| Clone Name | baet65b10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082M08, full insert sequence Length = 1609 Score = 490 bits (247), Expect = e-135 Identities = 385/431 (89%) Strand = Plus / Plus Query: 1 cttgttgactacaatgtcaagaaaatgtttgaagttaagctcaaggagataaagtcaact 60 |||||||| ||||||| ||||| |||||||| ||||| || ||||||||||||| ||| Sbjct: 859 cttgttgagtacaatgaaaagaagatgtttgaggttaaacttaaggagataaagttaaca 918 Query: 61 ctgaccactatgatcaatgaagaagctgaaatatctgaagtaactgaggttgtcaagcaa 120 ||||| || |||||||||||||| ||||||||||||||||| || || | |||||||||| Sbjct: 919 ctgacaacaatgatcaatgaagaggctgaaatatctgaagtcacagaagctgtcaagcaa 978 Query: 121 caggttaaagatgctaaatttcctgatatagaggttgttcgcatgctgtgggatgtgctt 180 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 979 caggtgaaagatgctaaatttcctgatatagaggttgttcgcatgctatgggatgtgctg 1038 Query: 181 atggaggctgttcagtggtctggaaagaatcagcagcaaaattctaattcagcacttcgg 240 ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 1039 atggaggctgttcagtggtctgggaagaaccagcaacaaaattctaattcagcacttcgg 1098 Query: 241 caggtgaatgcttgggctggtcttatgaatgcattttgcacaagtggaaagctagaactg 300 |||||||| || |||||||| ||| |||||||||| ||||||||||| | ||| ||||| Sbjct: 1099 caggtgaaagcatgggctggccttttgaatgcattctgcacaagtggcaggcttgaactc 1158 Query: 301 gaactcatatacaaggtccagacacagtgttatgaggacgctaagttgatgaagctgttc 360 |||||||||||||| || ||||||||||| |||||||| |||||| |||||||||| || Sbjct: 1159 gaactcatatacaaagttcagacacagtgctatgaggatgctaagctgatgaagctattt 1218 Query: 361 cctgaaattataagatctctgtatgatcaagatgtcctcgctgaagataccatacttctt 420 |||||||| || ||| | |||||||| ||||||||||| |||||||||||||| || ||| Sbjct: 1219 cctgaaataatcagaacgctgtatgaccaagatgtcctagctgaagataccatcctcctt 1278 Query: 421 tggttccgcaa 431 ||||||||||| Sbjct: 1279 tggttccgcaa 1289
>gb|AY596583.1| Saccharum officinarum clone SCBGLR1003E06, complete sequence Length = 1627 Score = 420 bits (212), Expect = e-114 Identities = 374/428 (87%) Strand = Plus / Minus Query: 1 cttgttgactacaatgtcaagaaaatgtttgaagttaagctcaaggagataaagtcaact 60 |||||||| ||||||| ||||| |||||||||||||| || ||||||||||||||||| Sbjct: 838 cttgttgagtacaatgaaaagaagatgtttgaagttaaacttaaggagataaagtcaaca 779 Query: 61 ctgaccactatgatcaatgaagaagctgaaatatctgaagtaactgaggttgtcaagcaa 120 |||||||| ||||||||||| || |||| |||||||||||| | ||| ||||||||| Sbjct: 778 ctgaccaccatgatcaatgatgaggctgcaatatctgaagtgatcgagactgtcaagcag 719 Query: 121 caggttaaagatgctaaatttcctgatatagaggttgttcgcatgctgtgggatgtgctt 180 || ||||| |||||||||||||||||| |||||||| |||||||| ||||||||||||| Sbjct: 718 caagttaaggatgctaaatttcctgatttagaggttattcgcatgttgtgggatgtgctc 659 Query: 181 atggaggctgttcagtggtctggaaagaatcagcagcaaaattctaattcagcacttcgg 240 ||||||||||||||||||||||| ||||| ||||| |||||||||||| ||||||||||| Sbjct: 658 atggaggctgttcagtggtctgggaagaaccagcaacaaaattctaatgcagcacttcgg 599 Query: 241 caggtgaatgcttgggctggtcttatgaatgcattttgcacaagtggaaagctagaactg 300 |||||||| |||||||||| ||| ||||||| |||||||| ||||| | || |||||| Sbjct: 598 caggtgaaagcttgggctgagcttttgaatgctttttgcacgagtggcagacttgaactg 539 Query: 301 gaactcatatacaaggtccagacacagtgttatgaggacgctaagttgatgaagctgttc 360 ||||| |||||||| || ||||| ||||| |||||||| |||||| ||||||||||||| Sbjct: 538 gaacttatatacaaagttcagacgcagtgctatgaggatgctaagctgatgaagctgttt 479 Query: 361 cctgaaattataagatctctgtatgatcaagatgtcctcgctgaagataccatacttctt 420 |||||||| |||||| | |||||||| ||||||||||| ||||||||||| | || ||| Sbjct: 478 cctgaaatcataagaacactgtatgaccaagatgtcctagctgaagatactgtcctcctt 419 Query: 421 tggttccg 428 |||||||| Sbjct: 418 tggttccg 411
