Clone Information

BLAST Search Result

Clone Name	baet65a01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AT7L1_HUMAN (Q9ULK2) Ataxin-7-like protein 1 (Fragment)	33	0.23
2	YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'regio...	33	0.30
3	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	32	0.51
4	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	32	0.51
5	CXA5_CHICK (P18860) Gap junction alpha-5 protein (Connexin-42) (...	32	0.51
6	CNGB1_HUMAN (Q14028) Cyclic nucleotide-gated cation channel 4 (C...	32	0.67
7	PHYB_SORBI (P93527) Phytochrome B	32	0.67
8	RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri...	32	0.67
9	ABIL3_ORYSA (Q5NB83) Probable protein ABIL3 (Abl interactor-like...	31	1.5
10	MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)	31	1.5
11	WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1	30	1.9
12	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	30	1.9
13	MUC1_HYLLA (Q29435) Mucin-1 precursor (MUC-1)	30	1.9
14	MUC1_HUMAN (P15941) Mucin-1 precursor (MUC-1) (Polymorphic epith...	30	1.9
15	CCD95_RAT (Q6AYH2) Coiled-coil domain-containing protein 95	30	2.5
16	EGR2_MOUSE (P08152) Early growth response protein 2 (EGR-2) (Kro...	30	2.5
17	PHC3_HUMAN (Q8NDX5) Polyhomeotic-like protein 3 (hPH3) (Homolog ...	30	2.5
18	NUCKS_HUMAN (Q9H1E3) Nuclear ubiquitous casein and cyclin-depend...	30	2.5
19	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	30	3.3
20	GAB2_HUMAN (Q9UQC2) GRB2-associated binding protein 2 (GRB2-asso...	30	3.3
21	HXA3_HUMAN (O43365) Homeobox protein Hox-A3 (Hox-1E)	30	3.3
22	RT22_MOUSE (Q9CXW2) Mitochondrial 28S ribosomal protein S22 (S22...	30	3.3
23	CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displace...	29	4.3
24	SLM9_SCHPO (O74309) Mitotic control protein slm9	29	4.3
25	PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3	29	4.3
26	EXTN2_ARATH (Q9M1G9) Extensin-2 precursor (AtExt2) (Cell wall hy...	29	4.3
27	MUCDL_RAT (Q9JIK1) Mucin and cadherin-like protein precursor (Mu...	29	4.3
28	FOXL2_HUMAN (P58012) Forkhead box protein L2	29	4.3
29	MMPL3_MYCTU (O53657) Putative membrane protein mmpL3	29	4.3
30	MAP1A_MOUSE (Q9QYR6) Microtubule-associated protein 1A (MAP 1A) ...	29	4.3
31	FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead...	29	4.3
32	CCD95_BOVIN (Q29RS4) Coiled-coil domain-containing protein 95	29	5.7
33	CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22	29	5.7
34	INO80_CRYNE (Q5KHM0) Putative DNA helicase INO80 (EC 3.6.1.-)	29	5.7
35	TF65_CHICK (P98152) Transcription factor p65 (Nuclear factor NF-...	29	5.7
36	MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor (...	29	5.7
37	IE18_PRVIF (P11675) Immediate-early protein IE180	25	6.6
38	IRS1_HCMVA (P09715) Protein IRS1 (HQRF1)	28	7.4
39	PANK4_RAT (Q923S8) Pantothenate kinase 4 (EC 2.7.1.33) (Pantothe...	28	7.4
40	ERF_HUMAN (P50548) ETS domain-containing transcription factor ER...	28	7.4
41	ERF_MOUSE (P70459) ETS domain-containing transcription factor ERF	28	7.4
42	CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor	28	7.4
43	WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-W...	28	7.4
44	IE18_PRVKA (P33479) Immediate-early protein IE180	25	8.5
45	VRP1_YEAST (P37370) Verprolin	28	9.7
46	MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)	28	9.7
47	CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22	28	9.7
48	SSH_XENLA (Q6IVY4) Protein phosphatase Slingshot homolog (EC 3.1...	28	9.7
49	CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22	28	9.7
50	HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)	28	9.7
51	RBF1_CAEEL (P41885) Rabphilin-1	28	9.7

