ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet64h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475910.1| Oryza sativa (japonica cultivar-group), predic... 78 3e-11
2gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome... 78 3e-11
3gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome... 78 3e-11
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
5dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
6gb|AC093824.3| Homo sapiens BAC clone RP11-386B13 from 4, comple... 46 0.10
7dbj|AB209764.1| Homo sapiens mRNA for solute carrier family 25 m... 46 0.10
8gb|J04982.1|HUMANT1 Human heart/skeletal muscle ATP/ADP transloc... 46 0.10
9gb|AY456922.1| Thermobia domestica homeodomain transcription fac... 44 0.40
10gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 44 0.40
11gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 1.6
12ref|NM_192393.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
13gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
14gb|AC135424.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
15emb|BX046956.1|CNS098E8 Single read from an extremity of a full-... 42 1.6
16gb|AF521085.1| Streptomyces nanchangensis NS3226 polyether ionop... 42 1.6
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
18dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
19emb|BX649380.7| Zebrafish DNA sequence from clone CH211-87P6 in ... 42 1.6
20dbj|AK063136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
21gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 1.6
22gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 42 1.6
23gb|AY365053.1| Ralstonia eutropha JMP134 plasmid pJP4, complete ... 40 6.2
24ref|NM_197755.1| Oryza sativa (japonica cultivar-group) putative... 40 6.2
25gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.2
26gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 6.2
27gb|AE007199.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 6.2
28gb|CP000093.1| Ralstonia eutropha JMP134 plasmid 1, complete seq... 40 6.2
29emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genom... 40 6.2
30emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete ... 40 6.2
31emb|AL731613.5|OSJN00257 Oryza sativa genomic DNA, chromosome 4,... 40 6.2
32emb|AL954817.9| Mouse DNA sequence from clone RP24-84L18 on chro... 40 6.2
33gb|AC105270.2| Homo sapiens chromosome 1 clone RP4-684L20, compl... 40 6.2
34gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.2
35gb|AC093559.2| Homo sapiens chromosome 1 clone RP11-138K16, comp... 40 6.2
36gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 gen... 40 6.2
37gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 6.2
38gb|AF279141.1|AF279141 Rhodococcus sp. 19070 benzoate dioxygenas... 40 6.2
39gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence 40 6.2
40dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
41dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
42dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
43gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.2
44dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 6.2
45dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
46dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
47dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
48gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
49gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 6.2
50gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipie... 40 6.2
51gb|DQ065837.1| Burkholderia cepacia strain 2a plasmid pIJB1, com... 40 6.2 
>ref|XM_475910.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1224

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                       
Query: 339 cgctcgccgcacgccggcgcgtgcatctacggccacgccgacctgctcgcggccgccggc 398
           |||||||||||||||||||||||| | || ||||||| |||||| ||||| || || |||
Sbjct: 169 cgctcgccgcacgccggcgcgtgcgtgtatggccacggcgacctcctcgccgcggcgggc 228

                                                          
Query: 399 gtgtccaacgcgggccactacgccgtcaccaagttcatctacgccac 445
           | ||||  ||| |||  |||||| || ||||||||| ||||||||||
Sbjct: 229 gcgtccgccgccggcagctacgcggtgaccaagttcgtctacgccac 275
to top
>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10,
              complete sequence
          Length = 187034

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                          
Query: 339    cgctcgccgcacgccggcgcgtgcatctacggccacgccgacctgctcgcggccgccggc 398
              |||||||||||||||||||||||| | || ||||||| |||||| ||||| || || |||
Sbjct: 166930 cgctcgccgcacgccggcgcgtgcgtgtatggccacggcgacctcctcgccgcggcgggc 166871

                                                             
Query: 399    gtgtccaacgcgggccactacgccgtcaccaagttcatctacgccac 445
              | ||||  ||| |||  |||||| || ||||||||| ||||||||||
Sbjct: 166870 gcgtccgccgccggcagctacgcggtgaccaagttcgtctacgccac 166824
to top
>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08,
             complete sequence
          Length = 119500

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                         
Query: 339   cgctcgccgcacgccggcgcgtgcatctacggccacgccgacctgctcgcggccgccggc 398
             |||||||||||||||||||||||| | || ||||||| |||||| ||||| || || |||
Sbjct: 17612 cgctcgccgcacgccggcgcgtgcgtgtatggccacggcgacctcctcgccgcggcgggc 17553

