>YTF3_RHILT (Q52871) Hypothetical UPF0142 protein in tfuA 3'region (ORF3)|
          Length = 420

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 22/62 (35%), Positives = 34/62 (54%)
 Frame = -1

Query: 220 SSRHRLATLPGAGDDMVCVRLLSLVDRSAVPRAVVGVLTGDPRLRTYVPTYRRWRYMTIN 41
           +++ RL  + G+ DD    R+   +DRSA  + VV +  GD R+R + P  R  R  TI 
Sbjct: 300 AAQSRLTAIAGSRDDF-SPRIYQRLDRSAAMQQVVELCEGDGRMRPFQP--RHHRKATIQ 356

Query: 40  ES 35
           E+
Sbjct: 357 ET 358

>RGMA_HUMAN (Q96B86) Repulsive guidance molecule A precursor (RGM domain family|
           member A)
          Length = 450

 Score = 32.7 bits (73), Expect = 0.46
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
 Frame = -1

Query: 220 SSRHRLATLPGAGDDM-------VCVRLLSLVDRSAVPRAVVGVLTGDPRLRTYVPTYRR 62
           +S+ RL TLP AGD         +C    S    SA P      L GDP LRT+     R
Sbjct: 121 TSQPRLRTLPPAGDSQERSDSPEICHYEKSFHKHSATPNYTHCGLFGDPHLRTFTD---R 177

Query: 61  WRYMTINESWLLV 23
           ++   +  +W L+
Sbjct: 178 FQTCKVQGAWPLI 190

>RGMA_MOUSE (Q6PCX7) Repulsive guidance molecule A precursor (RGM domain family|
           member A)
          Length = 454

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
 Frame = -1

Query: 220 SSRHRLATLPGAGDDM-------VCVRLLSLVDRSAVPRAVVGVLTGDPRLRTYVPTYRR 62
           +S+ R+ TLP AGD         +C    S    SA P      L GDP LRT+   ++ 
Sbjct: 122 TSQPRVRTLPPAGDSQERSDSPEICHYEKSFHKHSAAPNYTHCGLFGDPHLRTFTDHFQT 181

Query: 61  WRYMTINESWLLV 23
            +   +  +W L+
Sbjct: 182 CK---VQGAWPLI 191

>LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain protein 6)|
          Length = 624

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 56  APPPIRRYVRA*P-RITG*DTHHRARHRRSIDKRQQTHAHH 175
           APP  RR  R+ P R      HH  R RR   +R+ +H HH
Sbjct: 492 APPAQRRRPRSPPPRTPSCHHHHHHRRRRQRHRRRGSHHHH 532

>PGKC_RALEU (P50319) Phosphoglycerate kinase, chromosomal (EC 2.7.2.3)|
          Length = 413

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -1

Query: 232 PAPCSSRHRLATLPGAGDDMVCVRLLSLVDRSAVPRAVVGVLTGDPRLRTYVP 74
           P P ++ H LA L  AG  +   R+    D + VP+   G +T D R+R  VP
Sbjct: 12  PKPAAAPHTLAALLAAGG-LAGKRVFIRADLN-VPQDAAGAITDDTRIRASVP 62

>RGMA_CHICK (Q8JG54) Repulsive guidance molecule A precursor|
          Length = 432

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
 Frame = -1

Query: 220 SSRHRLATLPGAGDDM-------VCVRLLSLVDRSAVPRAVVGVLTGDPRLRTYVPTYRR 62
           +S+ RL TLP  GD         +C    S    SA P      L GDP LRT+  T++ 
Sbjct: 103 TSQPRLRTLP-PGDSQERSDSPEICHYEKSFHKHSAAPNYTHCGLFGDPHLRTFTDTFQT 161

Query: 61  WRYMTINESWLLV 23
            +   +  +W L+
Sbjct: 162 CK---VQGAWPLI 171


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,702,511
Number of Sequences: 219361
Number of extensions: 708429
Number of successful extensions: 2149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2145
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)