>AT7L1_HUMAN (Q9ULK2) Ataxin-7-like protein 1 (Fragment)|
          Length = 864

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = +1

Query: 7   ASLRLAWRKREGRARHRHTHT-----LTLAPDRKRSAPRSPPSLVSTAPPPSNLGSPKQR 171
           +SL L++ K EG+ R   + +     +T  P       ++PPSL++  P P N  S +Q 
Sbjct: 769 SSLPLSFDKSEGKKRKNSSSSSKACKITKMPGMNSVHKKNPPSLLAPVPDPVNSTSSRQV 828

Query: 172 TESPSSLLCRPHPLS 216
            ++ S  L +  P S
Sbjct: 829 GKNSSLALSQSSPSS 843

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>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and|
           gyrB (ORF 3)
          Length = 437

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +1

Query: 25  WRKREGRARHRHTHTLTLAP-DRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCR 201
           WR+R  R RHR        P DR+R   R+ P   + A  P++  + + R     S    
Sbjct: 339 WRRRRRRVRHREGALPAAHPDDRRRRRRRAHPDAAAYASVPAHAPAHRGRLRVRGSTAAV 398

Query: 202 PHPL 213
           P PL
Sbjct: 399 PRPL 402

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 82  PDRKRSAPRSPPSL-VSTAPPPSNLGSPKQRTESPS 186
           P ++R++P  PP   VS +PPP    SP  +  SPS
Sbjct: 620 PPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPS 655



 Score = 30.0 bits (66), Expect = 2.5
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +1

Query: 4   RASLRLAWRKREGRARHRHTHTLTLAPDRKRSAPRSPPSL--VSTAPPPSNLG--SPKQR 171
           R S  L+ + R+G +  R T         KR +P   P     S++PPP   G  S  QR
Sbjct: 651 RRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQR 710

Query: 172 TESPS 186
            +SPS
Sbjct: 711 RQSPS 715



 Score = 29.3 bits (64), Expect = 4.3
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +1

Query: 82  PDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHPLSARAT 228
           P R+R  P  PP   + +PPP       +R   P      P P   R T
Sbjct: 566 PPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRT 614



 Score = 28.5 bits (62), Expect = 7.4
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +1

Query: 28  RKREGRARHRHTHTLTLAPDRKRSAP--RSPPSLVSTAPPPSNLGSPKQRTESPSSLLCR 201
           R++E   R R   + +  P R+R +P    PP    T  PP     P++RT SP      
Sbjct: 536 RQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPP-----PRRRTPSPPPRRRS 590

Query: 202 PHP 210
           P P
Sbjct: 591 PSP 593

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 82  PDRKRSAPRSPPSL-VSTAPPPSNLGSPKQRTESPS 186
           P ++R++P  PP   VS +PPP    SP  +  SPS
Sbjct: 634 PPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPS 669



 Score = 29.6 bits (65), Expect = 3.3
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +1

Query: 4   RASLRLAWRKREGRARHRHTHTLTLAPDRKRSAPRSPPSLVST-APPPSNLG--SPKQRT 174
           R S  L+ + R+G +  R T         KR +P   P    T +PPP   G  S  QR 
Sbjct: 665 RRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASSSPQRR 724

Query: 175 ESPS 186
           +SPS
Sbjct: 725 QSPS 728



 Score = 29.3 bits (64), Expect = 4.3
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +1

Query: 82  PDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHPLSARAT 228
           P R+R  P  PP   + +PPP       +R   P      P P   R T
Sbjct: 580 PPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRT 628

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>CXA5_CHICK (P18860) Gap junction alpha-5 protein (Connexin-42) (Cx42)|
          Length = 368

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 19  LAWRKREGRARHRHTHTLTLAPDRKRSAPRSPPSLVSTAPPPSN--LGSPKQRTESPSS 189
           L W+K + R    +  + + AP R  SAP+   + + T PP  N  L SP  +  SP S
Sbjct: 233 LGWKKAKERCSRAYKPSPSTAPRRLESAPQVERAQMYTPPPDFNQCLASPNGKFISPFS 291

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>CNGB1_HUMAN (Q14028) Cyclic nucleotide-gated cation channel 4 (CNG channel 4)|
           (CNG-4) (CNG4) (Cyclic nucleotide-gated cation channel
           modulatory subunit)
          Length = 909

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 46  ARHRHTHTLTLAPDRKRS-APRSPPSLVSTAPPPSNLGSPKQRTESPS 186
           A  +HTH    A D      P  PP    ++PPP++LGS +   E P+
Sbjct: 827 APDQHTHPKEAATDPPAPRTPPEPPGSPPSSPPPASLGSCEGEEEGPA 874