                                                            
Query: 399   gtgtccaacgcgggccactacgccgtcaccaagttcatctacgccac 445
             | ||||  ||| |||  |||||| || ||||||||| ||||||||||
Sbjct: 17552 gcgtccgccgccggcagctacgcggtgaccaagttcgtctacgccac 17506
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                            
Query: 339      cgctcgccgcacgccggcgcgtgcatctacggccacgccgacctgctcgcggccgccggc 398
                |||||||||||||||||||||||| | || ||||||| |||||| ||||| || || |||
Sbjct: 28382688 cgctcgccgcacgccggcgcgtgcgtgtatggccacggcgacctcctcgccgcggcgggc 28382629

                                                               
Query: 399      gtgtccaacgcgggccactacgccgtcaccaagttcatctacgccac 445
                | ||||  ||| |||  |||||| || ||||||||| ||||||||||
Sbjct: 28382628 gcgtccgccgccggcagctacgcggtgaccaagttcgtctacgccac 28382582



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 333      cagcgccgctcgccgcacgcc 353
                |||||||||||||||||||||
Sbjct: 16050568 cagcgccgctcgccgcacgcc 16050548
to top
>dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E01, full
           insert sequence
          Length = 1526

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                       
Query: 339 cgctcgccgcacgccggcgcgtgcatctacggccacgccgacctgctcgcggccgccggc 398
           |||||||||||||||||||||||| | || ||||||| |||||| ||||| || || |||
Sbjct: 253 cgctcgccgcacgccggcgcgtgcgtgtatggccacggcgacctcctcgccgcggcgggc 312

                                                          
Query: 399 gtgtccaacgcgggccactacgccgtcaccaagttcatctacgccac 445
           | ||||  ||| |||  |||||| || ||||||||| ||||||||||
Sbjct: 313 gcgtccgccgccggcagctacgcggtgaccaagttcgtctacgccac 359
to top
>gb|AC093824.3| Homo sapiens BAC clone RP11-386B13 from 4, complete sequence
          Length = 151262

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 211    ggcgcgagctgcagggcgcgggg 233
              |||||||||||||||||||||||
Sbjct: 145283 ggcgcgagctgcagggcgcgggg 145305
to top
>dbj|AB209764.1| Homo sapiens mRNA for solute carrier family 25 member 4 variant
           protein
          Length = 3995

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 211 ggcgcgagctgcagggcgcgggg 233
           |||||||||||||||||||||||
Sbjct: 272 ggcgcgagctgcagggcgcgggg 294
to top
>gb|J04982.1|HUMANT1 Human heart/skeletal muscle ATP/ADP translocator (ANT1) gene,
            complete cds
          Length = 5768

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 211  ggcgcgagctgcagggcgcgggg 233
            |||||||||||||||||||||||
Sbjct: 1781 ggcgcgagctgcagggcgcgggg 1803
to top
>gb|AY456922.1| Thermobia domestica homeodomain transcription factor Hox3/zen
           (Hox3/zen) mRNA, partial cds
          Length = 1154

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 8   ctgtagtagtggtagtactagc 29
           ||||||||||||||||||||||
Sbjct: 646 ctgtagtagtggtagtactagc 667
to top
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 326     caactcgcagcgccgctcgccg 347
               ||||||||||||||||||||||
Sbjct: 1279961 caactcgcagcgccgctcgccg 1279940
to top
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 368     cggccacgccgacctgctcgcggcc 392
               ||||| |||||||||||||||||||
Sbjct: 2929389 cggcctcgccgacctgctcgcggcc 2929413
to top
>ref|NM_192393.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1458

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 342 tcgccgcacgccggcgcgtgc 362
           |||||||||||||||||||||
Sbjct: 169 tcgccgcacgccggcgcgtgc 189
to top
>gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1036C05,
            complete sequence
          Length = 143400

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 333  cagcgccgctcgccgcacgcc 353
            |||||||||||||||||||||
Sbjct: 1738 cagcgccgctcgccgcacgcc 1718
to top
>gb|AC135424.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015F11,
              complete sequence
          Length = 177574

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 333    cagcgccgctcgccgcacgcc 353
              |||||||||||||||||||||
Sbjct: 136319 cagcgccgctcgccgcacgcc 136299
to top
>emb|BX046956.1|CNS098E8 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC20DE10 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 955

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 117 accaccgcgcgcggcaccgcc 137
           |||||||||||||||||||||
Sbjct: 127 accaccgcgcgcggcaccgcc 107
to top
>gb|AF521085.1| Streptomyces nanchangensis NS3226 polyether ionophore nanchangmycin
             biosynthetic gene cluster, complete sequence
          Length = 132544