>dbj|AK059141.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-A05, full insert sequence Length = 613 Score = 408 bits (206), Expect = e-111 Identities = 308/342 (90%) Strand = Plus / Plus Query: 90 aatatctgaagtaactgaggttgtcaagcaacaggttaaagatgctaaatttcctgatat 149 |||||||||||| || || | ||||||||||||||| ||||||||||||||||||||||| Sbjct: 1 aatatctgaagtcacagaagctgtcaagcaacaggtgaaagatgctaaatttcctgatat 60 Query: 150 agaggttgttcgcatgctgtgggatgtgcttatggaggctgttcagtggtctggaaagaa 209 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 61 agaggttgttcgcatgctatgggatgtgctgatggaggctgttcagtggtctgggaagaa 120 Query: 210 tcagcagcaaaattctaattcagcacttcggcaggtgaatgcttgggctggtcttatgaa 269 ||||| |||||||||||||||||||||||||||||||| || |||||||| ||| |||| Sbjct: 121 ccagcaacaaaattctaattcagcacttcggcaggtgaaagcatgggctggccttttgaa 180 Query: 270 tgcattttgcacaagtggaaagctagaactggaactcatatacaaggtccagacacagtg 329 |||||| ||||||||||| | ||| ||||| |||||||||||||| || ||||||||||| Sbjct: 181 tgcattctgcacaagtggcaggcttgaactcgaactcatatacaaagttcagacacagtg 240 Query: 330 ttatgaggacgctaagttgatgaagctgttccctgaaattataagatctctgtatgatca 389 |||||||| |||||| |||||||||| || |||||||| || ||| | |||||||| || Sbjct: 241 ctatgaggatgctaagctgatgaagctatttcctgaaataatcagaacgctgtatgacca 300 Query: 390 agatgtcctcgctgaagataccatacttctttggttccgcaa 431 ||||||||| |||||||||||||| || |||||||||||||| Sbjct: 301 agatgtcctagctgaagataccatcctcctttggttccgcaa 342
>gb|AY103565.1| Zea mays PCO067369 mRNA sequence Length = 1771 Score = 396 bits (200), Expect = e-107 Identities = 371/428 (86%) Strand = Plus / Plus Query: 1 cttgttgactacaatgtcaagaaaatgtttgaagttaagctcaaggagataaagtcaact 60 |||||||| ||||||| ||||| |||||||||||||| || || |||||||||||||| Sbjct: 867 cttgttgagtacaatgaaaagaagatgtttgaagttaaacttaaagagataaagtcaaca 926 Query: 61 ctgaccactatgatcaatgaagaagctgaaatatctgaagtaactgaggttgtcaagcaa 120 |||||||||||||||||||| || |||| |||| ||||||| | |||| |||||| || Sbjct: 927 ctgaccactatgatcaatgatgaggctgcaatacctgaagtgattgagactgtcaaacag 986 Query: 121 caggttaaagatgctaaatttcctgatatagaggttgttcgcatgctgtgggatgtgctt 180 || ||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||| Sbjct: 987 caagttaaggatgctaaatttcctgatctagaggtcattcgcatgttgtgggatgtgctc 1046 Query: 181 atggaggctgttcagtggtctggaaagaatcagcagcaaaattctaattcagcacttcgg 240 ||||||||||||||||||||||| ||||| ||||| || ||||||||| ||||||||||| Sbjct: 1047 atggaggctgttcagtggtctgggaagaaccagcaacagaattctaatgcagcacttcgg 1106 Query: 241 caggtgaatgcttgggctggtcttatgaatgcattttgcacaagtggaaagctagaactg 300 |||||||| || ||||||| ||| ||||||| |||||||| ||||| | || |||||| Sbjct: 1107 caggtgaaagcatgggctgagcttttgaatgctttttgcacgagtggcagactcgaactg 1166 Query: 301 gaactcatatacaaggtccagacacagtgttatgaggacgctaagttgatgaagctgttc 360 ||||| |||||||| || ||||||||||| |||||||| |||||| ||||||||||||| Sbjct: 1167 gaacttatatacaaagtacagacacagtgctatgaggatgctaagctgatgaagctgttt 1226 Query: 361 cctgaaattataagatctctgtatgatcaagatgtcctcgctgaagataccatacttctt 420 |||||||| |||||| | |||||||| ||||||||||| ||||||||||| | || ||| Sbjct: 1227 cctgaaatcataagaacactgtatgaccaagatgtcctagctgaagatactgtcctgctt 1286 Query: 421 tggttccg 428 |||||||| Sbjct: 1287 tggttccg 1294