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>PHYB_SORBI (P93527) Phytochrome B|
          Length = 1178

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +1

Query: 97  SAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHPLSAR 222
           S   S PSL S APPP +LG+  +   SPSS +      +AR
Sbjct: 156 SPHHSVPSLDSAAPPPVSLGADARLLFSPSSAVLLERAFAAR 197

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>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4|
           (RNA-binding protein srp-2) (CeSC35)
          Length = 196

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 15/63 (23%)
 Frame = +1

Query: 28  RKREGRARHRHT-HTLTLAPDRKRSAPRSPPSLV--------------STAPPPSNLGSP 162
           R R  R R R   ++ + +P R RS  RSPPS                S +PPP   GSP
Sbjct: 115 RSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSP 174

Query: 163 KQR 171
           K+R
Sbjct: 175 KER 177

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>ABIL3_ORYSA (Q5NB83) Probable protein ABIL3 (Abl interactor-like protein 3)|
          Length = 317

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 4   RASLRLAWRKREGRARHRHTHTLTLAPDRKRSAPRSPPSLVSTAPPPSNLGSP 162
           R S   + R     AR  H  + +L+P RK  A    P ++ST    +  GSP
Sbjct: 191 RQSTMRSARSPSPSARGTHHRSRSLSPSRKARAKSPSPQIISTQTKETRAGSP 243

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>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 73   TLAPDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHP 210
            T  P    +   SPP++ +T PPP+   SP   T +       P P
Sbjct: 1575 TTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSP 1620



 Score = 29.6 bits (65), Expect = 3.3
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 61   THTLTLAPDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHP 210
            T T TL P    + P  PP+  +T PP +    P   T SP ++     P
Sbjct: 1551 TSTTTLPPT---TTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPP 1597



 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 109  SPPSLVSTAPPPSNLGSPKQRTESPSSLLCRP 204
            SPP   +T PPP+   SP   T SP +    P
Sbjct: 1455 SPPISTTTTPPPTTTPSPPTTTPSPPTTTPSP 1486



 Score = 28.5 bits (62), Expect = 7.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 61   THTLTLAPDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESP 183
            T T TL P    + P  PP+  +T PP +    P   T SP
Sbjct: 1630 TSTTTLPPT---TTPSPPPTTTTTPPPTTTPSPPTTTTPSP 1667



 Score = 28.5 bits (62), Expect = 7.4
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 61   THTLTLAPDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHP 210
            T T TL P    +   SPP+  +T PPP+   SP   T +       P P
Sbjct: 1411 TTTTTLPP----TTTPSPPTTTTTTPPPTTTPSPPITTTTTPLPTTTPSP 1456

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>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1|
          Length = 574

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 103 PRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHP 210
           P +PPSL  +APP   +G+P      PS+ +  P P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460

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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +1

Query: 4   RASLRLAWRKREGRARHRHTHTLTLAPDRKRSAPRSPP--SLVSTAPPPSNLG--SPKQR 171
           R S  ++ + R+G    R        P  KR +P   P  S  S++PPP   G  +  QR
Sbjct: 644 RRSPSISSKHRKGSPPSRSNRETRSPPQNKRDSPSPRPRASHTSSSPPPLRRGASASPQR 703

Query: 172 TESPS 186
            +SPS
Sbjct: 704 RQSPS 708



 Score = 29.6 bits (65), Expect = 3.3
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 67  TLTLAPDRKRSAPRSPPSL--VSTAPPPSNLGSPKQRTESPS 186
           T +  P  KR A  SP S   VS +PPP    SP  +  SPS
Sbjct: 607 TASPPPPPKRRASPSPQSKRRVSHSPPPKQRSSPAAKRRSPS 648

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>MUC1_HYLLA (Q29435) Mucin-1 precursor (MUC-1)|
          Length = 475

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
 Frame = +1

Query: 64  HTLTLAPDRK-------------RSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRP 204
           H +T APD +              SAP + P+L STAPP  N+ S        +S L   
Sbjct: 136 HGVTSAPDTRPTLGSTAPPVHGVTSAPDTRPTLGSTAPPVHNVTSASGSASGSASTLVH- 194

