ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet65g03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185489.1| Oryza sativa (japonica cultivar-group), Ozsa858... 107 3e-20
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
3dbj|AP000391.2| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
4dbj|AK102435.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 3e-20
5dbj|AK061998.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 3e-20
6emb|CR318645.2| Zebrafish DNA sequence from clone CH211-161F7 in... 46 0.11
7ref|XM_682914.1| PREDICTED: Danio rerio similar to Sex comb on m... 46 0.11
8ref|NM_126317.2| Arabidopsis thaliana protein binding / zinc ion... 42 1.7
9gb|AC122469.4| Mus musculus chromosome 6 clone RP24-318I5, compl... 42 1.7
10gb|AC004136.3| Arabidopsis thaliana chromosome 2 BAC T8K22 genom... 42 1.7
11ref|XM_321012.2| Anopheles gambiae str. PEST ENSANGP00000011345 ... 42 1.7
12ref|XM_314382.2| Anopheles gambiae str. PEST ENSANGP00000016013 ... 42 1.7
13gb|AC146598.4| Mus musculus BAC clone RP24-129K7 from 6, complet... 42 1.7
14ref|XM_630115.1| Dictyostelium discoideum hypothetical protein (... 40 6.5
15gb|AC134595.3| Mus musculus BAC clone RP23-388E14 from chromosom... 40 6.5
16gb|CP000114.1| Streptococcus agalactiae A909, complete genome 40 6.5
17gb|AC124467.3| Mus musculus BAC clone RP24-163L18 from chromosom... 40 6.5
18gb|AC126459.3| Mus musculus BAC clone RP23-181A8 from chromosome... 40 6.5
19emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 6.5
20gb|AE014213.1| Streptococcus agalactiae 2603V/R section 23 of 10... 40 6.5
21emb|AL163652.1|ATT28J14 Arabidopsis thaliana DNA chromosome 5, B... 40 6.5
22gb|AC157780.9| Mus musculus chromosome 3, clone RP23-331L5, comp... 40 6.5
23emb|CR381585.11| Zebrafish DNA sequence from clone DKEY-27P7 in ... 40 6.5
24ref|NM_001004089.1| Rattus norvegicus signal-induced proliferati... 40 6.5
25gb|AE012057.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.5
26gb|AC024587.5| Homo sapiens chromosome 5 clone RP11-252I13, comp... 40 6.5
27gb|AC020901.8|AC020901 Homo sapiens chromosome 5 clone CTC-527N1... 40 6.5
28gb|AC008800.5|AC008800 Homo sapiens chromosome 5 clone CTD-2062D... 40 6.5
29gb|AY337271.1| Eleutherodactylus omiltemanus cellular myelocytom... 40 6.5
30gb|AC091656.3| Rattus norvegicus strain Brown Norway clone RP31-... 40 6.5
31dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 40 6.5
32dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 6.5
33dbj|AB091474.1| Rattus norvegicus SPA-1 mRNA for GTPase-activati... 40 6.5
34emb|X54926.1|AT12AENH A.thaliana 12-A enhancer DNA 40 6.5
35gb|AY741135.1| Arabidopsis thaliana BON2 mRNA, complete cds 40 6.5
36emb|AL163912.1|ATT2I1 Arabidopsis thaliana DNA chromosome 5, BAC... 40 6.5
37gb|AC146688.1| Gallus gallus BAC clone CH261-24P18 from chromoso... 40 6.5
38emb|AL833774.4| Mouse DNA sequence from clone RP23-383I16 on chr... 40 6.5
39emb|AL607109.21| Mouse DNA sequence from clone RP23-352D7 on chr... 40 6.5
40emb|AL669977.8| Mouse DNA sequence from clone RP23-197M19 on chr... 40 6.5 
>ref|NM_185489.1| Oryza sativa (japonica cultivar-group), Ozsa8586 predicted mRNA
          Length = 1302

 Score =  107 bits (54), Expect = 3e-20
 Identities = 105/122 (86%)
 Strand = Plus / Plus

                                                                       
Query: 303 gctgtgaagactgttttcatctccgctgtacgttttgctacgtccatggaaatttcatcc 362
           |||||||||| ||| |||||||| ||  | |||||||||||||||||||||| | |||| 
Sbjct: 481 gctgtgaagaatgtcttcatctctgccattcgttttgctacgtccatggaaagtccatct 540

