77
             |||||||||||||||||||||
Sbjct: 13074 gtggttgctgcaatggagtcc 13094

>gb|U31090.1|RSU31090 Rhodobacter sphaeroides FliH (fliH) gene, partial cds, FliI (fliI)
           and FliJ (fliJ) genes, complete cds
          Length = 2190

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 170 tggcacgccgtcgagcggcacgccctcgg 198
           ||||| ||||||||||||| |||||||||
Sbjct: 806 tggcaggccgtcgagcggcgcgccctcgg 778

>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 176     gccgtcgagcggcacgccct 195
               ||||||||||||||||||||
Sbjct: 2793585 gccgtcgagcggcacgccct 2793604

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 193     cctcgggcggcggcatcagc 212
               ||||||||||||||||||||
Sbjct: 1928034 cctcgggcggcggcatcagc 1928015

>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 176     gccgtcgagcggcacgccct 195
               ||||||||||||||||||||
Sbjct: 4021080 gccgtcgagcggcacgccct 4021099

>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0088K21, complete sequence
          Length = 153239

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 355    ctccggtcatcggcgtcgtc 374
              ||||||||||||||||||||
Sbjct: 101127 ctccggtcatcggcgtcgtc 101108

>gb|AC116677.11| Mus musculus chromosome 3, clone RP23-111M12, complete sequence
          Length = 214206

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      caggcacagcagcaccccac 21
              ||||||||||||||||||||
Sbjct: 104259 caggcacagcagcaccccac 104240

>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 357     ccggtcatcggcgtcgtcgg 376
               ||||||||||||||||||||
Sbjct: 3541023 ccggtcatcggcgtcgtcgg 3541042

>emb|X97201.1|RSFLIIGEN R.sphaeroides fliI gene
          Length = 1341

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 171 ggcacgccgtcgagcggcacgccctcgg 198
           |||| ||||||||||||| |||||||||
Sbjct: 365 ggcaggccgtcgagcggcgcgccctcgg 338

>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 176     gccgtcgagcggcacgccct 195
               ||||||||||||||||||||
Sbjct: 3727689 gccgtcgagcggcacgccct 3727708

>gb|AC008763.9| Homo sapiens chromosome 19 clone CTD-3214H19, complete sequence
          Length = 177962

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 319    cccccgaccccgaccccgtc 338
              ||||||||||||||||||||
Sbjct: 161524 cccccgaccccgaccccgtc 161505

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 355      ctccggtcatcggcgtcgtc 374
                ||||||||||||||||||||
Sbjct: 22841410 ctccggtcatcggcgtcgtc 22841391

>gb|AC008812.7|AC008812 Homo sapiens chromosome 19 clone CTD-2102F19, complete sequence
          Length = 143619

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   cccccgaccccgaccccgtc 338
             ||||||||||||||||||||
Sbjct: 33822 cccccgaccccgaccccgtc 33803

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 188     cacgccctcgggcggcggca 207
               ||||||||||||||||||||
Sbjct: 7955812 cacgccctcgggcggcggca 7955831

>dbj|AK062389.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-C07, full
           insert sequence
          Length = 745

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 365 cggcgtcgtcggtggcaccgtcactccg 392
           |||||||| ||| |||||||||||||||
Sbjct: 427 cggcgtcgacggcggcaccgtcactccg 400

>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 176     gccgtcgagcggcacgccct 195
               ||||||||||||||||||||
Sbjct: 3420385 gccgtcgagcggcacgccct 3420404

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 355      ctccggtcatcggcgtcgtc 374
                ||||||||||||||||||||
Sbjct: 23151320 ctccggtcatcggcgtcgtc 23151301


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,035,998
Number of Sequences: 3902068
Number of extensions: 2035998
Number of successful extensions: 44564
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43583
Number of HSP's gapped (non-prelim): 981
length of query: 428
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 406
effective length of database: 17,147,199,772
effective search space: 6961763107432
effective search space used: 6961763107432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)