Query: 205 HPLSARAT 228
           +  SARAT
Sbjct: 195 NGTSARAT 202

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>MUC1_HUMAN (P15941) Mucin-1 precursor (MUC-1) (Polymorphic epithelial mucin)|
            (PEM) (PEMT) (Episialin) (Tumor-associated mucin)
            (Carcinoma-associated mucin) (Tumor-associated epithelial
            membrane antigen) (EMA) (H23AG) (Peanut-reactive urinary
            mucin) (PUM)
          Length = 1255

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
 Frame = +1

Query: 64   HTLTLAPDRK-------------RSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRP 204
            H +T APD +              SAP + P+L STAPP  N+ S        +S L   
Sbjct: 916  HGVTSAPDTRPAPGSTAPPAHGVTSAPDNRPALGSTAPPVHNVTSASGSASGSASTLVH- 974

Query: 205  HPLSARAT 228
            +  SARAT
Sbjct: 975  NGTSARAT 982

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>CCD95_RAT (Q6AYH2) Coiled-coil domain-containing protein 95|
          Length = 244

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +1

Query: 73  TLAPDRKRSAPR-SPPSLVSTAPPPSNLGSPKQRTESP----SSLLCRPHP 210
           T AP RKRS P    PS  S + PPS+ G P Q + +P    SSL   P+P
Sbjct: 90  TPAPKRKRSPPMGGAPSPSSLSLPPSS-GFPLQTSGAPSPYLSSLASPPYP 139

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>EGR2_MOUSE (P08152) Early growth response protein 2 (EGR-2) (Krox-20 protein)|
          Length = 470

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 49  RHRHTHTLTLAPDRKRSAPRSPPSLVSTAPPP 144
           R RHT       +RK SAP +PPS  S+A  P
Sbjct: 410 RKRHTKIHLRQKERKSSAPSAPPSAQSSASGP 441

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>PHC3_HUMAN (Q8NDX5) Polyhomeotic-like protein 3 (hPH3) (Homolog of|
           polyhomeotic 3) (Early development regulatory protein 3)
          Length = 983

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 58  HTHTLTLAPDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHPLSARA 225
           H   LT++P++ +SA +S    V  +PPP +  S           L +PHPL + A
Sbjct: 378 HPSPLTVSPNQSQSAQQS----VVVSPPPPHSPSQSPTIIIHPQALIQPHPLVSSA 429

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>NUCKS_HUMAN (Q9H1E3) Nuclear ubiquitous casein and cyclin-dependent kinases|
           substrate (P1)
          Length = 243

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 73  TLAPDRKRSAPRSPPSL-VSTAPPPSNLGSPKQRTESPS 186
           T +P  +   P SPP    ST+PPP   G      E+PS
Sbjct: 202 TPSPKEEDEEPESPPEKKTSTSPPPEKSGDEGSEDEAPS 240

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +1

Query: 82  PDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHPLSARAT 228
           P R+R +P  PP   + +PPP       +R   P      P P   R T
Sbjct: 585 PPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRT 633

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>GAB2_HUMAN (Q9UQC2) GRB2-associated binding protein 2 (GRB2-associated binder|
           2) (pp100)
          Length = 676

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 76  LAPDRKRSAPR--SPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHPLSARA 225
           L  +RK SAP   S P+L +  PP SN   P   T +P   L     +S RA
Sbjct: 152 LLRERKSSAPSHSSQPTLFTFEPPVSNHMQPTLSTSAPQEYLYLHQCISRRA 203

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>HXA3_HUMAN (O43365) Homeobox protein Hox-A3 (Hox-1E)|
          Length = 443

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 79  APDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHPL 213
           AP   + AP+ P    +  PPPS+   P+  + +P+       PL
Sbjct: 101 APQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPL 145

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>RT22_MOUSE (Q9CXW2) Mitochondrial 28S ribosomal protein S22 (S22mt) (MRP-S22)|
          Length = 359

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 25  WRKREGRARHRHTHTLTLAPDRKRSAPRSPPSLVSTAPPPSNLGSPKQ----RTESPSSL 192
           WR + G  R R   T       + +A R P +L++T P P  +G P++      ES SS 
Sbjct: 11  WRFQLGSRRARRVCT-------RATAQRHPDALLATRPQPFEVGQPRRLLSSEAESGSSE 63

Query: 193 LCRP 204
           + +P
Sbjct: 64  VKKP 67

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>CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displacement protein)|
            (CDP)
          Length = 1505