                                                                       
Query: 363 gctcccgtctttgatgacctcaagactgctgctcaagagcagattgacttcatgctccat 422
            ||||  |||| ||||| ||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 541 cctcctttcttggatgatctcaagacttctgctcaggagcaaattgacttcatgctccat 600

             
Query: 423 ga 424
           ||
Sbjct: 601 ga 602



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 30  gctgagtatgaccattatgtcaagttgttgaagtttatgtatctt 74
           ||||| ||||| |||||||||||| |||||||||| || ||||||
Sbjct: 208 gctgactatgaacattatgtcaaggtgttgaagttaatatatctt 252



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 182 ataccttgaatctgcctcctgggacgaaaaagaggaggaggagatttt 229
           |||||||||| | || || ||||| |||||||||||||| ||||||||
Sbjct: 360 ataccttgaagcagcttcatgggatgaaaaagaggaggaagagatttt 407
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  107 bits (54), Expect = 3e-20
 Identities = 105/122 (86%)
 Strand = Plus / Minus

                                                                           
Query: 303     gctgtgaagactgttttcatctccgctgtacgttttgctacgtccatggaaatttcatcc 362
               |||||||||| ||| |||||||| ||  | |||||||||||||||||||||| | |||| 
Sbjct: 1544081 gctgtgaagaatgtcttcatctctgccattcgttttgctacgtccatggaaagtccatct 1544022

                                                                           
Query: 363     gctcccgtctttgatgacctcaagactgctgctcaagagcagattgacttcatgctccat 422
                ||||  |||| ||||| ||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 1544021 cctcctttcttggatgatctcaagacttctgctcaggagcaaattgacttcatgctccat 1543962

                 
Query: 423     ga 424
               ||
Sbjct: 1543961 ga 1543960



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                            
Query: 30      gctgagtatgaccattatgtcaagttgttgaagtttatgtatctt 74
               ||||| ||||| |||||||||||| |||||||||| || ||||||
Sbjct: 1544354 gctgactatgaacattatgtcaaggtgttgaagttaatatatctt 1544310



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                               
Query: 182     ataccttgaatctgcctcctgggacgaaaaagaggaggaggagatttt 229
               |||||||||| | || || ||||| |||||||||||||| ||||||||
Sbjct: 1544202 ataccttgaagcagcttcatgggatgaaaaagaggaggaagagatttt 1544155
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>dbj|AP000391.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0538C01
          Length = 155643

 Score =  107 bits (54), Expect = 3e-20
 Identities = 105/122 (86%)
 Strand = Plus / Minus

                                                                         
Query: 303   gctgtgaagactgttttcatctccgctgtacgttttgctacgtccatggaaatttcatcc 362
             |||||||||| ||| |||||||| ||  | |||||||||||||||||||||| | |||| 
Sbjct: 72805 gctgtgaagaatgtcttcatctctgccattcgttttgctacgtccatggaaagtccatct 72746

                                                                         
Query: 363   gctcccgtctttgatgacctcaagactgctgctcaagagcagattgacttcatgctccat 422
              ||||  |||| ||||| ||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 72745 cctcctttcttggatgatctcaagacttctgctcaggagcaaattgacttcatgctccat 72686

               
Query: 423   ga 424
             ||
Sbjct: 72685 ga 72684



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                          
Query: 30    gctgagtatgaccattatgtcaagttgttgaagtttatgtatctt 74
             ||||| ||||| |||||||||||| |||||||||| || ||||||
Sbjct: 73078 gctgactatgaacattatgtcaaggtgttgaagttaatatatctt 73034



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 182   ataccttgaatctgcctcctgggacgaaaaagaggaggaggagatttt 229
             |||||||||| | || || ||||| |||||||||||||| ||||||||
Sbjct: 72926 ataccttgaagcagcttcatgggatgaaaaagaggaggaagagatttt 72879
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>dbj|AK102435.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093J06, full
           insert sequence
          Length = 1823

 Score =  107 bits (54), Expect = 3e-20
 Identities = 105/122 (86%)
 Strand = Plus / Plus

                                                                       
Query: 303 gctgtgaagactgttttcatctccgctgtacgttttgctacgtccatggaaatttcatcc 362
           |||||||||| ||| |||||||| ||  | |||||||||||||||||||||| | |||| 
Sbjct: 788 gctgtgaagaatgtcttcatctctgccattcgttttgctacgtccatggaaagtccatct 847