>gb|AC148235.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0036H01, complete sequence Length = 182504 Score = 311 bits (157), Expect = 1e-81 Identities = 223/245 (91%) Strand = Plus / Plus Query: 1 cttgttgactacaatgtcaagaaaatgtttgaagttaagctcaaggagataaagtcaact 60 |||||||| ||||||| ||||| |||||||| ||||| || ||||||||||||| ||| Sbjct: 90628 cttgttgagtacaatgaaaagaagatgtttgaggttaaacttaaggagataaagttaaca 90687 Query: 61 ctgaccactatgatcaatgaagaagctgaaatatctgaagtaactgaggttgtcaagcaa 120 ||||| || |||||||||||||| ||||||||||||||||| || || | |||||||||| Sbjct: 90688 ctgacaacaatgatcaatgaagaggctgaaatatctgaagtcacagaagctgtcaagcaa 90747 Query: 121 caggttaaagatgctaaatttcctgatatagaggttgttcgcatgctgtgggatgtgctt 180 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 90748 caggtgaaagatgctaaatttcctgatatagaggttgttcgcatgctatgggatgtgctg 90807 Query: 181 atggaggctgttcagtggtctggaaagaatcagcagcaaaattctaattcagcacttcgg 240 ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 90808 atggaggctgttcagtggtctgggaagaaccagcaacaaaattctaattcagcacttcgg 90867 Query: 241 caggt 245 ||||| Sbjct: 90868 caggt 90872 Score = 188 bits (95), Expect = 1e-44 Identities = 167/191 (87%) Strand = Plus / Plus Query: 241 caggtgaatgcttgggctggtcttatgaatgcattttgcacaagtggaaagctagaactg 300 |||||||| || |||||||| ||| |||||||||| ||||||||||| | ||| ||||| Sbjct: 92953 caggtgaaagcatgggctggccttttgaatgcattctgcacaagtggcaggcttgaactc 93012 Query: 301 gaactcatatacaaggtccagacacagtgttatgaggacgctaagttgatgaagctgttc 360 |||||||||||||| || ||||||||||| |||||||| |||||| |||||||||| || Sbjct: 93013 gaactcatatacaaagttcagacacagtgctatgaggatgctaagctgatgaagctattt 93072 Query: 361 cctgaaattataagatctctgtatgatcaagatgtcctcgctgaagataccatacttctt 420 |||||||| || ||| | |||||||| ||||||||||| |||||||||||||| || ||| Sbjct: 93073 cctgaaataatcagaacgctgtatgaccaagatgtcctagctgaagataccatcctcctt 93132 Query: 421 tggttccgcaa 431 ||||||||||| Sbjct: 93133 tggttccgcaa 93143
>gb|AC148658.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0018P20 map near S6115, complete sequence Length = 139249 Score = 311 bits (157), Expect = 1e-81 Identities = 223/245 (91%) Strand = Plus / Minus Query: 1 cttgttgactacaatgtcaagaaaatgtttgaagttaagctcaaggagataaagtcaact 60 |||||||| ||||||| ||||| |||||||| ||||| || ||||||||||||| ||| Sbjct: 138070 cttgttgagtacaatgaaaagaagatgtttgaggttaaacttaaggagataaagttaaca 138011 Query: 61 ctgaccactatgatcaatgaagaagctgaaatatctgaagtaactgaggttgtcaagcaa 120 ||||| || |||||||||||||| ||||||||||||||||| || || | |||||||||| Sbjct: 138010 ctgacaacaatgatcaatgaagaggctgaaatatctgaagtcacagaagctgtcaagcaa 137951 Query: 121 caggttaaagatgctaaatttcctgatatagaggttgttcgcatgctgtgggatgtgctt 180 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 137950 caggtgaaagatgctaaatttcctgatatagaggttgttcgcatgctatgggatgtgctg 137891 Query: 181 atggaggctgttcagtggtctggaaagaatcagcagcaaaattctaattcagcacttcgg 240 ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 137890 atggaggctgttcagtggtctgggaagaaccagcaacaaaattctaattcagcacttcgg 137831 Query: 241 caggt 245 ||||| Sbjct: 137830 caggt 137826 Score = 188 bits (95), Expect = 1e-44 Identities = 167/191 (87%) Strand = Plus / Minus Query: 241 caggtgaatgcttgggctggtcttatgaatgcattttgcacaagtggaaagctagaactg 300 |||||||| || |||||||| ||| |||||||||| ||||||||||| | ||| ||||| Sbjct: 135745 caggtgaaagcatgggctggccttttgaatgcattctgcacaagtggcaggcttgaactc 135686 Query: 301 gaactcatatacaaggtccagacacagtgttatgaggacgctaagttgatgaagctgttc 360 |||||||||||||| || ||||||||||| |||||||| |||||| |||||||||| || Sbjct: 135685 gaactcatatacaaagttcagacacagtgctatgaggatgctaagctgatgaagctattt 135626 Query: 361 cctgaaattataagatctctgtatgatcaagatgtcctcgctgaagataccatacttctt 420 |||||||| || ||| | |||||||| ||||||||||| |||||||||||||| || ||| Sbjct: 135625 cctgaaataatcagaacgctgtatgaccaagatgtcctagctgaagataccatcctcctt 135566 Query: 421 tggttccgcaa 431 ||||||||||| Sbjct: 135565 tggttccgcaa 135555