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 97   SAPRSPPSLVSTAPPPSNLGSPK--QRTESPSSLLCRPHPLSAR 222
            +AP   P+  S+APPPSN  S    +R  S  SL   P    AR
Sbjct: 1426 AAPGEGPAAPSSAPPPSNSSSSSAPRRPSSLQSLFGLPEAAGAR 1469

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>SLM9_SCHPO (O74309) Mitotic control protein slm9|
          Length = 807

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +1

Query: 103 PRSPPSLVSTAPPPSNLGSPK-QRTESPSSLLCR---PHPLS 216
           P SP   +   PPPS   SP+ +R + P   + R   PHP S
Sbjct: 404 PESPSKSILLRPPPSIASSPESKRRKCPKKFVARPPVPHPTS 445

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>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3|
          Length = 981

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 58  HTHTLTLAPDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHPLSARA 225
           H   LT++P++ +SA +S    V  +PPP +  S           L +PHPL + A
Sbjct: 375 HPPPLTVSPNQAQSAQQS----VVVSPPPPHSPSQSPTIIIHPQALIQPHPLVSSA 426

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>EXTN2_ARATH (Q9M1G9) Extensin-2 precursor (AtExt2) (Cell wall|
           hydroxyproline-rich glycoprotein 1) (HRGP1)
          Length = 743

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 67  TLTLAPDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESP 183
           T T AP+ +  +P  PP + S+ PPP+   SPK   +SP
Sbjct: 59  TYTPAPEVEYKSP-PPPYVYSSPPPPTYSPSPKVDYKSP 96

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>MUCDL_RAT (Q9JIK1) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin) (GP100)
          Length = 862

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 76  LAPDRKRSAPRSPPSLVSTAPPPSNLGSPK--QRTESPSSL 192
           L P    S+  +PPS +  +P P   GSPK  Q  +SPS++
Sbjct: 747 LRPPSPMSSSPTPPSSMPPSPQPKASGSPKTVQAGDSPSAV 787

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>FOXL2_HUMAN (P58012) Forkhead box protein L2|
          Length = 376

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +1

Query: 52  HRHTHTLTLAPDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHPLSA 219
           H H H L  A     + P +PP   + APPP  L      T +P +    P P SA
Sbjct: 293 HPHAHHLHAAA----APPPAPPHHGAAAPPPGQLSPASPATAAPPA----PAPTSA 340

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>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3|
          Length = 944

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +1

Query: 7   ASLRLAWRKREGRARHRHTHTLTLAPDRKRSAPRSPPSLV----STAPPPSNLGSPKQRT 174
           A L  A    + R  H  TH L  +P   RS+P S P L     +TA P +  G+   R 
Sbjct: 771 AGLVAARAAGDPRPPHDPTHPLAESPRPARSSPASSPELTPALEATAAPAAPSGASTTRM 830

Query: 175 ESPSS 189
           +  SS
Sbjct: 831 QIGSS 835

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>MAP1A_MOUSE (Q9QYR6) Microtubule-associated protein 1A (MAP 1A) (Fragment)|
          Length = 1021

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 97  SAPRSPPSLVSTAPPPSNLGSPKQRTESPSSL 192
           S PR+PP+    APPP+  G  +    SP  L
Sbjct: 724 SEPRTPPAQKGAAPPPAASGHRELALSSPEDL 755

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>FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead factor)|
           (P-Frk)
          Length = 375

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +1

Query: 52  HRHTHTLTLAPDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHPLSA 219
           H H H L  A     + P +PP   + APPP  L      T +P +    P P SA
Sbjct: 292 HPHAHHLHAAA----APPPAPPHHGAAAPPPGQLSPASPATAAPPA----PAPTSA 339

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>CCD95_BOVIN (Q29RS4) Coiled-coil domain-containing protein 95|
          Length = 244

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 73  TLAPDRKRSAP-RSPPSLVSTAPPPSNLGSPKQRTESPSSLL 195
           T AP RKRS P    PS  S + PPS  G P Q + +PS  L
Sbjct: 90  TPAPKRKRSPPLGGAPSPSSLSLPPST-GFPLQASRAPSPYL 130

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>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 31/118 (26%), Positives = 39/118 (33%), Gaps = 10/118 (8%)
 Frame = +1