                                                                       
Query: 363 gctcccgtctttgatgacctcaagactgctgctcaagagcagattgacttcatgctccat 422
            ||||  |||| ||||| ||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 848 cctcctttcttggatgatctcaagacttctgctcaggagcaaattgacttcatgctccat 907

             
Query: 423 ga 424
           ||
Sbjct: 908 ga 909



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 30  gctgagtatgaccattatgtcaagttgttgaagtttatgtatctt 74
           ||||| ||||| |||||||||||| |||||||||| || ||||||
Sbjct: 515 gctgactatgaacattatgtcaaggtgttgaagttaatatatctt 559



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 182 ataccttgaatctgcctcctgggacgaaaaagaggaggaggagatttt 229
           |||||||||| | || || ||||| |||||||||||||| ||||||||
Sbjct: 667 ataccttgaagcagcttcatgggatgaaaaagaggaggaagagatttt 714
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>dbj|AK061998.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D01, full
           insert sequence
          Length = 1315

 Score =  107 bits (54), Expect = 3e-20
 Identities = 105/122 (86%)
 Strand = Plus / Plus

                                                                       
Query: 303 gctgtgaagactgttttcatctccgctgtacgttttgctacgtccatggaaatttcatcc 362
           |||||||||| ||| |||||||| ||  | |||||||||||||||||||||| | |||| 
Sbjct: 313 gctgtgaagaatgtcttcatctctgccattcgttttgctacgtccatggaaagtccatct 372

                                                                       
Query: 363 gctcccgtctttgatgacctcaagactgctgctcaagagcagattgacttcatgctccat 422
            ||||  |||| ||||| ||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 373 cctcctttcttggatgatctcaagacttctgctcaggagcaaattgacttcatgctccat 432

             
Query: 423 ga 424
           ||
Sbjct: 433 ga 434



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                       
Query: 30 gctgagtatgaccattatgtcaagttgttgaagtttatgtatctt 74
          ||||| ||||| |||||||||||| |||||||||| || ||||||
Sbjct: 40 gctgactatgaacattatgtcaaggtgttgaagttaatatatctt 84



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 182 ataccttgaatctgcctcctgggacgaaaaagaggaggaggagatttt 229
           |||||||||| | || || ||||| |||||||||||||| ||||||||
Sbjct: 192 ataccttgaagcagcttcatgggatgaaaaagaggaggaagagatttt 239
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>emb|CR318645.2| Zebrafish DNA sequence from clone CH211-161F7 in linkage group 11,
            complete sequence
          Length = 138050

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 202  gggacgaaaaagaggaggaggag 224
            |||||||||||||||||||||||
Sbjct: 2908 gggacgaaaaagaggaggaggag 2886
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>ref|XM_682914.1| PREDICTED: Danio rerio similar to Sex comb on midleg-like protein 2
           (LOC559561), mRNA
          Length = 1575

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 202 gggacgaaaaagaggaggaggag 224
           |||||||||||||||||||||||
Sbjct: 51  gggacgaaaaagaggaggaggag 29
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>ref|NM_126317.2| Arabidopsis thaliana protein binding / zinc ion binding AT2G02620
            mRNA, complete cds
          Length = 2120

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 3    aactgcattgaagtcgagtgc 23
            |||||||||||||||||||||
Sbjct: 1559 aactgcattgaagtcgagtgc 1579
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>gb|AC122469.4| Mus musculus chromosome 6 clone RP24-318I5, complete sequence
          Length = 181769

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 203   ggacgaaaaagaggaggaggagatt 227
             |||||| ||||||||||||||||||
Sbjct: 71487 ggacgagaaagaggaggaggagatt 71463
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>gb|AC004136.3| Arabidopsis thaliana chromosome 2 BAC T8K22 genomic sequence, complete
             sequence
          Length = 98957

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     aactgcattgaagtcgagtgc 23
             |||||||||||||||||||||
Sbjct: 34155 aactgcattgaagtcgagtgc 34135
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>ref|XM_321012.2| Anopheles gambiae str. PEST ENSANGP00000011345
           (ENSANGG00000008856), partial mRNA
          Length = 1086