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 311 bits (157), Expect = 1e-81 Identities = 223/245 (91%) Strand = Plus / Minus Query: 1 cttgttgactacaatgtcaagaaaatgtttgaagttaagctcaaggagataaagtcaact 60 |||||||| ||||||| ||||| |||||||| ||||| || ||||||||||||| ||| Sbjct: 12077444 cttgttgagtacaatgaaaagaagatgtttgaggttaaacttaaggagataaagttaaca 12077385 Query: 61 ctgaccactatgatcaatgaagaagctgaaatatctgaagtaactgaggttgtcaagcaa 120 ||||| || |||||||||||||| ||||||||||||||||| || || | |||||||||| Sbjct: 12077384 ctgacaacaatgatcaatgaagaggctgaaatatctgaagtcacagaagctgtcaagcaa 12077325 Query: 121 caggttaaagatgctaaatttcctgatatagaggttgttcgcatgctgtgggatgtgctt 180 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 12077324 caggtgaaagatgctaaatttcctgatatagaggttgttcgcatgctatgggatgtgctg 12077265 Query: 181 atggaggctgttcagtggtctggaaagaatcagcagcaaaattctaattcagcacttcgg 240 ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 12077264 atggaggctgttcagtggtctgggaagaaccagcaacaaaattctaattcagcacttcgg 12077205 Query: 241 caggt 245 ||||| Sbjct: 12077204 caggt 12077200 Score = 188 bits (95), Expect = 1e-44 Identities = 167/191 (87%) Strand = Plus / Minus Query: 241 caggtgaatgcttgggctggtcttatgaatgcattttgcacaagtggaaagctagaactg 300 |||||||| || |||||||| ||| |||||||||| ||||||||||| | ||| ||||| Sbjct: 12075119 caggtgaaagcatgggctggccttttgaatgcattctgcacaagtggcaggcttgaactc 12075060 Query: 301 gaactcatatacaaggtccagacacagtgttatgaggacgctaagttgatgaagctgttc 360 |||||||||||||| || ||||||||||| |||||||| |||||| |||||||||| || Sbjct: 12075059 gaactcatatacaaagttcagacacagtgctatgaggatgctaagctgatgaagctattt 12075000 Query: 361 cctgaaattataagatctctgtatgatcaagatgtcctcgctgaagataccatacttctt 420 |||||||| || ||| | |||||||| ||||||||||| |||||||||||||| || ||| Sbjct: 12074999 cctgaaataatcagaacgctgtatgaccaagatgtcctagctgaagataccatcctcctt 12074940 Query: 421 tggttccgcaa 431 ||||||||||| Sbjct: 12074939 tggttccgcaa 12074929
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 311 bits (157), Expect = 1e-81 Identities = 223/245 (91%) Strand = Plus / Minus Query: 1 cttgttgactacaatgtcaagaaaatgtttgaagttaagctcaaggagataaagtcaact 60 |||||||| ||||||| ||||| |||||||| ||||| || ||||||||||||| ||| Sbjct: 12156751 cttgttgagtacaatgaaaagaagatgtttgaggttaaacttaaggagataaagttaaca 12156692 Query: 61 ctgaccactatgatcaatgaagaagctgaaatatctgaagtaactgaggttgtcaagcaa 120 ||||| || |||||||||||||| ||||||||||||||||| || || | |||||||||| Sbjct: 12156691 ctgacaacaatgatcaatgaagaggctgaaatatctgaagtcacagaagctgtcaagcaa 12156632 Query: 121 caggttaaagatgctaaatttcctgatatagaggttgttcgcatgctgtgggatgtgctt 180 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 12156631 caggtgaaagatgctaaatttcctgatatagaggttgttcgcatgctatgggatgtgctg 12156572 Query: 181 atggaggctgttcagtggtctggaaagaatcagcagcaaaattctaattcagcacttcgg 240 ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 12156571 atggaggctgttcagtggtctgggaagaaccagcaacaaaattctaattcagcacttcgg 12156512 Query: 241 caggt 245 ||||| Sbjct: 12156511 caggt 12156507 Score = 188 bits (95), Expect = 1e-44 Identities = 167/191 (87%) Strand = Plus / Minus Query: 241 caggtgaatgcttgggctggtcttatgaatgcattttgcacaagtggaaagctagaactg 300 |||||||| || |||||||| ||| |||||||||| ||||||||||| | ||| ||||| Sbjct: 12154426 caggtgaaagcatgggctggccttttgaatgcattctgcacaagtggcaggcttgaactc 12154367 Query: 301 gaactcatatacaaggtccagacacagtgttatgaggacgctaagttgatgaagctgttc 360 |||||||||||||| || ||||||||||| |||||||| |||||| |||||||||| || Sbjct: 12154366 gaactcatatacaaagttcagacacagtgctatgaggatgctaagctgatgaagctattt 12154307 Query: 361 cctgaaattataagatctctgtatgatcaagatgtcctcgctgaagataccatacttctt 420 |||||||| || ||| | |||||||| ||||||||||| |||||||||||||| || ||| Sbjct: 12154306 cctgaaataatcagaacgctgtatgaccaagatgtcctagctgaagataccatcctcctt 12154247 Query: 421 tggttccgcaa 431 ||||||||||| Sbjct: 12154246 tggttccgcaa 12154236
>gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete sequence Length = 158384 Score = 111 bits (56), Expect = 2e-21 Identities = 128/152 (84%) Strand = Plus / Minus Query: 277 tgcacaagtggaaagctagaactggaactcatatacaaggtccagacacagtgttatgag 336 ||||| |||||||| || || ||||| || || ||||| || |||| || || |||||| Sbjct: 55185 tgcaccagtggaaaacttgagctggagctgatgtacaaagtacagatgcaatgctatgag 55126 Query: 337 gacgctaagttgatgaagctgttccctgaaattataagatctctgtatgatcaagatgtc 396 || |||||| ||||||||||||||||||| ||||| |||||||| ||||| || ||||| Sbjct: 55125 gatgctaagctgatgaagctgttccctgagattattagatctctttatgaacaggatgtg 55066 Query: 397 ctcgctgaagataccatacttctttggttccg 428 || |||||||||||||| |||| ||||||||| Sbjct: 55065 ctggctgaagataccattcttcattggttccg 55034
>ref|NM_123014.2| Arabidopsis thaliana translation initiation factor AT5G36230 mRNA, complete cds Length = 1600 Score = 63.9 bits (32), Expect = 4e-07 Identities = 89/108 (82%) Strand = Plus / Plus Query: 115 aagcaacaggttaaagatgctaaatttcctgatatagaggttgttcgcatgctgtgggat 174 ||||||||| | ||||||||||| || ||||| || |||||||| || | | |||||| Sbjct: 967 aagcaacagatcaaagatgctaagttacctgacattgaggttgtgcgtgttgtttgggat 1026 Query: 175 gtgcttatggaggctgttcagtggtctggaaagaatcagcagcaaaat 222 | | ||||| |||||||||||||||||||| || |||||||||||| Sbjct: 1027 ggtttaatggatgctgttcagtggtctggaaaaaaccagcagcaaaat 1074
>gb|AY136473.1| Arabidopsis thaliana putative protein (At5g36230) mRNA, complete cds Length = 1594 Score = 63.9 bits (32), Expect = 4e-07 Identities = 89/108 (82%) Strand = Plus / Plus Query: 115 aagcaacaggttaaagatgctaaatttcctgatatagaggttgttcgcatgctgtgggat 174 ||||||||| | ||||||||||| || ||||| || |||||||| || | | |||||| Sbjct: 963 aagcaacagatcaaagatgctaagttacctgacattgaggttgtgcgtgttgtttgggat 1022 Query: 175 gtgcttatggaggctgttcagtggtctggaaagaatcagcagcaaaat 222 | | ||||| |||||||||||||||||||| || |||||||||||| Sbjct: 1023 ggtttaatggatgctgttcagtggtctggaaaaaaccagcagcaaaat 1070
>gb|AY057642.1| Arabidopsis thaliana AT5g36230/T30G6_9 mRNA, complete cds Length = 1611 Score = 63.9 bits (32), Expect = 4e-07 Identities = 89/108 (82%) Strand = Plus / Plus Query: 115 aagcaacaggttaaagatgctaaatttcctgatatagaggttgttcgcatgctgtgggat 174 ||||||||| | ||||||||||| || ||||| || |||||||| || | | |||||| Sbjct: 966 aagcaacagatcaaagatgctaagttacctgacattgaggttgtgcgtgttgtttgggat 1025 Query: 175 gtgcttatggaggctgttcagtggtctggaaagaatcagcagcaaaat 222 | | ||||| |||||||||||||||||||| || |||||||||||| Sbjct: 1026 ggtttaatggatgctgttcagtggtctggaaaaaaccagcagcaaaat 1073
>dbj|AB026661.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:T30G6 Length = 76994 Score = 63.9 bits (32), Expect = 4e-07 Identities = 89/108 (82%) Strand = Plus / Plus Query: 115 aagcaacaggttaaagatgctaaatttcctgatatagaggttgttcgcatgctgtgggat 174 ||||||||| | ||||||||||| || ||||| || |||||||| || | | |||||| Sbjct: 30636 aagcaacagatcaaagatgctaagttacctgacattgaggttgtgcgtgttgtttgggat 30695 Query: 175 gtgcttatggaggctgttcagtggtctggaaagaatcagcagcaaaat 222 | | ||||| |||||||||||||||||||| || |||||||||||| Sbjct: 30696 ggtttaatggatgctgttcagtggtctggaaaaaaccagcagcaaaat 30743
