ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet65b03 |
|---|---|
| Clone Library Name | barley_pub |
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 65.9 bits (159), Expect = 5e-11 Identities = 31/43 (72%), Positives = 38/43 (88%) Frame = +1 Query: 331 GDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 G G++ EPPEEAK++VGNLPYDVDSE+LA +FD AGVVE+AE Sbjct: 44 GGQGFS-EPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAE 85 Score = 39.3 bits (90), Expect = 0.005 Identities = 17/26 (65%), Positives = 21/26 (80%) Frame = +1 Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVV 447 +VYVGNLP+DVD+ RL QLF + G V Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKV 175
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 65.1 bits (157), Expect = 8e-11 Identities = 29/36 (80%), Positives = 35/36 (97%) Frame = +1 Query: 352 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 EPPE+AK++VGNLPYDVDSE LA+LF+QAGVVE+AE Sbjct: 131 EPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAE 166 Score = 34.3 bits (77), Expect = 0.16 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = +1 Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVV 447 ++YVGN+P+ +D RL QLF + G V Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKV 256
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 64.7 bits (156), Expect = 1e-10 Identities = 32/46 (69%), Positives = 38/46 (82%), Gaps = 3/46 (6%) Frame = +1 Query: 331 GDAGYTAE---PPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 G+AG T E P E+AK++VGNLPYD+DSE LAQLF QAGVVE+AE Sbjct: 82 GEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAE 127 Score = 35.8 bits (81), Expect = 0.054 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = +1 Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVV 447 ++YVGN+P+D+D RL Q+F + G V Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKV 217
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 55.5 bits (132), Expect = 7e-08 Identities = 25/36 (69%), Positives = 31/36 (86%) Frame = +1 Query: 352 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 EP EEAK++VGNL YDV+S+ LA LF+QAG VE+AE Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAE 180 Score = 38.5 bits (88), Expect = 0.008 Identities = 17/26 (65%), Positives = 21/26 (80%) Frame = +1 Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVV 447 +VYVGNLP+DVD+ RL QLF + G V Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKV 270
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 44.3 bits (103), Expect = 2e-04 Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 6/41 (14%) Frame = +1 Query: 355 PPEEA------KVYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 PP+E K++VGNLP++VDS +LAQLF+ AG VE+ E Sbjct: 81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVE 121 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +1 Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVV 447 +VYVGNL + VD L LF + G V Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKV 230
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 43.5 bits (101), Expect = 3e-04 Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 3/40 (7%) Frame = +1 Query: 349 AEPP---EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 AE P E+ K++VGNLP+ VDS LA LF++AG VE+ E Sbjct: 79 AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVE 118 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +1 Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVV 447 +VYVGNL + VD L +LF + G V Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNV 234
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 42.7 bits (99), Expect = 4e-04 Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 3/40 (7%) Frame = +1 Query: 349 AEPP---EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 AE P E+ K++VGNLP+ VDS LA LF++AG VE+ E Sbjct: 78 AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVE 117 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +1 Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVV 447 +VYVGNL + VD L +LF + G V Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNV 233
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 2/45 (4%) Frame = +1 Query: 331 GDAGYTAEP--PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 GD G E + K++VGNLP+ DS LA+LF++AG VE+ E Sbjct: 73 GDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVE 117 Score = 29.6 bits (65), Expect = 3.8 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +1 Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVV 447 +VYVGNL + VD + L LF + G V Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKV 214