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 80  agaatcgatcgaggaagagtt 100
           |||||||||||||||||||||
Sbjct: 57  agaatcgatcgaggaagagtt 77
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>ref|XM_314382.2| Anopheles gambiae str. PEST ENSANGP00000016013
           (ENSANGG00000013524), partial mRNA
          Length = 1074

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 80  agaatcgatcgaggaagagtt 100
           |||||||||||||||||||||
Sbjct: 57  agaatcgatcgaggaagagtt 77
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>gb|AC146598.4| Mus musculus BAC clone RP24-129K7 from 6, complete sequence
          Length = 168141

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 203    ggacgaaaaagaggaggaggagatt 227
              |||||| ||||||||||||||||||
Sbjct: 150548 ggacgagaaagaggaggaggagatt 150524
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>ref|XM_630115.1| Dictyostelium discoideum hypothetical protein (DDB0183890), partial
           mRNA
          Length = 1263

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  caagttgttgaagtttatgt 69
           ||||||||||||||||||||
Sbjct: 637 caagttgttgaagtttatgt 618
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>gb|AC134595.3| Mus musculus BAC clone RP23-388E14 from chromosome 15, complete sequence
          Length = 189263

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 381    ctcaagactgctgctcaaga 400
              ||||||||||||||||||||
Sbjct: 143787 ctcaagactgctgctcaaga 143806
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>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 254    agaagctgctgcacctttgttagc 277
              |||||||||||||| |||||||||
Sbjct: 518718 agaagctgctgcacgtttgttagc 518741
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>gb|AC124467.3| Mus musculus BAC clone RP24-163L18 from chromosome 15, complete sequence
          Length = 169366

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 381    ctcaagactgctgctcaaga 400
              ||||||||||||||||||||
Sbjct: 159441 ctcaagactgctgctcaaga 159422
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>gb|AC126459.3| Mus musculus BAC clone RP23-181A8 from chromosome 9, complete sequence
          Length = 217068

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   gaaaaagaggaggaggagat 226
             ||||||||||||||||||||
Sbjct: 70355 gaaaaagaggaggaggagat 70374
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 240     cagaccctgggtccagaagc 259
               ||||||||||||||||||||
Sbjct: 4785824 cagaccctgggtccagaagc 4785805
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>gb|AE014213.1| Streptococcus agalactiae 2603V/R section 23 of 100 of the complete
             genome
          Length = 24024

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 254   agaagctgctgcacctttgttagc 277
             |||||||||||||| |||||||||
Sbjct: 14269 agaagctgctgcacgtttgttagc 14292
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>emb|AL163652.1|ATT28J14 Arabidopsis thaliana DNA chromosome 5, BAC clone T28J14 (ESSA project)
          Length = 104607

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 208    aaaaagaggaggaggagatt 227
              ||||||||||||||||||||
Sbjct: 104221 aaaaagaggaggaggagatt 104202
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>gb|AC157780.9| Mus musculus chromosome 3, clone RP23-331L5, complete sequence
          Length = 184569

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    acgaaaaagaggaggaggag 224
              ||||||||||||||||||||
Sbjct: 105474 acgaaaaagaggaggaggag 105455
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>emb|CR381585.11| Zebrafish DNA sequence from clone DKEY-27P7 in linkage group 20
             Contains the gene for a novel protein similar to mouse and
             human integrin beta 1 binding protein 1 (ITGB1BP1), the
             gene for a novel protein similar to vertebrate development
             and differentiation enhancing factor 2 (DDEF2) and three
             CpG islands, complete sequence
          Length = 209698

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   agattttacaatttgctcag 242
             ||||||||||||||||||||
Sbjct: 48079 agattttacaatttgctcag 48098
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>ref|NM_001004089.1| Rattus norvegicus signal-induced proliferation-associated gene 1
            (Sipa1), mRNA
          Length = 3123

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 246  ctgggtccagaagctgctgc 265
            ||||||||||||||||||||
Sbjct: 2209 ctgggtccagaagctgctgc 2228
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>gb|AE012057.1| Xanthomonas axonopodis pv. citri str. 306,  section 435 of 469 of the
            complete genome
          Length = 12791

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 240  cagaccctgggtccagaagc 259
            ||||||||||||||||||||
Sbjct: 9286 cagaccctgggtccagaagc 9267
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>gb|AC024587.5| Homo sapiens chromosome 5 clone RP11-252I13, complete sequence
          Length = 178492