>emb|AL161916.8| Human DNA sequence from clone RP4-636O23 on chromosome 1p31.3-32.2 Contains the 3' end of gene MGC35130, complete sequence Length = 99249 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 217 caaaattctaattcagcacttc 238 |||||||||||||||||||||| Sbjct: 70039 caaaattctaattcagcacttc 70060
>gb|M95288.1|SYOPHYCO Synechococcus sp. phycoerythrin II (beta, alpha, and gamma subunits); phycoerythrin I (alpha and beta subunits); R-phycocyanin II (beta and alpha subunits), complete cds's; phosphotyrosine protein phosphatase, 5' end Length = 14891 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 aaatgtttgaagttaagctcaa 44 |||||||||||||||||||||| Sbjct: 2123 aaatgtttgaagttaagctcaa 2102
>gb|AC005997.3| Homo sapiens PAC clone RP4-558L10 from 7, complete sequence Length = 143250 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 cctgaaattataagatctctg 381 ||||||||||||||||||||| Sbjct: 35653 cctgaaattataagatctctg 35633
>gb|AC142349.1| Pan troglodytes BAC clone RP43-9F6 from 7, complete sequence Length = 192143 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 cctgaaattataagatctctg 381 ||||||||||||||||||||| Sbjct: 130237 cctgaaattataagatctctg 130217
>gb|AC108101.2| Homo sapiens chromosome 5 clone RP11-125H10, complete sequence Length = 144841 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 atgtcaagaaaatgtttgaag 34 ||||||||||||||||||||| Sbjct: 132058 atgtcaagaaaatgtttgaag 132078
>gb|AC025173.5|AC025173 Homo sapiens chromosome 5 clone CTD-2036C20, complete sequence Length = 140935 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 atgtcaagaaaatgtttgaag 34 ||||||||||||||||||||| Sbjct: 25113 atgtcaagaaaatgtttgaag 25133
>gb|AC134470.5| Mus musculus BAC clone RP23-120K22 from chromosome 14, complete sequence Length = 211779 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 74 tcaatgaagaagctgaaatatctgaagt 101 ||||| ||||||||||||||||| |||| Sbjct: 36358 tcaataaagaagctgaaatatctaaagt 36331
>ref|XM_461307.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F23573g) partial mRNA Length = 3612 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 80 aagaagctgaaatatctgaagtaactga 107 |||||||||||||| |||||| |||||| Sbjct: 3068 aagaagctgaaatagctgaaggaactga 3095
>ref|XM_461779.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G06017g) partial mRNA Length = 747 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 acaagtggaaagctagaactggaa 303 |||||| ||||||||||||||||| Sbjct: 707 acaagtcgaaagctagaactggaa 730
>gb|AC100590.9| Mus musculus chromosome 10, clone RP23-156N5, complete sequence Length = 195389 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ttaagctcaaggagataaag 54 |||||||||||||||||||| Sbjct: 1311 ttaagctcaaggagataaag 1292
>emb|BX000531.11| Human DNA sequence from clone DAQB-12N14 on chromosome 6 Contains the OR2H1 gene for olfactory receptor, family 2, subfamily H, member 1, the UBDP1 pseudogene for ubiquitin D pseudogene 1, the MAS1L gene for MAS1 oncogene-like, the RPS17P1 pseudogene for ribosomal protein S17 pseudogene 1 and the DAQB-12N14.5 gene for a novel transcript, complete sequence Length = 89139 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ttgactacaatgtcaagaaa 24 |||||||||||||||||||| Sbjct: 11717 ttgactacaatgtcaagaaa 11698
>emb|BX247947.4| Human DNA sequence from clone DASS-372E1 on chromosome 6, complete sequence Length = 112061 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ttgactacaatgtcaagaaa 24 |||||||||||||||||||| Sbjct: 15504 ttgactacaatgtcaagaaa 15485