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/32 (56%), Positives = 26/32 (81%) Frame = +1 Query: 364 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 + K++VGNL ++VDS +LAQLF+ AG VE+ E Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVE 129
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 38.1 bits (87), Expect = 0.011 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%) Frame = +1 Query: 331 GDAGYTAEP--PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 GD G E + K++VGNL + DS LA+LF++AG VE+ E Sbjct: 73 GDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVE 117 Score = 29.6 bits (65), Expect = 3.8 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +1 Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVV 447 +VYVGNL + VD + L LF + G V Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKV 220
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 35.8 bits (81), Expect = 0.054 Identities = 15/37 (40%), Positives = 25/37 (67%) Frame = +1 Query: 349 AEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 +E E ++YVGNLP+ + S +L+++F +AG V E Sbjct: 108 SESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVE 144
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 35.0 bits (79), Expect = 0.092 Identities = 12/26 (46%), Positives = 21/26 (80%) Frame = +1 Query: 373 VYVGNLPYDVDSERLAQLFDQAGVVE 450 V+VGN+PYDV +++ ++F+Q G V+ Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVK 34
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 33.9 bits (76), Expect = 0.20 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = +1 Query: 364 EAKVYVGNLPYDVDSERLAQLFDQAG 441 +AKVYVG LP D S+ L ++FD+ G Sbjct: 2 DAKVYVGGLPSDATSQELEEIFDRFG 27
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 32.3 bits (72), Expect = 0.59 Identities = 12/45 (26%), Positives = 28/45 (62%) Frame = +1 Query: 325 SGGDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 S A +++ ++YVGN+P +++++ L + ++ G +E+AE Sbjct: 70 SSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAE 114
>DND1_MOUSE (Q6VY05) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 352 Score = 32.0 bits (71), Expect = 0.78 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 355 PPEEAKVYVGNLPYDVDSERLAQLFDQAG 441 PP ++VY+G LP DV +L LF + G Sbjct: 54 PPSGSEVYIGRLPQDVYEHQLIPLFQRVG 82
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 32.0 bits (71), Expect = 0.78 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = +1 Query: 325 SGGDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVV 447 SG +AG PP VY+G++PYD E++ L G V Sbjct: 5 SGVNAGVQNNPPSRV-VYLGSIPYDQTEEQILDLCSNVGPV 44
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 31.6 bits (70), Expect = 1.0 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = +1 Query: 358 PEEAKVYVGNLPYDVDSERLAQLFDQAG-VVEV 453 P+ +++VGNLP+D+D L + F G VVE+ Sbjct: 328 PDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 360
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 31.6 bits (70), Expect = 1.0 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = +1 Query: 358 PEEAKVYVGNLPYDVDSERLAQLFDQAG-VVEV 453 P+ +++VGNLP+D+D L + F G VVE+ Sbjct: 328 PDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 360
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 31.2 bits (69), Expect = 1.3 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = +1 Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 E+ KVYVGNLP DV + + +F + G ++ + Sbjct: 7 EDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVD 39
>KSGA_METCA (Q60B77) Dimethyladenosine transferase (EC 2.1.1.-)| (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) Length = 257 Score = 31.2 bits (69), Expect = 1.3 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = +1 Query: 379 VGNLPYDVDSERLAQLFDQAGVVE 450 VGNLPY++ + L LFDQ V+E Sbjct: 103 VGNLPYNISTPLLFHLFDQIDVIE 126
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 31.2 bits (69), Expect = 1.3 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Frame = +1 Query: 337 AGYTAEPPEEAK----VYVGNLPYDVDSERLAQLFDQAGVV 447 AG T P + V+VGN+PY+ E+L +F + G V Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 31.2 bits (69), Expect = 1.3 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Frame = +1 Query: 337 AGYTAEPPEEAK----VYVGNLPYDVDSERLAQLFDQAGVV 447 AG T P + V+VGN+PY+ E+L +F + G V Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 31.2 bits (69), Expect = 1.3 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Frame = +1 Query: 337 AGYTAEPPEEAK----VYVGNLPYDVDSERLAQLFDQAGVV 447 AG T P + V+VGN+PY+ E+L +F + G V Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 30.4 bits (67), Expect = 2.3 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +1 Query: 373 VYVGNLPYDVDSERLAQLFDQAGVV 447 V+VGN+PY+ E+L +F + G V Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSV 42