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 374   cgccgacctgctcgcggccgccggc 398
             |||||| ||||||||||||||||||
Sbjct: 77745 cgccgatctgctcgcggccgccggc 77721
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 342      tcgccgcacgccggcgcgtgc 362
                |||||||||||||||||||||
Sbjct: 26380000 tcgccgcacgccggcgcgtgc 26379980
to top
>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0032K15
          Length = 126195

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 342   tcgccgcacgccggcgcgtgc 362
             |||||||||||||||||||||
Sbjct: 53865 tcgccgcacgccggcgcgtgc 53845
to top
>emb|BX649380.7| Zebrafish DNA sequence from clone CH211-87P6 in linkage group 4,
            complete sequence
          Length = 172167

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 4    tatactgtagtagtggtagta 24
            |||||||||||||||||||||
Sbjct: 7558 tatactgtagtagtggtagta 7538
to top
>dbj|AK063136.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-G02, full
           insert sequence
          Length = 705

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 342 tcgccgcacgccggcgcgtgc 362
           |||||||||||||||||||||
Sbjct: 296 tcgccgcacgccggcgcgtgc 316
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 331     cgcagcgccgctcgccgcacgccggcgcg 359
               |||| ||||||||||||| ||||||||||
Sbjct: 2048092 cgcatcgccgctcgccgctcgccggcgcg 2048064
to top
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 7       actgtagtagtggtagtacta 27
               |||||||||||||||||||||
Sbjct: 3410202 actgtagtagtggtagtacta 3410182
to top
>gb|AY365053.1| Ralstonia eutropha JMP134 plasmid pJP4, complete sequence
          Length = 87688

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   gcgccgctcgccgcacgccg 354
             ||||||||||||||||||||
Sbjct: 41060 gcgccgctcgccgcacgccg 41041
to top
>ref|NM_197755.1| Oryza sativa (japonica cultivar-group) putative lipase
           (OSJNBb0089A17.13), mRNA
          Length = 1605

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 237 tgggacgggctgctggacccgctggacc 264
           |||||||||||||| |||||||| ||||
Sbjct: 442 tgggacgggctgctcgacccgctcgacc 469
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 346     cgcacgccggcgcgtgcatc 365
               ||||||||||||||||||||
Sbjct: 2062348 cgcacgccggcgcgtgcatc 2062367
to top
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      ctgtagtagtggtagtacta 27
              ||||||||||||||||||||
Sbjct: 537381 ctgtagtagtggtagtacta 537362
to top
>gb|AE007199.1| Sinorhizobium meliloti 1021 plasmid pSymA section 5 of 121 of the
            complete plasmid sequence
          Length = 12047

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  catgtcgtcgccggcgccgg 192
            ||||||||||||||||||||
Sbjct: 5607 catgtcgtcgccggcgccgg 5588
to top
>gb|CP000093.1| Ralstonia eutropha JMP134 plasmid 1, complete sequence
          Length = 87688

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   gcgccgctcgccgcacgccg 354
             ||||||||||||||||||||
Sbjct: 41060 gcgccgctcgccgcacgccg 41041
to top
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16
          Length = 346879

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   cgcgagctgcagggcgcggg 232
             ||||||||||||||||||||
Sbjct: 40780 cgcgagctgcagggcgcggg 40761
to top
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29
          Length = 310550

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 367   acggccacgccgacctgctcgcgg 390
             |||||| |||||||||||||||||
Sbjct: 80810 acggccgcgccgacctgctcgcgg 80833
to top
>emb|AL731613.5|OSJN00257 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10,
              complete sequence
          Length = 133967

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    cacccaccaccgcgcgcggc 131
              ||||||||||||||||||||
Sbjct: 111916 cacccaccaccgcgcgcggc 111897
to top
>emb|AL954817.9| Mouse DNA sequence from clone RP24-84L18 on chromosome 11 Contains the 5'
              end of the gene for a novel protein similar to human
              non-kinase Cdc42 effector protein SPEC2, a heterogeneous
              nuclear ribonucleoprotein A3 (Hnrpa3) pseudogene, three
              novel genes, the Hint1 gene for histidine triad nucleotide
              binding protein and two CpG islands, complete sequence
          Length = 156468

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    cgctcgccgcacgccggcgc 358
              ||||||||||||||||||||
Sbjct: 145322 cgctcgccgcacgccggcgc 145341
to top
>gb|AC105270.2| Homo sapiens chromosome 1 clone RP4-684L20, complete sequence
          Length = 158043

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    ctcattaattgtcatatagc 57
             ||||||||||||||||||||
Sbjct: 13968 ctcattaattgtcatatagc 13949
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 440    cgccaccagcgggttcttcc 459
              ||||||||||||||||||||
Sbjct: 798373 cgccaccagcgggttcttcc 798354
to top
>gb|AC093559.2| Homo sapiens chromosome 1 clone RP11-138K16, complete sequence
          Length = 175909