>emb|AL645927.3| Human DNA sequence from clone XXbac-13B8 on chromosome 6 contains the OR12D2, OR11A1, OR10C1 and OR2H1 genes for olfactory receptor, family 12, subfamily D, member 2, family 11, subfamily A, member 1, family 10, subfamily C, member 1 and family 2, subfamily H, member 1, the OR12D1P pseudogene for olfactory receptor, family12, subfamily D, member 1, a diubiquitin pseudogene, the MRG gene for MAS-related G protein-coupled receptor MRG and a ribosomal protein S17 (RPS17) pseudogene, complete sequence Length = 112578 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ttgactacaatgtcaagaaa 24 |||||||||||||||||||| Sbjct: 66187 ttgactacaatgtcaagaaa 66168
>emb|AL662869.2| Human DNA sequence from clone XXbac-128A13 on chromosome 6 contains the OR12D2, OR11A1, OR10C1 and OR2H1 genes for olfactory receptor, family 12, subfamily D, member 2, family 11, subfamily A, member 1, family 10, subfamily C, member 1, family 2, subfamily H, member 1, the gene for MAS-related G protein-coupled receptor (MRG), the OR12D1P pseudogene for olfactory receptor, family 12, subfamily D, member 1, a diubiquitin pseudogene and a ribosomal protein S17 (RPS17) pseudogene, complete sequence Length = 133836 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ttgactacaatgtcaagaaa 24 |||||||||||||||||||| Sbjct: 62855 ttgactacaatgtcaagaaa 62836
>emb|AL022165.1|HS71L16 Human DNA sequence from clone RP1-71L16 on chromosome Xp11 Contains a pseudogene similar to part of novel gene (FLJ20344), a novel gene, the CHST7 gene for carbohydrate (N-acetylglucosamine 6-O) ulfotransferase 7 (C6ST-2), the 3' end of the SLC9A7 gene for solute carrier family 9 (sodium/hydrogen exchanger), isoform 7 (NHE7), a pseudogene similar to part of germ cell specific Y-box binding protein (YBX2) and two CpG islands, complete sequence Length = 176433 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 253 tgggctggtcttatgaatgcattt 276 ||||||||||||| |||||||||| Sbjct: 112109 tgggctggtcttaggaatgcattt 112132
>ref|XM_793159.1| PREDICTED: Strongylocentrotus purpuratus similar to sterile alpha motif domain containing 9 (LOC593689), partial mRNA Length = 4002 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 aactgaggttgtcaagcaac 121 |||||||||||||||||||| Sbjct: 2100 aactgaggttgtcaagcaac 2119
>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces hansenii Length = 2336804 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 80 aagaagctgaaatatctgaagtaactga 107 |||||||||||||| |||||| |||||| Sbjct: 1874015 aagaagctgaaatagctgaaggaactga 1874042
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii Length = 2051428 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 280 acaagtggaaagctagaactggaa 303 |||||| ||||||||||||||||| Sbjct: 463933 acaagtcgaaagctagaactggaa 463910
>emb|CR388393.8| Human DNA sequence from clone DADB-136A24 on chromosome 6, complete sequence Length = 159366 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ttgactacaatgtcaagaaa 24 |||||||||||||||||||| Sbjct: 87660 ttgactacaatgtcaagaaa 87641
>gb|AC152395.9| Mus musculus chromosome 15, clone RP23-391D2, complete sequence Length = 210006 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 ttatgaatgcattttgcaca 282 |||||||||||||||||||| Sbjct: 59097 ttatgaatgcattttgcaca 59116
>emb|CR759768.2| Human DNA sequence from clone DAMC-143I21 on chromosome 6, complete sequence Length = 123752 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ttgactacaatgtcaagaaa 24 |||||||||||||||||||| Sbjct: 42303 ttgactacaatgtcaagaaa 42284
