ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet64f04 |
|---|---|
| Clone Library Name | barley_pub |
>ACSA_STRCO (Q9X928) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA| ligase) (Acyl-activating enzyme) Length = 651 Score = 32.7 bits (73), Expect = 0.50 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 5/58 (8%) Frame = +2 Query: 257 ESKAVGALD-TTG----AFSVPLATDLHGADCVAQLHSAASNTPCPGQEPSKIVPVSE 415 E+ VGA D TTG AF + T D VA+L + T P +P +I+PVSE Sbjct: 545 EAAVVGATDETTGQAIVAFVILRGTTAESEDLVAELRNHVGATLGPIAKPKRILPVSE 602
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 30.8 bits (68), Expect = 1.9 Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Frame = +1 Query: 175 HKEEHQGRGNLQRSPGGDQVQEHRWP---VREQSGGCPGYHRCIQRAPGH*PPRRRLCRS 345 H H GRG + SPG + R P VR + R RAP P RL R+ Sbjct: 2223 HHHHHPGRGPGRVSPGVSARRRRRGPVARVRPARAPALAHARARARAPARLLPELRLRRA 2282 Query: 346 APQRRLQHAVPR 381 R Q PR Sbjct: 2283 RRPRPRQRRRPR 2294
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 30.4 bits (67), Expect = 2.5 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +2 Query: 353 SAASNTPCPGQEPSKIVPVSEGTTFGIVAGDKTATPSAA 469 S + P P Q+P+ PV++G G A D A+P+ A Sbjct: 670 SVIVSAPPPAQDPAPATPVAKGAGLGPQAPDSQASPAPA 708
>K1683_HUMAN (Q9H0B3) Protein KIAA1683| Length = 1180 Score = 30.0 bits (66), Expect = 3.2 Identities = 20/83 (24%), Positives = 38/83 (45%) Frame = -1 Query: 327 PWRSVARGTLNAPVVSRAPTALLSYWPSMFLHLIATWRPLKVSSALMFFLVQSAHLARPT 148 P ++ T++ R+P + P L + T P ++ S ++++ LA PT Sbjct: 467 PLQTCLSATMSKTSSQRSPVGVTKPSPQTRLPAMITKTPAQLRSVAT--ILKTLCLASPT 524 Query: 147 TTDVASALATAIASRTPRTSALV 79 +V + A+A+ TP TS + Sbjct: 525 VANVKAPPQVAVAAGTPNTSGSI 547
>DLGP3_RAT (P97838) Disks large-associated protein 3 (DAP-3)| (SAP90/PSD-95-associated protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3) Length = 977 Score = 29.6 bits (65), Expect = 4.2 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 8/69 (11%) Frame = +2 Query: 200 ETFNGLQVAIKCKNIDGQYESKAVGALDTTGAFSVPLATDLHGA--------DCVAQLHS 355 E FN Q+ C ++ G+ ES+AV ALD G F + + L DC+ L + Sbjct: 463 EEFNQ-QLEAVCGSVFGELESQAVDALDLPGCFRMRSHSYLRAIQAGCSQDDDCLPLLAA 521 Query: 356 AASNTPCPG 382 AS + PG Sbjct: 522 PASVSGRPG 530
>DLGP3_MOUSE (Q6PFD5) Disks large-associated protein 3 (DAP-3)| (SAP90/PSD-95-associated protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3) Length = 977 Score = 29.6 bits (65), Expect = 4.2 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 8/69 (11%) Frame = +2 Query: 200 ETFNGLQVAIKCKNIDGQYESKAVGALDTTGAFSVPLATDLHGA--------DCVAQLHS 355 E FN Q+ C ++ G+ ES+AV ALD G F + + L DC+ L + Sbjct: 463 EEFNQ-QLEAVCGSVFGELESQAVDALDLPGCFRMRSHSYLRAIQAGCSQDDDCLPLLAA 521 Query: 356 AASNTPCPG 382 AS + PG Sbjct: 522 PASVSGRPG 530
>ATX1_HUMAN (P54253) Ataxin-1 (Spinocerebellar ataxia type 1 protein)| Length = 816 Score = 29.6 bits (65), Expect = 4.2 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 3/97 (3%) Frame = -1 Query: 333 SAPWRSVARGTLNAPVVSRAPTALLSYWPSMFLHLIATWRPL---KVSSALMFFLVQSAH 163 SAP TL A + P +S P + HL T++ + + S F+ + Sbjct: 91 SAPRSVPVATTLPAAYATPQPGTPVS--PVQYAHLPHTFQFIGSSQYSGTYASFI--PSQ 146 Query: 162 LARPTTTDVASALATAIASRTPRTSALVAAMSELLAD 52 L PT V SA+A+A + TP + + A S LLA+ Sbjct: 147 LIPPTANPVTSAVASAAGATTPSQRSQLEAYSTLLAN 183
>GSPB_DICD3 (Q01563) General secretion pathway protein B| Length = 220 Score = 29.3 bits (64), Expect = 5.5 Identities = 20/73 (27%), Positives = 31/73 (42%) Frame = -1 Query: 468 AADGVAVLSPATMPKVVPSETGTILDGSWPGHGVLEAALWS*ATQSAPWRSVARGTLNAP 289 + A+ +P T +VP+ T D + PG L AA + ATQ+A S + Sbjct: 49 STSAAAIAAPPTKVGMVPASTAVTADENHPGS--LHAAAENSATQTAASGSQTSASSQEA 106 Query: 288 VVSRAPTALLSYW 250 P L++ W Sbjct: 107 TPDTKPAKLVTGW 119
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 28.9 bits (63), Expect = 7.2 Identities = 19/54 (35%), Positives = 27/54 (50%) Frame = +1 Query: 196 RGNLQRSPGGDQVQEHRWPVREQSGGCPGYHRCIQRAPGH*PPRRRLCRSAPQR 357 RG+ DQ ++ R P E+SGG R + R+P PR+R C +P R Sbjct: 627 RGDRDLPSSRDQPRKRRLP--EESGG-----RHLDRSPESDRPRKRHCAPSPDR 673
>UBP26_HUMAN (Q9BXU7) Ubiquitin carboxyl-terminal hydrolase 26 (EC 3.1.2.15)| (Ubiquitin thioesterase 26) (Ubiquitin-specific-processing protease 26) (Deubiquitinating enzyme 26) Length = 913 Score = 28.5 bits (62), Expect = 9.4 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +1 Query: 331 RLCRSAPQRRLQHAVPRPGT 390 R+C APQ+ L + P+PGT Sbjct: 746 RICEQAPQQALPQSFPKPGT 765
>ALS1_CANAL (P46590) Agglutinin-like protein 1 precursor| Length = 1260 Score = 28.5 bits (62), Expect = 9.4 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 3/101 (2%) Frame = -1 Query: 417 PSETGTILDGSWPGHGVLEAALWS*ATQSAPWRSVARGTLNAPVVSRAPTALLS---YWP 247 P ET T+L P H V WS + + + G + ++ P ++ YW Sbjct: 710 PGETDTVLIREPPNHTVTTTEYWSQSYATTTTVTAPPGGTDTVIIREPPNPTVTTTEYWS 769 Query: 246 SMFLHLIATWRPLKVSSALMFFLVQSAHLARPTTTDVASAL 124 F P + ++ + S+ ++ D+ S + Sbjct: 770 QSFATTTTVTAPPGGTDTVIIYESMSSSKISTSSNDITSII 810 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,970,022 Number of Sequences: 219361 Number of extensions: 1350525 Number of successful extensions: 4392 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4215 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4392 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