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     tcaagttgttgaagtttatg 68
              ||||||||||||||||||||
Sbjct: 146743 tcaagttgttgaagtttatg 146762
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>gb|AC020901.8|AC020901 Homo sapiens chromosome 5 clone CTC-527N11, complete sequence
          Length = 180636

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 107   tgttaagtcagctcttggcgttct 130
             ||||||||||||||||||| ||||
Sbjct: 50015 tgttaagtcagctcttggcattct 50038
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>gb|AC008800.5|AC008800 Homo sapiens chromosome 5 clone CTD-2062D19, complete sequence
          Length = 85119

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    tcaagttgttgaagtttatg 68
             ||||||||||||||||||||
Sbjct: 20619 tcaagttgttgaagtttatg 20638
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>gb|AY337271.1| Eleutherodactylus omiltemanus cellular myelocytomatosis (c-myc) gene,
            exons 2 and 3 and partial cds
          Length = 1255

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 204  gacgaaaaagaggaggaggagatt 227
            |||||| |||||||||||||||||
Sbjct: 998  gacgaagaagaggaggaggagatt 1021
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>gb|AC091656.3| Rattus norvegicus strain Brown Norway clone RP31-236J24, complete
             sequence
          Length = 132420

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 417   ctccatgatggtgatgatcc 436
             ||||||||||||||||||||
Sbjct: 96769 ctccatgatggtgatgatcc 96750
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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    gtcagctcttggcgttcttc 132
              ||||||||||||||||||||
Sbjct: 390049 gtcagctcttggcgttcttc 390030
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 116    agctcttggcgttcttcgagcagc 139
              |||||||||||||| |||||||||
Sbjct: 498514 agctcttggcgttcatcgagcagc 498491
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>dbj|AB091474.1| Rattus norvegicus SPA-1 mRNA for GTPase-activating protein, complete
            cds
          Length = 3123

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 246  ctgggtccagaagctgctgc 265
            ||||||||||||||||||||
Sbjct: 2209 ctgggtccagaagctgctgc 2228
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>emb|X54926.1|AT12AENH A.thaliana 12-A enhancer DNA
          Length = 275

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 208 aaaaagaggaggaggagatt 227
           ||||||||||||||||||||
Sbjct: 105 aaaaagaggaggaggagatt 86
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>gb|AY741135.1| Arabidopsis thaliana BON2 mRNA, complete cds
          Length = 2011

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 208 aaaaagaggaggaggagatt 227
           ||||||||||||||||||||
Sbjct: 82  aaaaagaggaggaggagatt 63
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>emb|AL163912.1|ATT2I1 Arabidopsis thaliana DNA chromosome 5, BAC clone T2I1 (ESSA project)
          Length = 116763

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   aaaaagaggaggaggagatt 227
             ||||||||||||||||||||
Sbjct: 15137 aaaaagaggaggaggagatt 15118
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>gb|AC146688.1| Gallus gallus BAC clone CH261-24P18 from chromosome unknown, complete
             sequence
          Length = 212571

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 442   ttgttatgatggatgaaaga 461
             ||||||||||||||||||||
Sbjct: 60009 ttgttatgatggatgaaaga 59990
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>emb|AL833774.4| Mouse DNA sequence from clone RP23-383I16 on chromosome 2, complete
              sequence
          Length = 194045

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    aaagaggaggaggagatttt 229
              ||||||||||||||||||||
Sbjct: 173808 aaagaggaggaggagatttt 173789
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>emb|AL607109.21| Mouse DNA sequence from clone RP23-352D7 on chromosome 4, complete
             sequence
          Length = 187252

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 201   tgggacgaaaaagaggaggaggag 224
             ||||| ||||||||||||||||||
Sbjct: 34293 tgggaagaaaaagaggaggaggag 34316
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>emb|AL669977.8| Mouse DNA sequence from clone RP23-197M19 on chromosome 4, complete
            sequence
          Length = 97114

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  aagaggaggaggagatttta 230
            ||||||||||||||||||||
Sbjct: 9470 aagaggaggaggagatttta 9489


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,948,849
Number of Sequences: 3902068
Number of extensions: 4948849
Number of successful extensions: 141460
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141268
Number of HSP's gapped (non-prelim): 192
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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