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 30.4 bits (67), Expect = 2.3 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = +1 Query: 358 PEEAKVYVGNLPYDVDSERLAQLFDQAG-VVEV 453 P+ ++++GNLP++VD L F G VVE+ Sbjct: 335 PDSHQLFIGNLPHEVDKSELKDFFQNFGNVVEL 367
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 30.4 bits (67), Expect = 2.3 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = +1 Query: 358 PEEAKVYVGNLPYDVDSERLAQLFDQAG-VVEV 453 P+ ++++GNLP++VD L F G VVE+ Sbjct: 337 PDSHQLFIGNLPHEVDKSELKDFFQSYGNVVEL 369
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 30.4 bits (67), Expect = 2.3 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +1 Query: 373 VYVGNLPYDVDSERLAQLFDQAGVV 447 V+VGN+PY+ E+L +F + G V Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSV 42
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 30.4 bits (67), Expect = 2.3 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +1 Query: 373 VYVGNLPYDVDSERLAQLFDQAGVV 447 V+VGN+PY+ E+L +F + G V Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPV 42
>RNP1_CAEEL (Q10667) RNA-binding protein rnp-1| Length = 305 Score = 30.0 bits (66), Expect = 2.9 Identities = 12/21 (57%), Positives = 18/21 (85%) Frame = +1 Query: 367 AKVYVGNLPYDVDSERLAQLF 429 +K++VGNLP +VDS +L Q+F Sbjct: 3 SKLFVGNLPDNVDSNKLKQVF 23
>DND1_HUMAN (Q8IYX4) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 353 Score = 30.0 bits (66), Expect = 2.9 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 355 PPEEAKVYVGNLPYDVDSERLAQLFDQAG 441 PP ++V++G LP DV +L LF + G Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVG 82
>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein| Length = 124 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +1 Query: 346 TAEPPEEAKV-YVGNLPYDVDSERLAQLFDQAGVV 447 T PPE +V YV NLP+++ SE + +F + G + Sbjct: 11 TRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAI 45
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +1 Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVA 456 E+ V+V N+PYD E LA F + G V+ A Sbjct: 288 EDFSVFVRNVPYDATEESLAPHFSKFGSVKYA 319
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 29.6 bits (65), Expect = 3.8 Identities = 10/27 (37%), Positives = 20/27 (74%) Frame = +1 Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAG 441 + ++++VGNLP D+ E + +LF++ G Sbjct: 74 QRSRLFVGNLPPDITEEEMRKLFEKYG 100
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2| Length = 218 Score = 29.6 bits (65), Expect = 3.8 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +1 Query: 367 AKVYVGNLPYDVDSERLAQLFDQAGVVE 450 A +YVGNL + E+L +LF + G +E Sbjct: 46 ATIYVGNLSFYTSEEQLYELFSKCGSIE 73
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 29.6 bits (65), Expect = 3.8 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = +1 Query: 370 KVYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 K++VG + D + + L + F+Q G +EV E Sbjct: 106 KIFVGGIKEDTEEDHLREYFEQYGKIEVIE 135
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 29.6 bits (65), Expect = 3.8 Identities = 10/27 (37%), Positives = 20/27 (74%) Frame = +1 Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAG 441 + ++++VGNLP D+ E + +LF++ G Sbjct: 77 QRSRLFVGNLPPDITEEEMRKLFEKYG 103
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 29.6 bits (65), Expect = 3.8 Identities = 10/27 (37%), Positives = 20/27 (74%) Frame = +1 Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAG 441 + ++++VGNLP D+ E + +LF++ G Sbjct: 72 QRSRLFVGNLPPDITEEEMRKLFEKYG 98
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 29.6 bits (65), Expect = 3.8 Identities = 10/27 (37%), Positives = 20/27 (74%) Frame = +1 Query: 361 EEAKVYVGNLPYDVDSERLAQLFDQAG 441 + ++++VGNLP D+ E + +LF++ G Sbjct: 72 QRSRLFVGNLPPDITEEEMRKLFEKYG 98
>KSGA_PSEPK (Q88QT6) Dimethyladenosine transferase (EC 2.1.1.-)| (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) Length = 267 Score = 29.3 bits (64), Expect = 5.0 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 355 PPEEAKVYVGNLPYDVDSERLAQLFDQAGVV 447 PP KV VGNLPY++ + + L AG++ Sbjct: 101 PPRSLKV-VGNLPYNISTPLIFHLLSHAGLI 130
>CPB1_CAEEL (Q03571) Cytoplasmic polyadenylation element-binding protein 1| Length = 372 Score = 29.3 bits (64), Expect = 5.0 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +1 Query: 346 TAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVV 447 +AEP KV++G LP DV E++ F G V Sbjct: 51 SAEPLYSRKVFIGGLPIDVSEEQVWATFGAFGKV 84