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     ctcattaattgtcatatagc 57
              ||||||||||||||||||||
Sbjct: 133455 ctcattaattgtcatatagc 133436
to top
>gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete
             sequence
          Length = 132927

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 237   tgggacgggctgctggacccgctggacc 264
             |||||||||||||| |||||||| ||||
Sbjct: 93554 tgggacgggctgctcgacccgctcgacc 93581
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 176     gtcgtcgccggcgccgggaa 195
               ||||||||||||||||||||
Sbjct: 3678205 gtcgtcgccggcgccgggaa 3678186
to top
>gb|AF279141.1|AF279141 Rhodococcus sp. 19070 benzoate dioxygenase large subunit (bopX),
           benzoate dioxygenase small subunit (bopY), benzoate
           dioxygenase reductase (bopZ), cis-diol dehydrogenase
           (bopL), and benzoate transport protein (bopK) genes,
           complete cds
          Length = 6058

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 115 ccaccaccgcgcgcggcaccgccg 138
           |||||||||||||| |||||||||
Sbjct: 700 ccaccaccgcgcgccgcaccgccg 723
to top
>gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence
          Length = 158050

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 10    gtagtagtggtagtactagcagcc 33
             |||||||| |||||||||||||||
Sbjct: 86592 gtagtagtagtagtactagcagcc 86615
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 112      cacccaccaccgcgcgcggc 131
                ||||||||||||||||||||
Sbjct: 27460759 cacccaccaccgcgcgcggc 27460740
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 237      tgggacgggctgctggacccgctggacc 264
                |||||||||||||| |||||||| ||||
Sbjct: 21661650 tgggacgggctgctcgacccgctcgacc 21661677
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 134      cgccgatcgatcgacaagcg 153
                ||||||||||||||||||||
Sbjct: 33899202 cgccgatcgatcgacaagcg 33899183



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 10       gtagtagtggtagtactagcagcc 33
                |||||||| |||||||||||||||
Sbjct: 29276038 gtagtagtagtagtactagcagcc 29276015
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 115     ccaccaccgcgcgcggcacc 134
               ||||||||||||||||||||
Sbjct: 1217776 ccaccaccgcgcgcggcacc 1217795



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 335     gcgccgctcgccgcacgccggcgc 358
               |||||||||||||| |||||||||
Sbjct: 1109689 gcgccgctcgccgcgcgccggcgc 1109712
to top
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 257    gctggaccgggacctgcggg 276
              ||||||||||||||||||||
Sbjct: 793245 gctggaccgggacctgcggg 793264
to top
>dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1004_E04
          Length = 133621

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   cgccgatcgatcgacaagcg 153
             ||||||||||||||||||||
Sbjct: 58165 cgccgatcgatcgacaagcg 58146
to top
>dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0060O16
          Length = 164373

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 10    gtagtagtggtagtactagcagcc 33
             |||||||| |||||||||||||||
Sbjct: 73383 gtagtagtagtagtactagcagcc 73360
to top
>dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0680A05
          Length = 168092

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 10     gtagtagtggtagtactagcagcc 33
              |||||||| |||||||||||||||
Sbjct: 166006 gtagtagtagtagtactagcagcc 165983
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 237      tgggacgggctgctggacccgctggacc 264
                |||||||||||||| |||||||| ||||
Sbjct: 21673313 tgggacgggctgctcgacccgctcgacc 21673340
to top
>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 257    gctggaccgggacctgcggg 276
              ||||||||||||||||||||
Sbjct: 464325 gctggaccgggacctgcggg 464344
to top
>gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipiens
            quinquefasciatus-3940127D9, complete sequence
          Length = 102832

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 167  gcacaccatgtcgtcgccggcgcc 190
            ||||||||||||| ||||||||||
Sbjct: 5687 gcacaccatgtcgccgccggcgcc 5710
to top
>gb|DQ065837.1| Burkholderia cepacia strain 2a plasmid pIJB1, complete sequence
          Length = 99448

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   gcgccgctcgccgcacgccg 354
             ||||||||||||||||||||
Sbjct: 28453 gcgccgctcgccgcacgccg 28434


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,431,907
Number of Sequences: 3902068
Number of extensions: 2431907
Number of successful extensions: 60399
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58066
Number of HSP's gapped (non-prelim): 2333
length of query: 463
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 441
effective length of database: 17,147,199,772
effective search space: 7561915099452
effective search space used: 7561915099452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top