Query: 43   RARHRHTHTLTLAPDRKRSAPRSPPSLVSTAPPPSNLGSPKQR------TESPSSLLCRP 204
            R R R     + +P R RS  RSP      A PP   G    R      + SPS    R 
Sbjct: 804  RGRGRSYDRYSRSPSRSRSRTRSP-----AAAPPIRRGRSGTRSRSRSYSRSPSPPPARG 858

Query: 205  HPLSARATMXXXXXXXXXXXXXXXXXXXXXXXXRH----GRLRKGFPYTSRSKAGFQI 366
            +P   RA +                         H     RLR+G    SRS++   I
Sbjct: 859  YPTRGRAPVSNNDRAAAASGKRRREGSYSASRSPHPPPQQRLRRGSYSRSRSRSPIPI 916

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>INO80_CRYNE (Q5KHM0) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1765

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +1

Query: 67  TLTLAPDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRP 204
           T  L  DR R     PP      PPPS +G    R  SPS+ +  P
Sbjct: 160 TERLPIDRYRRDIDVPPLPRQLPPPPSEIGRMADRARSPSAPIAPP 205

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>TF65_CHICK (P98152) Transcription factor p65 (Nuclear factor NF-kappa-B p65|
           subunit)
          Length = 558

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 82  PDRKRSAPRSPPSLVSTAPPP-SNLGSPKQRTESPSSL 192
           P R   AP+ PPS+V   P P   LG P   + +P  L
Sbjct: 341 PSRPPPAPQQPPSMVGAPPAPLFPLGVPPASSPTPEPL 378

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>MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin)
          Length = 831

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 76  LAPDRKRSAPRSPPSLVSTAPPPSNLGSPK--QRTESPSSL 192
           L P    S+  +PPS    +P P   GSPK  Q  +SPS++
Sbjct: 717 LRPPSPMSSSPTPPSSTPPSPQPKASGSPKTVQAGDSPSAV 757

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>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 25.4 bits (54), Expect(2) = 6.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 76  LAPDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSS 189
           L+P R  SAPR+P +  + A   ++  S    + S SS
Sbjct: 366 LSPARSPSAPRAPAAAAAAARRSASSSSSSSSSSSSSS 403



 Score = 21.6 bits (44), Expect(2) = 6.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 174 GIPFVAAVPPPSP 212
           G P   A PPPSP
Sbjct: 416 GAPLARAGPPPSP 428

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>IRS1_HCMVA (P09715) Protein IRS1 (HQRF1)|
          Length = 846

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +1

Query: 82  PDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRP 204
           P +K   P  PP L  T P P  L  PKQR  S    +  P
Sbjct: 739 PPQKHKPPDKPPRLCKTGPGPPPL-PPKQRHGSTDGKVSAP 778

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>PANK4_RAT (Q923S8) Pantothenate kinase 4 (EC 2.7.1.33) (Pantothenic acid|
           kinase 4) (rPanK4)
          Length = 773

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 18/30 (60%), Positives = 18/30 (60%)
 Frame = -2

Query: 182 GDSVRCLGLPRLDGGGAVETRLGGERGADL 93
           G S  CL L RLD G AV  R   ERGADL
Sbjct: 694 GSSPPCLDLSRLDKGLAVLVR---ERGADL 720

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>ERF_HUMAN (P50548) ETS domain-containing transcription factor ERF (Ets2|
           repressor factor)
          Length = 548

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +1

Query: 82  PDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHPLSAR 222
           P R    P  PP    T P PS+  S    + SP     +P PL  R
Sbjct: 342 PQRPDKCPL-PPMAPETPPVPSSASSSSSSSSSPFKFKLQPPPLGRR 387

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>ERF_MOUSE (P70459) ETS domain-containing transcription factor ERF|
          Length = 551

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +1

Query: 82  PDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHPLSAR 222
           P R    P  PP    T P PS+  S    + SP     +P PL  R
Sbjct: 342 PQRPDKCPL-PPMAPETPPVPSSASSSSSSSSSPFKFKLQPPPLGRR 387

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>CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor|
          Length = 1691

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 97  SAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHPLS 216
           S PR  P L     PP +LG P Q+ E   + L  P  L+
Sbjct: 490 SGPRGQPGLPGLPGPPGSLGFPGQKGEKGHAGLTGPKGLT 529

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>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = +1