>CASC3_HUMAN (O15234) Protein CASC3 (Cancer susceptibility candidate gene 3| protein) (Metastatic lymph node protein 51) (MLN 51 protein) (Barentsz protein) (Btz) Length = 703 Score = 29.3 bits (64), Expect = 5.0 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 7/60 (11%) Frame = +3 Query: 15 SPARLPPL-------IPFSHHGHLRHDTRHVCGNGGLALPPRVRRPTQARPGVRLPPTHF 173 SPA LPP + H G H T N GL PP P Q P L PT+F Sbjct: 563 SPAPLPPQGMLVQPGMNLPHPGLHPHQTPAPLPNPGLYPPPVSMSPGQPPPQQLLAPTYF 622
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1 Query: 364 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 + ++YVGNLP DV + L LF + G + E Sbjct: 14 DGRIYVGNLPSDVREKDLEDLFYKYGRIREIE 45
>KSGA_XYLFA (Q9PBJ6) Dimethyladenosine transferase (EC 2.1.1.-)| (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) Length = 265 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +1 Query: 334 DAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVV 447 D A+P + VGNLPY++ S L + QA ++ Sbjct: 95 DLSILAKPGNKKLRLVGNLPYNISSPILFHVLQQAAII 132
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 28.9 bits (63), Expect = 6.6 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +1 Query: 334 DAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVV 447 D+ Y+ + P +++VG +P D+ + L LF++AG + Sbjct: 150 DSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPI 188
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 28.9 bits (63), Expect = 6.6 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +1 Query: 334 DAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVV 447 D+ Y+ + P +++VG +P D+ + L LF++AG + Sbjct: 150 DSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPI 188
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1 Query: 364 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 + ++YVGNLP DV + L LF + G + E Sbjct: 13 DGRIYVGNLPTDVREKDLEDLFYKYGRIREIE 44
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1 Query: 364 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 + ++YVGNLP DV + L LF + G + E Sbjct: 13 DGRIYVGNLPTDVREKDLEDLFYKYGRIREIE 44
>PHP_DROME (P39769) Polyhomeotic-proximal chromatin protein| Length = 1589 Score = 28.9 bits (63), Expect = 6.6 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -3 Query: 449 STTPAWSKSWASRSLSTSYGRFPTYTLASSGGSAVYPASP 330 ST P + S S ++++S G+ + ASSGG PA+P Sbjct: 1088 STAPPVTVSVTSTAVTSSPGQLVLLSTASSGGGGSIPATP 1127
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 28.9 bits (63), Expect = 6.6 Identities = 17/37 (45%), Positives = 21/37 (56%) Frame = +1 Query: 337 AGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVV 447 AG +E ++A VYVG L V L +LF QAG V Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPV 39
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 28.9 bits (63), Expect = 6.6 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +1 Query: 334 DAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVV 447 D+ Y+ + P +++VG +P D+ + L LF++AG + Sbjct: 60 DSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPI 98
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +1 Query: 373 VYVGNLPYDVDSERLAQLFDQAGVVEVAE 459 ++VGNL YD E L + F Q G V A+ Sbjct: 138 IFVGNLTYDSTPEDLTEFFSQIGKVVRAD 166
>DMDB_DROME (Q9VDW3) Dystrophin, isoform B| Length = 1669 Score = 28.5 bits (62), Expect = 8.6 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +1 Query: 340 GYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEV 453 G + +PP E N+PY +D ER +D ++E+ Sbjct: 1020 GQSVKPPWERATTAANVPYYIDHERETTHWDHPEMIEL 1057
>CPB1_CAEJA (Q6E3C7) Cytoplasmic polyadenylation element-binding protein 1| Length = 617 Score = 28.5 bits (62), Expect = 8.6 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +1 Query: 346 TAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEV 453 +AEP KV++G LP DV E + F G V V Sbjct: 266 SAEPLYSRKVFIGGLPIDVTEEEVWATFGWFGKVLV 301
>DMDA_DROME (Q9VDW6) Dystrophin, isoforms A/C/DLP1/DLP3| Length = 3497 Score = 28.5 bits (62), Expect = 8.6 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +1 Query: 340 GYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEV 453 G + +PP E N+PY +D ER +D ++E+ Sbjct: 2848 GQSVKPPWERATTAANVPYYIDHERETTHWDHPEMIEL 2885
>CPB1_CAEBR (Q6E3D0) Cytoplasmic polyadenylation element-binding protein 1| Length = 585 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +1 Query: 343 YTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVV 447 ++ EP KV++G LP DV E + F G V Sbjct: 243 FSTEPLYSRKVFIGGLPIDVPDEEVYVTFGSFGKV 277 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,107,233 Number of Sequences: 219361 Number of extensions: 530446 Number of successful extensions: 2625 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 2450 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2623 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits)