>emb|CR759956.2| Human DNA sequence from clone DAAP-341G9 on chromosome 6, complete sequence Length = 81080 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ttgactacaatgtcaagaaa 24 |||||||||||||||||||| Sbjct: 8706 ttgactacaatgtcaagaaa 8687
>gb|AC096757.3| Homo sapiens BAC clone RP11-543H9 from 4, complete sequence Length = 188464 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 203 gaaagaatcagcagcaaaattcta 226 |||||||||||||||| ||||||| Sbjct: 32188 gaaagaatcagcagcagaattcta 32165
>gb|AC026241.7| Homo sapiens, clone RP11-698O20, complete sequence Length = 196145 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 aggttgtcaagcaacaggtt 126 |||||||||||||||||||| Sbjct: 66524 aggttgtcaagcaacaggtt 66543
>gb|AC154253.2| Mus musculus BAC clone RP24-201F24 from chromosome 14, complete sequence Length = 161496 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 74 tcaatgaagaagctgaaatatctgaagt 101 ||||| ||||||||||||||||| |||| Sbjct: 61927 tcaataaagaagctgaaatatctaaagt 61900
>emb|BX927133.5| Human DNA sequence from clone DAMA-61E19 on chromosome 6, complete sequence Length = 107459 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ttgactacaatgtcaagaaa 24 |||||||||||||||||||| Sbjct: 56345 ttgactacaatgtcaagaaa 56326
>gb|AC013473.8| Homo sapiens BAC clone RP11-504G5 from 2, complete sequence Length = 170781 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 77 atgaagaagctgaaatatctgaagtaac 104 |||||||| || |||||||||||||||| Sbjct: 86519 atgaagaaccttaaatatctgaagtaac 86492
>gb|AC004178.1|AC004178 Homo sapiens clone UWGC:y19x006 from 6p21, complete sequence Length = 36384 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ttgactacaatgtcaagaaa 24 |||||||||||||||||||| Sbjct: 23879 ttgactacaatgtcaagaaa 23898
>emb|AL035542.8|HS994E9 Human DNA sequence from clone RP5-994E9 on chromosome 6p21.31-22.2 Contains the OR12D2, OR11A1, OR10C1 and OR2H1 genes for olfactory receptors 12D2, 11A1, 10C1 and 2H1, olfactory receptor 12D1 pseudogene OR12D1P, a diubiquitin pseudogene, the MAS-related G protein-coupled receptor MRG gene, an RPS17 (40S ribosomal protein S17) pseudogene and GSSs, complete sequence Length = 114868 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ttgactacaatgtcaagaaa 24 |||||||||||||||||||| Sbjct: 68071 ttgactacaatgtcaagaaa 68052
>gb|DQ304649.1| Homo sapiens anaphase promoting complex subunit 10 (ANAPC10) gene, complete cds Length = 106979 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 gaaagaatcagcagcaaaattcta 226 |||||||||||||||| ||||||| Sbjct: 34905 gaaagaatcagcagcagaattcta 34928
>gb|AC164172.10| Mus musculus 10 BAC RP23-392K16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 184194 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ttaagctcaaggagataaag 54 |||||||||||||||||||| Sbjct: 160946 ttaagctcaaggagataaag 160927 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,376,394 Number of Sequences: 3902068 Number of extensions: 4376394 Number of successful extensions: 84270 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84107 Number of HSP's gapped (non-prelim): 163 length of query: 431 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 409 effective length of database: 17,147,199,772 effective search space: 7013204706748 effective search space used: 7013204706748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)