Query: 82  PDRKRSAPRSPPSLVST-APPPSNLGSPKQRTESPSSLLCRPHPLSA 219
           P R R AP  PPS   T APPP     P      P      P PL A
Sbjct: 303 PARGRGAPPPPPSRAPTAAPPPPPPSRPGVGAPPPPPNRMYPPPLPA 349

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>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 25.0 bits (53), Expect(2) = 8.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 76  LAPDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSS 189
           L+P R  SAPR+P +    +   S+  S    + S SS
Sbjct: 358 LSPARSPSAPRAPAAAARRSASSSSSSSSSSSSSSSSS 395



 Score = 21.6 bits (44), Expect(2) = 8.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 174 GIPFVAAVPPPSP 212
           G P   A PPPSP
Sbjct: 408 GAPLARAGPPPSP 420

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>VRP1_YEAST (P37370) Verprolin|
          Length = 817

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
 Frame = +1

Query: 64  HTLTLAPDRKRSAPRSP----PSLVSTAPPPSNL----GSPKQRTESPSSLLCRPHPLSA 219
           H     P    SAP  P    P L  TAPPP +L     +PK+ T +P+     P PL A
Sbjct: 302 HKSPSQPPLPSSAPPIPTSHAPPLPPTAPPPPSLPNVTSAPKKATSAPAP---PPPPLPA 358

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>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)|
          Length = 1513

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 67   TLTLAPDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRP 204
            T T +P    ++P   P+  +T+P PS   S    T SP++    P
Sbjct: 1453 TSTTSPTTSTTSPTPSPTTSTTSPTPSPTTSTTSPTPSPTTSTTSP 1498

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>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22|
          Length = 881

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 13/74 (17%)
 Frame = +1

Query: 28   RKREGRARHRHTHTLTLAPDRKRS----APRSPP--------SLV-STAPPPSNLGSPKQ 168
            R  + RAR R   + +L+P R+R+    +P+ PP        SL  S +PPP      ++
Sbjct: 784  RAVDARARGRRYSSQSLSPPRRRAERSVSPQRPPPGRRPRGDSLSRSPSPPPRYAREQRR 843

Query: 169  RTESPSSLLCRPHP 210
            R  S S+   R  P
Sbjct: 844  RRNSSSASASRSPP 857

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>SSH_XENLA (Q6IVY4) Protein phosphatase Slingshot homolog (EC 3.1.3.48) (EC|
           3.1.3.16) (xSSH) (Slingshot-related protein)
          Length = 691

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 40  GRARHRHTHTLTLAPDRKRSA----PRSPPSLVSTAPPPSNLGSPKQRTESP 183
           G  R   T+   L   ++R +    P S PSL   +PPP N  SP   T SP
Sbjct: 422 GFMRQLQTYQGILGASKQRHSYLWDPSSAPSLPLMSPPPKNFSSP---TTSP 470

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>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22|
          Length = 907

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 15/76 (19%)
 Frame = +1

Query: 43   RARHRHTHTLTLAPDRK----RSAPRS--PP---------SLVSTAPPPSNLGSPKQRTE 177
            R+R     + T +PDR      +APRS  PP         S +S +P  S   SP++R +
Sbjct: 778  RSRSPRGRSYTRSPDRAGPQASTAPRSGGPPRKAGSVDNRSPLSRSPSGSRSPSPRRRRD 837

Query: 178  SPSSLLCRPHPLSARA 225
            SPS    R      RA
Sbjct: 838  SPSRSPVRDRESGGRA 853

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>HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)|
          Length = 443

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 79  APDRKRSAPRSPPSLVSTAPPPSNLGSPKQRTESPSSLLCRPHPL 213
           AP   +  P+ P    +  PPPS++  P+    +P+       PL
Sbjct: 102 APQPPQPPPQPPAPTPAAPPPPSSVSPPQSANSNPTPASTAKSPL 146

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>RBF1_CAEEL (P41885) Rabphilin-1|
          Length = 1106

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 10  SLRLAWRKREGRARHRHTHTLTLAPDRKRSAPRSPPSLVSTAP 138
           S R A  +R  R  H H + L    D   S+P S PS  ST+P
Sbjct: 514 SRREANMERFSRHTHAHANRLYSTDDDDDSSPESRPSTRSTSP 556


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.128    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,976,191
Number of Sequences: 219361
Number of extensions: 731966
Number of successful extensions: 4336
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 3422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4223
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result